Wall clock time and date at job start Tue Mar 31 2020 19:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58673 * 2 1 4 4 C 1.53191 * 109.58229 * 120.28336 * 2 1 3 5 5 C 1.53041 * 109.31394 * 174.56566 * 4 2 1 6 6 C 1.53040 * 109.53557 * 298.63509 * 5 4 2 7 7 H 1.09007 * 109.49480 * 181.31119 * 6 5 4 8 8 N 1.46500 * 109.49829 * 301.41173 * 6 5 4 9 9 C 1.34774 * 120.00029 * 205.00092 * 8 6 5 10 10 O 1.21696 * 119.99930 * 359.97438 * 9 8 6 11 11 C 1.46679 * 120.00312 * 179.97438 * 9 8 6 12 12 S 1.76213 * 126.12660 * 359.69621 * 11 9 8 13 13 C 1.70957 * 90.31483 * 179.91783 * 12 11 9 14 14 N 1.29429 * 110.38730 * 0.34492 * 13 12 11 15 15 C 1.30944 * 117.36609 * 359.72535 * 14 13 12 16 16 C 1.50696 * 122.90420 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.49956 * 8.78543 * 16 15 14 18 18 C 1.53006 * 117.50093 * 300.12493 * 16 15 14 19 19 C 1.53197 * 109.31384 * 61.36343 * 6 5 4 20 20 N 1.46921 * 109.70627 * 239.64259 * 2 1 3 21 21 C 1.36944 * 120.63036 * 6.51200 * 20 2 1 22 22 H 1.07995 * 119.99899 * 330.20373 * 21 20 2 23 23 C 1.38810 * 119.99902 * 150.20045 * 21 20 2 24 24 N 1.31620 * 119.99942 * 344.48280 * 23 21 20 25 25 Si 1.86795 * 119.99872 * 164.47877 * 23 21 20 26 26 H 1.48509 * 109.47049 * 90.00392 * 25 23 21 27 27 H 1.48497 * 109.47148 * 209.99933 * 25 23 21 28 28 H 1.48495 * 109.47222 * 330.00437 * 25 23 21 29 29 H 1.09000 * 109.47456 * 300.00245 * 1 2 3 30 30 H 1.09001 * 109.46694 * 60.00114 * 1 2 3 31 31 H 1.09003 * 109.47396 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.49925 * 294.51526 * 4 2 1 33 33 H 1.08999 * 109.49936 * 54.61561 * 4 2 1 34 34 H 1.09006 * 109.45921 * 58.65326 * 5 4 2 35 35 H 1.08993 * 109.46150 * 178.61238 * 5 4 2 36 36 H 0.96997 * 120.00202 * 24.99847 * 8 6 5 37 37 H 1.07998 * 124.80861 * 180.02562 * 13 12 11 38 38 H 1.08994 * 115.54995 * 154.45645 * 16 15 14 39 39 H 1.08998 * 117.49864 * 0.02562 * 17 16 15 40 40 H 1.09001 * 117.50138 * 145.02527 * 17 16 15 41 41 H 1.08995 * 117.50165 * 214.98498 * 18 16 15 42 42 H 1.09003 * 117.49264 * 359.97438 * 18 16 15 43 43 H 1.08998 * 109.58197 * 65.14932 * 19 6 5 44 44 H 1.08994 * 109.58664 * 185.43222 * 19 6 5 45 45 H 0.97005 * 119.99905 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7278 1.2464 5 6 3.5677 -0.8434 1.1731 6 6 3.9603 -1.6609 -0.0597 7 1 5.0449 -1.7626 -0.0985 8 7 3.3464 -2.9888 0.0183 9 6 3.9058 -4.0290 -0.6309 10 8 4.9206 -3.8651 -1.2823 11 6 3.2916 -5.3587 -0.5523 12 16 1.8345 -5.7786 0.3452 13 6 1.9709 -7.4016 -0.1742 14 7 3.0148 -7.5485 -0.9252 15 6 3.7467 -6.4868 -1.1528 16 6 4.9875 -6.5158 -2.0075 17 6 5.2765 -7.7983 -2.7901 18 6 6.1262 -7.4387 -1.5687 19 6 3.4685 -0.9436 -1.3209 20 7 2.0254 -0.6990 -1.1935 21 6 1.1585 -1.1152 -2.1685 22 1 0.1448 -1.3840 -1.9108 23 6 1.5827 -1.1915 -3.4880 24 7 2.6926 -0.5886 -3.8583 25 14 0.5786 -2.1499 -4.7379 26 1 -0.4165 -1.2471 -5.3706 27 1 1.4812 -2.7000 -5.7810 28 1 -0.1273 -3.2643 -4.0561 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7637 -0.1655 2.1372 33 1 1.6048 -1.7246 1.2921 34 1 4.0045 0.1528 1.1023 35 1 3.9379 -1.3391 2.0704 36 1 2.5374 -3.1194 0.5373 37 1 1.2863 -8.1935 0.0914 38 1 5.2586 -5.5692 -2.4749 39 1 4.5689 -8.6210 -2.6871 40 1 5.7382 -7.6955 -3.7721 41 1 7.1464 -7.0993 -1.7476 42 1 5.9780 -8.0245 -0.6615 43 1 3.9920 0.0063 -1.4285 44 1 3.6599 -1.5673 -2.1941 45 1 2.9889 -0.6416 -4.7805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071883859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:49 Heat of formation + Delta-G solvation = 38.543276 kcal Electronic energy + Delta-G solvation = -27953.229811 eV Core-core repulsion = 24291.200310 eV Total energy + Delta-G solvation = -3662.029501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.58272 -40.61734 -39.01819 -37.45884 -35.80570 -34.52245 -32.71170 -31.78462 -31.22491 -27.98636 -27.24099 -26.55577 -24.15709 -23.86240 -23.29356 -23.04222 -22.05010 -20.59967 -20.40581 -19.10833 -18.19916 -18.01226 -17.10922 -16.98750 -16.34729 -16.33377 -15.88606 -15.64181 -15.36662 -15.28079 -15.17999 -14.84836 -14.60649 -14.40021 -14.05196 -13.68089 -13.35854 -12.98546 -12.91531 -12.64858 -12.63276 -12.53503 -12.43415 -12.42300 -12.15662 -12.08865 -11.77955 -11.59075 -11.42857 -11.22794 -11.11636 -11.05049 -10.69737 -10.60077 -10.52242 -10.02254 -9.69689 -8.56734 -7.83284 -5.27814 -0.77212 0.18157 0.55676 1.36439 1.37688 1.40605 1.46359 2.04535 2.27660 2.48289 2.94823 3.14895 3.33092 3.60790 3.63271 3.86268 3.93717 4.05244 4.09727 4.11346 4.17809 4.23028 4.47247 4.48342 4.64516 4.70053 4.73715 4.80573 4.84156 4.95611 5.02592 5.03929 5.07025 5.11071 5.20295 5.25636 5.27280 5.31501 5.57353 5.60509 5.65288 5.73192 5.73704 6.43939 6.46916 6.60187 7.18446 7.21264 7.92929 8.43652 9.21991 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.005028 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.943950 B = 5567.840417 C = 6281.701792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.154 3.846 3 H 0.015 0.985 4 C -0.120 4.120 5 C -0.111 4.111 6 C 0.128 3.872 7 H 0.069 0.931 8 N -0.685 5.685 9 C 0.588 3.412 10 O -0.566 6.566 11 C -0.320 4.320 12 S 0.213 5.787 13 C 0.046 3.954 14 N -0.493 5.493 15 C 0.163 3.837 16 C -0.128 4.128 17 C -0.150 4.150 18 C -0.140 4.140 19 C 0.173 3.827 20 N -0.594 5.594 21 C -0.234 4.234 22 H 0.076 0.924 23 C -0.052 4.052 24 N -0.934 5.934 25 Si 0.942 3.058 26 H -0.281 1.281 27 H -0.307 1.307 28 H -0.269 1.269 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.402 0.598 37 H 0.253 0.747 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.099 0.901 43 H -0.001 1.001 44 H 0.046 0.954 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.756 -11.952 14.859 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.033 0.967 4 C -0.159 4.159 5 C -0.149 4.149 6 C 0.022 3.978 7 H 0.087 0.913 8 N -0.336 5.336 9 C 0.374 3.626 10 O -0.448 6.448 11 C -0.444 4.444 12 S 0.469 5.531 13 C -0.249 4.249 14 N -0.207 5.207 15 C 0.025 3.975 16 C -0.149 4.149 17 C -0.187 4.187 18 C -0.178 4.178 19 C 0.045 3.955 20 N -0.318 5.318 21 C -0.365 4.365 22 H 0.093 0.907 23 C -0.247 4.247 24 N -0.581 5.581 25 Si 0.772 3.228 26 H -0.208 1.208 27 H -0.234 1.234 28 H -0.194 1.194 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.239 0.761 37 H 0.268 0.732 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.117 0.883 43 H 0.017 0.983 44 H 0.064 0.936 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.701 -11.790 14.752 18.961 hybrid contribution 0.186 -0.031 -1.952 1.961 sum -1.515 -11.820 12.800 17.489 Atomic orbital electron populations 1.21724 0.94628 1.01376 1.00860 1.20773 0.94222 0.93243 0.86915 0.96714 1.21975 0.94666 1.00951 0.98330 1.21684 0.97377 1.00022 0.95825 1.21578 0.96518 0.81771 0.97961 0.91257 1.45643 1.29230 1.07966 1.50727 1.16985 0.83530 0.83112 0.79006 1.90729 1.26564 1.84893 1.42587 1.25449 1.05805 0.99216 1.13899 1.83626 1.19774 1.05929 1.43806 1.29482 0.97938 1.01044 0.96407 1.66001 1.06513 1.30636 1.17551 1.19800 0.96104 0.86215 0.95374 1.20809 0.93373 0.97404 1.03335 1.23029 1.02701 0.96585 0.96385 1.22955 0.95126 1.00441 0.99234 1.20830 0.84295 0.95339 0.94999 1.44237 1.02124 1.65484 1.19925 1.19367 0.95408 1.35425 0.86271 0.90657 1.25693 0.98901 1.01223 0.98918 1.70150 1.25879 1.45976 1.16137 0.85639 0.78126 0.79346 0.79687 1.20797 1.23404 1.19420 0.90494 0.94677 0.92966 0.88856 0.92179 0.90479 0.89585 0.76119 0.73168 0.87200 0.87517 0.87513 0.87275 0.88266 0.98263 0.93594 0.94908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 7.96 71.98 0.57 -3.65 16 2 C 0.15 5.67 3.49 44.98 0.16 5.82 16 3 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 4 C -0.12 -3.30 5.21 30.67 0.16 -3.14 16 5 C -0.11 -3.15 5.59 30.62 0.17 -2.98 16 6 C 0.13 4.85 2.81 45.07 0.13 4.97 16 7 H 0.07 2.76 7.58 -2.38 -0.02 2.74 16 8 N -0.69 -24.75 4.91 -446.11 -2.19 -26.94 16 9 C 0.59 23.59 7.75 86.45 0.67 24.26 16 10 O -0.57 -26.72 13.98 -4.34 -0.06 -26.78 16 11 C -0.32 -10.82 6.48 23.88 0.15 -10.66 16 12 S 0.21 4.78 22.35 -56.49 -1.26 3.52 16 13 C 0.05 0.90 12.22 130.60 1.60 2.50 16 14 N -0.49 -13.50 9.81 -190.40 -1.87 -15.37 16 15 C 0.16 5.39 6.41 42.09 0.27 5.66 16 16 C -0.13 -4.29 5.44 -11.54 -0.06 -4.35 16 17 C -0.15 -3.92 10.09 30.62 0.31 -3.61 16 18 C -0.14 -3.61 10.24 30.62 0.31 -3.30 16 19 C 0.17 8.48 4.88 86.36 0.42 8.90 16 20 N -0.59 -28.09 2.90 -675.25 -1.96 -30.05 16 21 C -0.23 -12.37 8.58 84.03 0.72 -11.65 16 22 H 0.08 3.80 6.24 -2.91 -0.02 3.79 16 23 C -0.05 -3.00 4.94 84.86 0.42 -2.58 16 24 N -0.93 -57.82 11.23 21.65 0.24 -57.58 16 25 Si 0.94 46.81 29.58 68.60 2.03 48.84 16 26 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 27 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 28 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.03 1.32 7.66 -2.39 -0.02 1.30 16 31 H 0.05 1.70 7.42 -2.39 -0.02 1.68 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.60 6.40 -2.39 -0.02 1.58 16 34 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.40 12.58 5.95 -92.71 -0.55 12.02 16 37 H 0.25 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.11 4.45 6.16 -2.39 -0.01 4.44 16 39 H 0.11 2.70 7.74 -2.39 -0.02 2.68 16 40 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 44 H 0.05 2.73 6.15 -2.39 -0.01 2.71 16 45 H 0.24 14.88 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -74.55 369.13 1.39 -73.16 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.46 Total: 24.99 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 6.00 Total: 6.19 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -5.78 Total: -129.93 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.06 Total: -26.78 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.26 Total: 3.52 kcal Total: -74.55 1.39 -73.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.703 kcal (2) G-P(sol) polarization free energy of solvation -74.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds