Wall clock time and date at job start Tue Mar 31 2020 19:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.58924 * 2 1 4 4 C 1.53199 * 109.58868 * 239.57020 * 2 1 3 5 5 C 1.53039 * 109.31201 * 185.57884 * 4 2 1 6 6 C 1.53037 * 109.54035 * 61.36944 * 5 4 2 7 7 H 1.09004 * 109.49990 * 58.61330 * 6 5 4 8 8 N 1.46499 * 109.49916 * 178.68198 * 6 5 4 9 9 C 1.34778 * 119.99793 * 204.99609 * 8 6 5 10 10 O 1.21626 * 120.00107 * 0.02562 * 9 8 6 11 11 C 1.47268 * 119.99640 * 179.97438 * 9 8 6 12 12 N 1.33556 * 123.14321 * 359.70652 * 11 9 8 13 13 C 1.28653 * 115.76467 * 179.82682 * 12 11 9 14 14 S 1.70765 * 110.56039 * 0.42911 * 13 12 11 15 15 C 1.35206 * 123.13741 * 180.02562 * 11 9 8 16 16 C 1.50700 * 125.58873 * 359.92059 * 15 11 9 17 17 C 1.53002 * 117.49722 * 188.75089 * 16 15 11 18 18 C 1.53004 * 117.49718 * 120.09022 * 16 15 11 19 19 C 1.53630 * 109.24154 * 298.50855 * 6 5 4 20 20 N 1.46927 * 109.58721 * 120.28689 * 2 1 3 21 21 C 1.36939 * 120.62947 * 353.36762 * 20 2 1 22 22 H 1.08010 * 119.99911 * 47.06834 * 21 20 2 23 23 C 1.38810 * 120.00380 * 227.06556 * 21 20 2 24 24 N 1.31616 * 119.99945 * 209.39614 * 23 21 20 25 25 Si 1.86801 * 119.99710 * 29.67619 * 23 21 20 26 26 H 1.48496 * 109.47400 * 84.96505 * 25 23 21 27 27 H 1.48509 * 109.46825 * 204.96441 * 25 23 21 28 28 H 1.48497 * 109.47188 * 324.96280 * 25 23 21 29 29 H 1.08991 * 109.47442 * 299.71592 * 1 2 3 30 30 H 1.08999 * 109.46897 * 59.71664 * 1 2 3 31 31 H 1.09004 * 109.47161 * 179.71294 * 1 2 3 32 32 H 1.08997 * 109.49737 * 305.53362 * 4 2 1 33 33 H 1.09002 * 109.49205 * 65.62897 * 4 2 1 34 34 H 1.09003 * 109.45437 * 181.38904 * 5 4 2 35 35 H 1.08996 * 109.46317 * 301.36067 * 5 4 2 36 36 H 0.96997 * 119.99928 * 24.99993 * 8 6 5 37 37 H 1.08003 * 124.71694 * 180.19059 * 13 12 11 38 38 H 1.08998 * 115.55385 * 334.42469 * 16 15 11 39 39 H 1.08990 * 117.50170 * 0.02562 * 17 16 15 40 40 H 1.09002 * 117.49562 * 145.02660 * 17 16 15 41 41 H 1.09001 * 117.49933 * 214.97925 * 18 16 15 42 42 H 1.09005 * 117.49796 * 0.02562 * 18 16 15 43 43 H 1.09000 * 109.74021 * 295.11880 * 19 6 5 44 44 H 1.08991 * 109.66662 * 174.54539 * 19 6 5 45 45 H 0.97003 * 120.00002 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5675 -0.8495 -1.1690 6 6 3.9569 -1.6657 0.0656 7 1 3.4987 -2.6531 0.0083 8 7 5.4142 -1.8052 0.1198 9 6 5.9676 -2.8473 0.7714 10 8 5.2571 -3.6720 1.3139 11 6 7.4325 -2.9878 0.8254 12 7 8.2708 -2.1239 0.2469 13 6 9.5235 -2.3817 0.3860 14 16 9.7444 -3.8114 1.2934 15 6 8.0544 -4.0070 1.4601 16 6 7.3698 -5.1305 2.1950 17 6 8.2480 -6.0737 3.0196 18 6 7.6294 -6.5566 1.7053 19 6 3.4656 -0.9404 1.3276 20 7 2.0225 -0.6981 1.1953 21 6 1.1537 -1.1100 2.1704 22 1 0.2490 -1.6349 1.9009 23 6 1.4357 -0.8530 3.5050 24 7 0.9973 -1.6698 4.4393 25 14 2.4306 0.6563 3.9755 26 1 1.5274 1.8297 4.0872 27 1 3.1000 0.4209 5.2802 28 1 3.4556 0.9181 2.9334 29 1 -0.3634 0.5094 0.8924 30 1 -0.3633 0.5182 -0.8874 31 1 -0.3634 -1.0277 -0.0051 32 1 1.6030 -1.7270 -1.2892 33 1 1.7660 -0.1695 -2.1366 34 1 3.9378 -1.3475 -2.0652 35 1 4.0061 0.1459 -1.0992 36 1 5.9808 -1.1477 -0.3131 37 1 10.3240 -1.7799 -0.0183 38 1 6.3755 -4.9037 2.5796 39 1 9.3208 -5.8814 3.0309 40 1 7.8312 -6.4677 3.9466 41 1 6.8060 -7.2680 1.7681 42 1 8.2957 -6.6821 0.8518 43 1 3.9877 0.0107 1.4324 44 1 3.6531 -1.5610 2.2038 45 1 1.1946 -1.4904 5.3720 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071821558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:22 Heat of formation + Delta-G solvation = 54.320539 kcal Electronic energy + Delta-G solvation = -27210.469886 eV Core-core repulsion = 23549.124539 eV Total energy + Delta-G solvation = -3661.345348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.58944 -38.86043 -37.58519 -37.30166 -34.47078 -32.71174 -30.96170 -30.66756 -30.33570 -26.78106 -25.66524 -24.69401 -22.88815 -22.56937 -22.27792 -22.04886 -20.50843 -19.79821 -19.14806 -18.24989 -16.92367 -16.45627 -15.93703 -15.65096 -15.27560 -14.96592 -14.52267 -14.38691 -14.32974 -13.89357 -13.73844 -13.49520 -13.34963 -12.85054 -12.46949 -12.30927 -12.16602 -11.92048 -11.77330 -11.69217 -11.41417 -11.21953 -11.12486 -10.78154 -10.72709 -10.58159 -10.43927 -10.20463 -10.02794 -9.94229 -9.74050 -9.55907 -9.50214 -9.42529 -9.00912 -8.63748 -8.29062 -6.53272 -5.99568 -3.42019 0.35087 0.99552 1.42082 1.95981 3.40459 3.44927 3.52029 3.53233 3.58311 3.76634 4.00404 4.33199 4.62355 4.63725 4.81395 4.88456 5.04022 5.12738 5.26026 5.32752 5.38325 5.41369 5.49673 5.58324 5.67202 5.77970 5.87385 5.89495 6.04372 6.13966 6.17341 6.25238 6.35297 6.38019 6.45425 6.58833 6.66068 6.75297 6.84941 7.03650 7.12687 7.20124 7.23509 7.87061 8.12865 8.50821 8.55246 9.07381 9.77270 10.27624 11.15520 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.003652 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.247029 B = 7666.035932 C = 8416.074126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.161 3.839 3 H 0.026 0.974 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.124 3.876 7 H 0.091 0.909 8 N -0.706 5.706 9 C 0.589 3.411 10 O -0.519 6.519 11 C 0.002 3.998 12 N -0.435 5.435 13 C -0.010 4.010 14 S 0.191 5.809 15 C -0.145 4.145 16 C -0.089 4.089 17 C -0.178 4.178 18 C -0.159 4.159 19 C 0.139 3.861 20 N -0.592 5.592 21 C -0.273 4.273 22 H 0.074 0.926 23 C 0.053 3.947 24 N -0.884 5.884 25 Si 0.851 3.149 26 H -0.287 1.287 27 H -0.298 1.298 28 H -0.260 1.260 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.402 0.598 37 H 0.204 0.796 38 H 0.153 0.847 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.025 0.975 44 H 0.070 0.930 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.873 -4.130 -9.864 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 H 0.044 0.956 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.018 3.982 7 H 0.109 0.891 8 N -0.356 5.356 9 C 0.371 3.629 10 O -0.395 6.395 11 C -0.132 4.132 12 N -0.149 5.149 13 C -0.309 4.309 14 S 0.447 5.553 15 C -0.269 4.269 16 C -0.109 4.109 17 C -0.215 4.215 18 C -0.197 4.197 19 C 0.012 3.988 20 N -0.316 5.316 21 C -0.401 4.401 22 H 0.092 0.908 23 C -0.150 4.150 24 N -0.522 5.522 25 Si 0.679 3.321 26 H -0.214 1.214 27 H -0.225 1.225 28 H -0.185 1.185 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.236 0.764 37 H 0.220 0.780 38 H 0.170 0.830 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.043 0.957 44 H 0.088 0.912 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.994 -4.775 -9.299 21.680 hybrid contribution 0.119 1.539 0.120 1.549 sum 19.113 -3.235 -9.179 21.448 Atomic orbital electron populations 1.21740 0.95294 1.01809 1.00156 1.20649 0.93710 0.93277 0.86840 0.95627 1.22016 0.94011 1.01590 0.98845 1.21675 0.97540 0.99627 0.96598 1.21968 0.77517 1.01200 0.97488 0.89127 1.45963 1.08542 1.26479 1.54647 1.16985 0.84518 0.82055 0.79307 1.90812 1.61280 1.42237 1.45181 1.20489 0.96062 0.93786 1.02875 1.66957 1.01807 1.27334 1.18842 1.28281 0.97253 1.00991 1.04402 1.82719 1.02378 1.22397 1.47782 1.24824 0.97601 1.01118 1.03354 1.20782 1.01352 0.86877 1.01876 1.23168 0.98661 1.03482 0.96218 1.23077 1.03422 0.95617 0.97546 1.21755 0.85266 0.96429 0.95312 1.44273 1.01770 1.65365 1.20242 1.18535 1.05138 1.31853 0.84578 0.90815 1.25711 0.96508 0.96779 0.96000 1.70002 1.47048 1.34348 1.00831 0.87245 0.80882 0.86437 0.77531 1.21388 1.22503 1.18524 0.91811 0.94410 0.92534 0.91724 0.92424 0.92618 0.92194 0.76383 0.77968 0.82961 0.88820 0.87483 0.87534 0.88782 0.95728 0.91159 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.13 37.15 0.30 -2.21 16 2 C 0.16 3.21 3.49 -67.60 -0.24 2.97 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.08 5.37 -26.61 -0.14 -2.22 16 5 C -0.12 -1.84 5.35 -26.69 -0.14 -1.98 16 6 C 0.12 2.35 2.62 -67.58 -0.18 2.17 16 7 H 0.09 1.94 7.58 -51.93 -0.39 1.55 16 8 N -0.71 -12.03 5.08 -54.59 -0.28 -12.31 16 9 C 0.59 10.73 7.77 -12.59 -0.10 10.63 16 10 O -0.52 -11.06 13.82 5.25 0.07 -10.98 16 11 C 0.00 0.03 6.70 -84.53 -0.57 -0.54 16 12 N -0.44 -5.73 10.12 -12.36 -0.13 -5.85 16 13 C -0.01 -0.09 12.17 51.43 0.63 0.53 16 14 S 0.19 1.69 21.77 -107.50 -2.34 -0.65 16 15 C -0.15 -1.92 6.04 -35.39 -0.21 -2.13 16 16 C -0.09 -1.17 5.40 -91.77 -0.50 -1.66 16 17 C -0.18 -1.74 10.03 -26.69 -0.27 -2.00 16 18 C -0.16 -1.65 10.24 -26.69 -0.27 -1.93 16 19 C 0.14 3.19 4.21 -3.48 -0.01 3.18 16 20 N -0.59 -14.24 2.34 -164.50 -0.39 -14.62 16 21 C -0.27 -7.64 8.26 -15.06 -0.12 -7.76 16 22 H 0.07 2.21 7.06 -52.48 -0.37 1.84 16 23 C 0.05 1.55 4.99 -17.43 -0.09 1.46 16 24 N -0.88 -27.33 13.97 55.49 0.78 -26.55 16 25 Si 0.85 22.33 27.47 -169.99 -4.67 17.67 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 28 H -0.26 -6.60 5.08 56.52 0.29 -6.31 16 29 H 0.06 1.32 7.68 -51.93 -0.40 0.92 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.12 7.46 -51.93 -0.39 0.73 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.40 5.97 8.12 -40.82 -0.33 5.63 16 37 H 0.20 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.15 2.49 6.17 -51.93 -0.32 2.17 16 39 H 0.09 0.78 7.28 -51.93 -0.38 0.40 16 40 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.02 0.57 6.57 -51.93 -0.34 0.23 16 44 H 0.07 1.86 7.29 -51.93 -0.38 1.48 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 369.48 15.07 5.57 5.57 Total: -1.00 -33.29 369.48 -10.07 -43.36 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.78 Total: 5.86 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.91 Total: -1.48 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.01 Total: -59.34 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.07 Total: -10.98 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.67 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.34 Total: -0.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.29 -10.07 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071821558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.681 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds