Wall clock time and date at job start Tue Mar 31 2020 19:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.58924 * 2 1 4 4 C 1.53199 * 109.58868 * 239.57020 * 2 1 3 5 5 C 1.53039 * 109.31201 * 185.57884 * 4 2 1 6 6 C 1.53037 * 109.54035 * 61.36944 * 5 4 2 7 7 H 1.09004 * 109.49990 * 58.61330 * 6 5 4 8 8 N 1.46499 * 109.49916 * 178.68198 * 6 5 4 9 9 C 1.34778 * 119.99793 * 204.99609 * 8 6 5 10 10 O 1.21626 * 120.00107 * 0.02562 * 9 8 6 11 11 C 1.47268 * 119.99640 * 179.97438 * 9 8 6 12 12 N 1.33556 * 123.14321 * 359.70652 * 11 9 8 13 13 C 1.28653 * 115.76467 * 179.82682 * 12 11 9 14 14 S 1.70765 * 110.56039 * 0.42911 * 13 12 11 15 15 C 1.35206 * 123.13741 * 180.02562 * 11 9 8 16 16 C 1.50700 * 125.58873 * 359.92059 * 15 11 9 17 17 C 1.53002 * 117.49722 * 188.75089 * 16 15 11 18 18 C 1.53004 * 117.49718 * 120.09022 * 16 15 11 19 19 C 1.53630 * 109.24154 * 298.50855 * 6 5 4 20 20 N 1.46927 * 109.58721 * 120.28689 * 2 1 3 21 21 C 1.36939 * 120.62947 * 353.36762 * 20 2 1 22 22 H 1.08010 * 119.99911 * 47.06834 * 21 20 2 23 23 C 1.38810 * 120.00380 * 227.06556 * 21 20 2 24 24 N 1.31616 * 119.99945 * 209.39614 * 23 21 20 25 25 Si 1.86801 * 119.99710 * 29.67619 * 23 21 20 26 26 H 1.48496 * 109.47400 * 84.96505 * 25 23 21 27 27 H 1.48509 * 109.46825 * 204.96441 * 25 23 21 28 28 H 1.48497 * 109.47188 * 324.96280 * 25 23 21 29 29 H 1.08991 * 109.47442 * 299.71592 * 1 2 3 30 30 H 1.08999 * 109.46897 * 59.71664 * 1 2 3 31 31 H 1.09004 * 109.47161 * 179.71294 * 1 2 3 32 32 H 1.08997 * 109.49737 * 305.53362 * 4 2 1 33 33 H 1.09002 * 109.49205 * 65.62897 * 4 2 1 34 34 H 1.09003 * 109.45437 * 181.38904 * 5 4 2 35 35 H 1.08996 * 109.46317 * 301.36067 * 5 4 2 36 36 H 0.96997 * 119.99928 * 24.99993 * 8 6 5 37 37 H 1.08003 * 124.71694 * 180.19059 * 13 12 11 38 38 H 1.08998 * 115.55385 * 334.42469 * 16 15 11 39 39 H 1.08990 * 117.50170 * 0.02562 * 17 16 15 40 40 H 1.09002 * 117.49562 * 145.02660 * 17 16 15 41 41 H 1.09001 * 117.49933 * 214.97925 * 18 16 15 42 42 H 1.09005 * 117.49796 * 0.02562 * 18 16 15 43 43 H 1.09000 * 109.74021 * 295.11880 * 19 6 5 44 44 H 1.08991 * 109.66662 * 174.54539 * 19 6 5 45 45 H 0.97003 * 120.00002 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5675 -0.8495 -1.1690 6 6 3.9569 -1.6657 0.0656 7 1 3.4987 -2.6531 0.0083 8 7 5.4142 -1.8052 0.1198 9 6 5.9676 -2.8473 0.7714 10 8 5.2571 -3.6720 1.3139 11 6 7.4325 -2.9878 0.8254 12 7 8.2708 -2.1239 0.2469 13 6 9.5235 -2.3817 0.3860 14 16 9.7444 -3.8114 1.2934 15 6 8.0544 -4.0070 1.4601 16 6 7.3698 -5.1305 2.1950 17 6 8.2480 -6.0737 3.0196 18 6 7.6294 -6.5566 1.7053 19 6 3.4656 -0.9404 1.3276 20 7 2.0225 -0.6981 1.1953 21 6 1.1537 -1.1100 2.1704 22 1 0.2490 -1.6349 1.9009 23 6 1.4357 -0.8530 3.5050 24 7 0.9973 -1.6698 4.4393 25 14 2.4306 0.6563 3.9755 26 1 1.5274 1.8297 4.0872 27 1 3.1000 0.4209 5.2802 28 1 3.4556 0.9181 2.9334 29 1 -0.3634 0.5094 0.8924 30 1 -0.3633 0.5182 -0.8874 31 1 -0.3634 -1.0277 -0.0051 32 1 1.6030 -1.7270 -1.2892 33 1 1.7660 -0.1695 -2.1366 34 1 3.9378 -1.3475 -2.0652 35 1 4.0061 0.1459 -1.0992 36 1 5.9808 -1.1477 -0.3131 37 1 10.3240 -1.7799 -0.0183 38 1 6.3755 -4.9037 2.5796 39 1 9.3208 -5.8814 3.0309 40 1 7.8312 -6.4677 3.9466 41 1 6.8060 -7.2680 1.7681 42 1 8.2957 -6.6821 0.8518 43 1 3.9877 0.0107 1.4324 44 1 3.6531 -1.5610 2.2038 45 1 1.1946 -1.4904 5.3720 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071821558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:21 Heat of formation + Delta-G solvation = 31.375865 kcal Electronic energy + Delta-G solvation = -27211.464842 eV Core-core repulsion = 23549.124539 eV Total energy + Delta-G solvation = -3662.340303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.71885 -40.21779 -39.06343 -38.23600 -36.07613 -34.64423 -32.61121 -32.35416 -31.40383 -28.15465 -27.23349 -26.22924 -24.34915 -23.69742 -23.34676 -23.06005 -22.04578 -21.34807 -20.57955 -19.19399 -18.47411 -18.06270 -17.20921 -17.03383 -16.54973 -16.39227 -16.21649 -15.62427 -15.38720 -15.17381 -15.12650 -15.06592 -14.77878 -14.59891 -14.37499 -13.74632 -13.40598 -13.15782 -13.05618 -12.98756 -12.77824 -12.63717 -12.55974 -12.50296 -12.15495 -12.08410 -11.88738 -11.73936 -11.64868 -11.48887 -11.25149 -10.95991 -10.75515 -10.60474 -10.27293 -10.22761 -9.82256 -8.53338 -8.27764 -5.66183 -0.54775 0.18401 0.59278 0.93550 1.30271 1.33742 1.43716 2.11861 2.27423 2.42377 2.85386 2.95220 3.11527 3.38966 3.45039 3.72787 3.82762 3.98472 4.02476 4.06053 4.12976 4.15360 4.30344 4.43511 4.53402 4.62319 4.63797 4.69542 4.81151 4.84599 4.90282 4.96361 4.99937 5.04646 5.08333 5.10817 5.16470 5.17031 5.26310 5.45955 5.54872 5.65099 5.93139 6.25438 6.28430 6.61722 7.01198 7.17835 7.61473 8.13806 8.91812 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.003652 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.247029 B = 7666.035932 C = 8416.074126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.151 3.849 3 H 0.041 0.959 4 C -0.117 4.117 5 C -0.107 4.107 6 C 0.136 3.864 7 H 0.057 0.943 8 N -0.697 5.697 9 C 0.579 3.421 10 O -0.566 6.566 11 C -0.029 4.029 12 N -0.461 5.461 13 C -0.005 4.005 14 S 0.285 5.715 15 C -0.167 4.167 16 C -0.124 4.124 17 C -0.154 4.154 18 C -0.151 4.151 19 C 0.145 3.855 20 N -0.605 5.605 21 C -0.256 4.256 22 H 0.041 0.959 23 C -0.003 4.003 24 N -0.934 5.934 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.306 1.306 28 H -0.246 1.246 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.415 0.585 37 H 0.247 0.753 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.030 0.970 44 H 0.021 0.979 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.828 -2.662 -12.597 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.047 3.953 3 H 0.058 0.942 4 C -0.156 4.156 5 C -0.145 4.145 6 C 0.030 3.970 7 H 0.075 0.925 8 N -0.348 5.348 9 C 0.365 3.635 10 O -0.445 6.445 11 C -0.163 4.163 12 N -0.175 5.175 13 C -0.304 4.304 14 S 0.542 5.458 15 C -0.292 4.292 16 C -0.145 4.145 17 C -0.192 4.192 18 C -0.189 4.189 19 C 0.018 3.982 20 N -0.331 5.331 21 C -0.386 4.386 22 H 0.058 0.942 23 C -0.202 4.202 24 N -0.576 5.576 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.234 1.234 28 H -0.171 1.171 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.252 0.748 37 H 0.263 0.737 38 H 0.124 0.876 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.130 0.870 43 H 0.047 0.953 44 H 0.039 0.961 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 22.988 -3.267 -12.088 26.177 hybrid contribution -1.035 0.970 0.939 1.702 sum 21.953 -2.297 -11.149 24.729 Atomic orbital electron populations 1.21684 0.94856 1.00859 1.01010 1.20969 0.94289 0.93894 0.86197 0.94177 1.21940 0.94279 1.00925 0.98504 1.21654 0.97115 1.00184 0.95523 1.21568 0.78663 0.99493 0.97315 0.92511 1.45807 1.07703 1.26742 1.54565 1.17599 0.86252 0.81453 0.78240 1.90794 1.62957 1.43819 1.46915 1.20117 0.94571 0.95944 1.05684 1.66926 1.02986 1.27578 1.20042 1.29069 0.96945 1.01399 1.02978 1.82324 0.97229 1.20621 1.45637 1.25073 1.00999 1.00416 1.02670 1.20582 1.00606 0.88650 1.04651 1.23286 0.99297 1.00586 0.95987 1.23170 1.03596 0.93425 0.98696 1.21584 0.85003 0.95962 0.95614 1.44421 1.01622 1.66265 1.20802 1.18414 1.04351 1.30207 0.85604 0.94190 1.26284 0.98576 0.99137 0.96172 1.70114 1.50208 1.36241 1.01062 0.86283 0.79854 0.83023 0.77026 1.20644 1.23351 1.17053 0.94391 0.89995 0.94462 0.93211 0.88108 0.89688 0.90179 0.74761 0.73678 0.87602 0.86438 0.87027 0.87853 0.87030 0.95259 0.96063 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 8.13 71.98 0.59 -4.14 16 2 C 0.15 5.81 3.49 44.97 0.16 5.96 16 3 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.12 -3.58 5.37 30.67 0.16 -3.41 16 5 C -0.11 -3.09 5.35 30.62 0.16 -2.93 16 6 C 0.14 5.24 2.62 45.22 0.12 5.36 16 7 H 0.06 2.58 7.58 -2.39 -0.02 2.56 16 8 N -0.70 -24.08 5.08 -444.87 -2.26 -26.33 16 9 C 0.58 22.26 7.77 86.62 0.67 22.93 16 10 O -0.57 -26.42 13.82 -4.11 -0.06 -26.48 16 11 C -0.03 -0.90 6.70 40.56 0.27 -0.62 16 12 N -0.46 -11.25 10.12 -193.03 -1.95 -13.21 16 13 C 0.00 -0.07 12.17 130.71 1.59 1.52 16 14 S 0.28 4.02 21.77 -56.49 -1.23 2.79 16 15 C -0.17 -4.33 6.04 24.99 0.15 -4.18 16 16 C -0.12 -3.40 5.40 -11.54 -0.06 -3.47 16 17 C -0.15 -2.83 10.03 30.62 0.31 -2.53 16 18 C -0.15 -3.08 10.24 30.62 0.31 -2.77 16 19 C 0.14 6.84 4.21 86.51 0.36 7.21 16 20 N -0.61 -29.82 2.34 -674.37 -1.58 -31.40 16 21 C -0.26 -15.10 8.26 84.03 0.69 -14.41 16 22 H 0.04 2.59 7.06 -2.91 -0.02 2.57 16 23 C 0.00 -0.19 4.99 84.86 0.42 0.23 16 24 N -0.93 -61.33 13.97 21.65 0.30 -61.03 16 25 Si 0.91 47.97 27.47 68.60 1.88 49.85 16 26 H -0.28 -14.30 7.11 99.48 0.71 -13.59 16 27 H -0.31 -16.39 7.11 99.48 0.71 -15.69 16 28 H -0.25 -12.21 5.08 99.48 0.51 -11.71 16 29 H 0.04 1.58 7.68 -2.39 -0.02 1.56 16 30 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.04 1.50 7.46 -2.38 -0.02 1.48 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 36 H 0.42 11.90 8.12 -92.71 -0.75 11.15 16 37 H 0.25 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.11 3.91 6.17 -2.39 -0.01 3.89 16 39 H 0.12 1.56 7.28 -2.39 -0.02 1.55 16 40 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 43 H 0.03 1.36 6.57 -2.39 -0.02 1.34 16 44 H 0.02 1.18 7.29 -2.39 -0.02 1.16 16 45 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 Total: -1.00 -81.42 369.48 1.08 -80.34 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.06 Total: 20.71 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 5.92 Total: 4.76 kcal Atomic # 7 Polarization: -126.48 SS G_CDS: -5.49 Total: -131.97 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.06 Total: -26.48 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 1.88 Total: 49.85 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.23 Total: 2.79 kcal Total: -81.42 1.08 -80.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071821558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.719 kcal (2) G-P(sol) polarization free energy of solvation -81.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds