Wall clock time and date at job start Tue Mar 31 2020 19:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.69646 * 2 1 4 4 C 1.53190 * 109.58687 * 239.64355 * 2 1 3 5 5 C 1.53039 * 109.31353 * 185.57122 * 4 2 1 6 6 C 1.53038 * 109.52313 * 61.37531 * 5 4 2 7 7 H 1.09006 * 109.49978 * 178.67618 * 6 5 4 8 8 N 1.46500 * 109.50052 * 58.57983 * 6 5 4 9 9 C 1.34776 * 120.00379 * 155.00452 * 8 6 5 10 10 O 1.21631 * 120.00094 * 359.97438 * 9 8 6 11 11 C 1.47267 * 120.00017 * 180.02562 * 9 8 6 12 12 N 1.33560 * 123.14121 * 359.69682 * 11 9 8 13 13 C 1.28651 * 115.76304 * 179.83257 * 12 11 9 14 14 S 1.70768 * 110.56041 * 0.42305 * 13 12 11 15 15 C 1.35213 * 123.13978 * 179.97438 * 11 9 8 16 16 C 1.50700 * 125.58660 * 359.92655 * 15 11 9 17 17 C 1.52994 * 117.49840 * 188.61971 * 16 15 11 18 18 C 1.53001 * 60.00344 * 252.51130 * 17 16 15 19 19 C 1.53200 * 109.31284 * 298.61331 * 6 5 4 20 20 N 1.46923 * 108.76461 * 54.65809 * 19 6 5 21 21 C 1.36934 * 120.63159 * 126.40622 * 20 19 6 22 22 H 1.08001 * 119.99989 * 208.99273 * 21 20 19 23 23 C 1.38809 * 120.00026 * 28.99534 * 21 20 19 24 24 N 1.31618 * 120.00290 * 15.03279 * 23 21 20 25 25 Si 1.86802 * 120.00128 * 195.02764 * 23 21 20 26 26 H 1.48497 * 109.46839 * 60.00142 * 25 23 21 27 27 H 1.48500 * 109.47277 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47172 * 300.00420 * 25 23 21 29 29 H 1.09001 * 109.46765 * 180.36041 * 1 2 3 30 30 H 1.09004 * 109.47069 * 300.35083 * 1 2 3 31 31 H 1.08998 * 109.47725 * 60.35968 * 1 2 3 32 32 H 1.09004 * 109.49421 * 65.62573 * 4 2 1 33 33 H 1.08993 * 109.52469 * 305.54415 * 4 2 1 34 34 H 1.08994 * 109.45967 * 181.38679 * 5 4 2 35 35 H 1.08994 * 109.46525 * 301.36400 * 5 4 2 36 36 H 0.97006 * 119.99753 * 334.99559 * 8 6 5 37 37 H 1.08000 * 124.72020 * 180.19025 * 13 12 11 38 38 H 1.08999 * 115.54940 * 334.32988 * 16 15 11 39 39 H 1.08999 * 117.49636 * 359.97438 * 17 16 15 40 40 H 1.09000 * 117.50215 * 145.01967 * 17 16 15 41 41 H 1.08999 * 117.49786 * 252.51565 * 18 17 16 42 42 H 1.08994 * 117.51872 * 107.47900 * 18 17 16 43 43 H 1.09000 * 109.59717 * 294.86982 * 19 6 5 44 44 H 1.09004 * 109.58388 * 174.43513 * 19 6 5 45 45 H 0.96998 * 120.00359 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8478 -1.1702 6 6 3.9567 -1.6657 0.0634 7 1 5.0410 -1.7698 0.1037 8 7 3.3401 -2.9924 -0.0150 9 6 3.8964 -4.0335 0.6354 10 8 4.9106 -3.8719 1.2871 11 6 3.2769 -5.3672 0.5561 12 7 2.1619 -5.6144 -0.1364 13 6 1.7464 -6.8317 -0.1114 14 16 2.7791 -7.7983 0.8454 15 6 3.7808 -6.4547 1.1820 16 6 5.0223 -6.4784 2.0358 17 6 5.5402 -7.8440 2.4915 18 6 4.8671 -6.9070 3.4964 19 6 3.4651 -0.9468 1.3237 20 7 2.0226 -0.6995 1.1945 21 6 1.1538 -1.1127 2.1690 22 1 0.1360 -1.3669 1.9126 23 6 1.5814 -1.2046 3.4864 24 7 2.7046 -0.6265 3.8557 25 14 0.5625 -2.1489 4.7353 26 1 0.4328 -3.5629 4.3007 27 1 1.2317 -2.0982 6.0600 28 1 -0.7866 -1.5369 4.8378 29 1 -0.3633 -1.0277 0.0065 30 1 -0.3633 0.5193 0.8869 31 1 -0.3634 0.5082 -0.8931 32 1 1.7660 -0.1668 -2.1368 33 1 1.6031 -1.7252 -1.2918 34 1 3.9378 -1.3447 -2.0669 35 1 4.0061 0.1474 -1.0991 36 1 2.5314 -3.1214 -0.5350 37 1 0.8648 -7.1914 -0.6212 38 1 5.7608 -5.7084 1.8130 39 1 4.9828 -8.7252 2.1741 40 1 6.6199 -7.9727 2.5685 41 1 5.5039 -6.4191 4.2344 42 1 3.8670 -7.1714 3.8398 43 1 3.9903 0.0022 1.4316 44 1 3.6519 -1.5716 2.1971 45 1 3.0032 -0.6904 4.7764 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071821557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:18 Heat of formation + Delta-G solvation = 35.302135 kcal Electronic energy + Delta-G solvation = -28053.205488 eV Core-core repulsion = 24391.035440 eV Total energy + Delta-G solvation = -3662.170048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64937 -40.21932 -38.86802 -38.21274 -35.77758 -34.51929 -32.34625 -31.76605 -31.34453 -28.05619 -27.23163 -26.46206 -24.07344 -23.79240 -23.37253 -23.03907 -22.07783 -20.95482 -20.38009 -19.20671 -18.20320 -17.94251 -17.12462 -16.89045 -16.62081 -16.15189 -15.80504 -15.71974 -15.39338 -15.12297 -15.10847 -14.90404 -14.60922 -14.34515 -14.04890 -13.66758 -13.15297 -13.05588 -12.99062 -12.88121 -12.63157 -12.59608 -12.57024 -12.43661 -12.14989 -12.11858 -12.08440 -11.69828 -11.60174 -11.23355 -11.07931 -10.91379 -10.70037 -10.52623 -10.25068 -10.07024 -9.72254 -8.57684 -7.82784 -5.27245 -0.50881 0.22432 0.60764 1.02208 1.35521 1.39075 1.44056 2.28032 2.45631 2.48991 2.86411 3.18520 3.32245 3.46073 3.62541 3.75235 3.97291 3.97856 4.07952 4.11960 4.17129 4.17955 4.47605 4.54488 4.62000 4.62201 4.71230 4.79683 4.84211 4.91086 4.94419 5.02627 5.05477 5.08075 5.09659 5.17425 5.24304 5.30898 5.54137 5.60686 5.67873 5.73312 5.73701 6.36628 6.43426 6.73673 7.17864 7.30451 7.92398 8.42804 9.22130 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010918 B = 0.004969 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.916022 B = 5634.057412 C = 6466.407586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 H 0.018 0.982 4 C -0.120 4.120 5 C -0.110 4.110 6 C 0.125 3.875 7 H 0.068 0.932 8 N -0.676 5.676 9 C 0.580 3.420 10 O -0.573 6.573 11 C -0.026 4.026 12 N -0.463 5.463 13 C -0.008 4.008 14 S 0.277 5.723 15 C -0.171 4.171 16 C -0.116 4.116 17 C -0.140 4.140 18 C -0.170 4.170 19 C 0.173 3.827 20 N -0.594 5.594 21 C -0.235 4.235 22 H 0.071 0.929 23 C -0.054 4.054 24 N -0.935 5.935 25 Si 0.949 3.051 26 H -0.289 1.289 27 H -0.299 1.299 28 H -0.269 1.269 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.408 0.592 37 H 0.244 0.756 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.000 1.000 44 H 0.049 0.951 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 -16.015 -11.478 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.036 0.964 4 C -0.159 4.159 5 C -0.147 4.147 6 C 0.019 3.981 7 H 0.086 0.914 8 N -0.326 5.326 9 C 0.365 3.635 10 O -0.454 6.454 11 C -0.160 4.160 12 N -0.177 5.177 13 C -0.307 4.307 14 S 0.534 5.466 15 C -0.296 4.296 16 C -0.137 4.137 17 C -0.177 4.177 18 C -0.208 4.208 19 C 0.046 3.954 20 N -0.318 5.318 21 C -0.366 4.366 22 H 0.089 0.911 23 C -0.249 4.249 24 N -0.582 5.582 25 Si 0.778 3.222 26 H -0.216 1.216 27 H -0.225 1.225 28 H -0.195 1.195 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.245 0.755 37 H 0.260 0.740 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.141 0.859 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.018 0.982 44 H 0.067 0.933 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.434 -16.457 -10.970 19.783 hybrid contribution -0.259 1.081 1.199 1.635 sum 0.175 -15.376 -9.771 18.219 Atomic orbital electron populations 1.21712 0.94762 1.01100 1.00885 1.20763 0.94146 0.93266 0.86866 0.96414 1.21956 0.94802 1.00766 0.98346 1.21658 0.97278 0.99981 0.95831 1.21596 0.96383 0.82193 0.97976 0.91423 1.45627 1.29324 1.07586 1.50040 1.17467 0.83406 0.83700 0.78932 1.90683 1.26671 1.84951 1.43130 1.20248 0.96026 0.95652 1.04087 1.66919 1.10540 1.20764 1.19509 1.29041 1.06373 0.91365 1.03964 1.82146 1.14373 1.08765 1.41334 1.25101 1.03022 0.98339 1.03098 1.20595 0.95258 1.01839 0.95970 1.23272 1.02599 0.91348 1.00526 1.23129 1.03001 1.03521 0.91126 1.20855 0.84169 0.95325 0.95055 1.44219 1.02248 1.65447 1.19852 1.19325 0.94882 1.35772 0.86576 0.91149 1.25690 0.98942 1.01425 0.98834 1.70142 1.25012 1.46701 1.16333 0.85607 0.78914 0.78916 0.78732 1.21644 1.22499 1.19490 0.93463 0.94516 0.90452 0.89003 0.92622 0.89973 0.90348 0.75471 0.73959 0.86504 0.86645 0.85932 0.88025 0.88551 0.98184 0.93299 0.94825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 7.94 71.98 0.57 -4.00 16 2 C 0.15 6.17 3.50 44.97 0.16 6.33 16 3 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.12 -3.74 5.20 30.67 0.16 -3.58 16 5 C -0.11 -3.47 5.59 30.62 0.17 -3.30 16 6 C 0.12 5.13 2.81 45.07 0.13 5.26 16 7 H 0.07 2.87 7.58 -2.38 -0.02 2.86 16 8 N -0.68 -27.54 4.91 -445.56 -2.19 -29.73 16 9 C 0.58 25.25 7.76 86.62 0.67 25.92 16 10 O -0.57 -27.99 13.82 -4.13 -0.06 -28.04 16 11 C -0.03 -0.96 6.70 40.56 0.27 -0.69 16 12 N -0.46 -14.59 10.12 -193.02 -1.95 -16.55 16 13 C -0.01 -0.18 12.17 130.71 1.59 1.41 16 14 S 0.28 5.30 21.76 -56.49 -1.23 4.07 16 15 C -0.17 -5.25 6.04 24.99 0.15 -5.10 16 16 C -0.12 -3.49 5.40 -11.54 -0.06 -3.55 16 17 C -0.14 -2.77 10.03 30.59 0.31 -2.46 16 18 C -0.17 -4.41 10.23 30.60 0.31 -4.09 16 19 C 0.17 8.94 4.89 86.37 0.42 9.37 16 20 N -0.59 -29.83 2.91 -675.22 -1.96 -31.80 16 21 C -0.23 -13.08 8.61 84.03 0.72 -12.36 16 22 H 0.07 3.80 6.20 -2.91 -0.02 3.79 16 23 C -0.05 -3.20 4.96 84.86 0.42 -2.78 16 24 N -0.93 -58.99 11.14 21.65 0.24 -58.75 16 25 Si 0.95 48.06 29.58 68.60 2.03 50.08 16 26 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 27 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 28 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 29 H 0.05 1.73 7.40 -2.39 -0.02 1.71 16 30 H 0.04 1.47 7.66 -2.39 -0.02 1.45 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.06 1.79 6.40 -2.39 -0.02 1.77 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.41 15.59 6.29 -92.70 -0.58 15.01 16 37 H 0.24 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.12 4.27 6.17 -2.39 -0.01 4.25 16 39 H 0.12 1.75 7.28 -2.39 -0.02 1.73 16 40 H 0.12 1.98 8.14 -2.39 -0.02 1.97 16 41 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.05 3.02 6.06 -2.38 -0.01 3.00 16 45 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -77.03 368.10 1.31 -75.72 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.43 Total: 28.62 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 6.00 Total: 6.38 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -5.86 Total: -136.82 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.06 Total: -28.04 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.08 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.23 Total: 4.07 kcal Total: -77.03 1.31 -75.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071821557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.019 kcal (2) G-P(sol) polarization free energy of solvation -77.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds