Wall clock time and date at job start Tue Mar 31 2020 19:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.58278 * 2 1 4 4 C 1.53190 * 109.58753 * 120.42723 * 2 1 3 5 5 C 1.53034 * 109.31105 * 174.42545 * 4 2 1 6 6 C 1.53045 * 109.53817 * 298.62962 * 5 4 2 7 7 H 1.08994 * 109.50231 * 301.42096 * 6 5 4 8 8 N 1.46500 * 109.49979 * 181.31796 * 6 5 4 9 9 C 1.34769 * 119.99931 * 155.16521 * 8 6 5 10 10 O 1.21690 * 120.00239 * 0.02562 * 9 8 6 11 11 C 1.46684 * 120.00111 * 180.02562 * 9 8 6 12 12 S 1.76212 * 126.12801 * 359.69280 * 11 9 8 13 13 C 1.70954 * 90.31286 * 179.97438 * 12 11 9 14 14 N 1.29434 * 110.39257 * 0.34361 * 13 12 11 15 15 C 1.30938 * 117.36064 * 359.72776 * 14 13 12 16 16 C 1.50697 * 122.90479 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.49919 * 8.66364 * 16 15 14 18 18 C 1.52998 * 117.50031 * 300.04093 * 16 15 14 19 19 C 1.53201 * 109.30799 * 61.36868 * 6 5 4 20 20 N 1.46920 * 109.58551 * 239.71870 * 2 1 3 21 21 C 1.36936 * 120.63115 * 6.62075 * 20 2 1 22 22 H 1.08004 * 120.00194 * 330.16138 * 21 20 2 23 23 C 1.38822 * 119.99855 * 150.15781 * 21 20 2 24 24 N 1.31620 * 119.99894 * 344.49212 * 23 21 20 25 25 Si 1.86801 * 119.99668 * 164.49152 * 23 21 20 26 26 H 1.48506 * 109.46773 * 90.00394 * 25 23 21 27 27 H 1.48501 * 109.46790 * 210.00013 * 25 23 21 28 28 H 1.48498 * 109.47308 * 330.00413 * 25 23 21 29 29 H 1.09000 * 109.47123 * 180.28580 * 1 2 3 30 30 H 1.09007 * 109.47196 * 300.28328 * 1 2 3 31 31 H 1.08998 * 109.47588 * 60.28210 * 1 2 3 32 32 H 1.09004 * 109.49524 * 294.37550 * 4 2 1 33 33 H 1.09000 * 109.49817 * 54.46895 * 4 2 1 34 34 H 1.09006 * 109.45844 * 178.61587 * 5 4 2 35 35 H 1.08998 * 109.46826 * 58.65429 * 5 4 2 36 36 H 0.97002 * 119.99704 * 335.16254 * 8 6 5 37 37 H 1.08005 * 124.80627 * 180.02562 * 13 12 11 38 38 H 1.09006 * 115.55266 * 154.36892 * 16 15 14 39 39 H 1.09001 * 117.49669 * 0.02562 * 17 16 15 40 40 H 1.09003 * 117.50278 * 145.01859 * 17 16 15 41 41 H 1.09003 * 117.50398 * 214.97665 * 18 16 15 42 42 H 1.09002 * 117.49889 * 359.97438 * 18 16 15 43 43 H 1.09003 * 109.58526 * 185.58007 * 19 6 5 44 44 H 1.08993 * 109.58627 * 65.15231 * 19 6 5 45 45 H 0.96997 * 119.99522 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5675 -0.8493 1.1690 6 6 3.9569 -1.6656 -0.0656 7 1 3.4984 -2.6527 -0.0087 8 7 5.4143 -1.8051 -0.1198 9 6 5.9677 -2.8453 -0.7741 10 8 5.2570 -3.6684 -1.3201 11 6 7.4269 -2.9853 -0.8279 12 16 8.6030 -1.8903 -0.1049 13 6 9.8818 -2.8624 -0.6902 14 7 9.4144 -3.8726 -1.3508 15 6 8.1129 -3.9772 -1.4492 16 6 7.4356 -5.1018 -2.1891 17 6 8.3122 -6.2598 -2.6702 18 6 7.7485 -5.2568 -3.6787 19 6 3.4650 -0.9452 -1.3250 20 7 2.0225 -0.6980 -1.1953 21 6 1.1537 -1.1100 -2.1703 22 1 0.1396 -1.3773 -1.9121 23 6 1.5763 -1.1839 -3.4905 24 7 2.6871 -0.5825 -3.8606 25 14 0.5686 -2.1369 -4.7418 26 1 -0.4251 -1.2302 -5.3710 27 1 1.4688 -2.6865 -5.7872 28 1 -0.1391 -3.2515 -4.0620 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3634 0.5183 0.8875 31 1 -0.3634 0.5094 -0.8925 32 1 1.7660 -0.1694 2.1366 33 1 1.6030 -1.7269 1.2892 34 1 3.9378 -1.3473 2.0652 35 1 4.0062 0.1461 1.0994 36 1 5.9808 -1.1487 0.3151 37 1 10.9312 -2.6593 -0.5354 38 1 6.4239 -5.3391 -1.8600 39 1 9.3788 -6.2084 -2.4512 40 1 7.8774 -7.2593 -2.6576 41 1 6.9428 -5.5964 -4.3296 42 1 8.4439 -4.5451 -4.1237 43 1 3.6517 -1.5689 -2.1992 44 1 3.9902 0.0039 -1.4317 45 1 2.9826 -0.6346 -4.7830 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071883860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:53 Heat of formation + Delta-G solvation = 56.761709 kcal Electronic energy + Delta-G solvation = -27225.718402 eV Core-core repulsion = 23564.478912 eV Total energy + Delta-G solvation = -3661.239491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.48619 -39.17580 -37.53369 -36.42900 -34.44923 -32.82102 -31.33473 -30.20446 -29.77939 -26.60905 -25.69005 -24.87315 -23.00545 -22.31045 -22.24032 -21.64561 -20.35193 -19.64939 -18.94484 -18.04509 -16.88515 -16.38890 -15.82935 -15.44411 -15.31633 -14.84199 -14.50930 -14.33505 -14.00715 -13.80026 -13.73916 -13.49702 -13.36531 -12.75554 -12.43738 -12.32520 -11.92552 -11.60948 -11.43947 -11.43313 -11.12616 -10.90232 -10.74691 -10.68521 -10.55672 -10.40767 -10.32546 -10.26602 -10.05402 -9.96183 -9.75745 -9.62952 -9.46570 -9.40223 -8.81017 -8.56751 -8.41163 -6.59923 -5.73329 -3.17978 0.18318 1.08123 1.44740 2.37501 3.31381 3.41908 3.44040 3.50351 3.52422 3.93741 4.10596 4.54635 4.66425 4.85345 5.01982 5.11291 5.20138 5.32562 5.36215 5.43898 5.50025 5.56903 5.66129 5.73357 5.86272 5.95398 6.04963 6.08655 6.23297 6.25841 6.28552 6.34866 6.38596 6.44738 6.48125 6.61854 6.71831 6.87166 7.04519 7.12661 7.29481 7.47393 7.72772 7.79391 7.88279 8.46784 8.52337 9.25329 9.89658 10.45190 11.34925 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.004047 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.569607 B = 6917.513766 C = 8578.063991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.117 3.883 7 H 0.085 0.915 8 N -0.713 5.713 9 C 0.592 3.408 10 O -0.510 6.510 11 C -0.273 4.273 12 S 0.156 5.844 13 C 0.029 3.971 14 N -0.471 5.471 15 C 0.168 3.832 16 C -0.096 4.096 17 C -0.165 4.165 18 C -0.155 4.155 19 C 0.169 3.831 20 N -0.583 5.583 21 C -0.254 4.254 22 H 0.070 0.930 23 C 0.008 3.992 24 N -0.899 5.899 25 Si 0.899 3.101 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.278 1.278 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.389 0.611 37 H 0.204 0.796 38 H 0.145 0.855 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.017 0.983 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.356 -2.648 10.093 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.103 0.897 8 N -0.363 5.363 9 C 0.375 3.625 10 O -0.387 6.387 11 C -0.397 4.397 12 S 0.410 5.590 13 C -0.267 4.267 14 N -0.184 5.184 15 C 0.031 3.969 16 C -0.116 4.116 17 C -0.203 4.203 18 C -0.193 4.193 19 C 0.042 3.958 20 N -0.306 5.306 21 C -0.384 4.384 22 H 0.087 0.913 23 C -0.191 4.191 24 N -0.543 5.543 25 Si 0.729 3.271 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.204 1.204 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.222 0.778 37 H 0.221 0.779 38 H 0.162 0.838 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.035 0.965 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.257 -2.624 9.908 16.757 hybrid contribution -0.233 -0.575 -0.891 1.085 sum 13.024 -3.199 9.017 16.161 Atomic orbital electron populations 1.21802 0.95969 1.01387 1.00225 1.20494 0.93107 0.93548 0.87039 0.95750 1.22042 0.94127 1.01384 0.98971 1.21688 0.97561 0.99648 0.96608 1.22076 0.76943 1.01191 0.98547 0.89674 1.45997 1.09025 1.26229 1.55061 1.16603 0.84333 0.82214 0.79310 1.90825 1.61225 1.41961 1.44668 1.25626 0.99128 1.02497 1.12477 1.83865 0.97854 1.27022 1.50238 1.28602 1.04844 0.93964 0.99279 1.65954 1.13140 1.21540 1.17759 1.19719 0.86695 0.95010 0.95443 1.20908 1.00341 0.94226 0.96154 1.22973 0.99969 0.93986 1.03326 1.22911 1.03238 1.02278 0.90864 1.21068 0.83662 0.96860 0.94223 1.44010 1.02560 1.64822 1.19205 1.19115 0.95049 1.38277 0.85935 0.91254 1.25083 0.97750 0.99240 0.97053 1.70000 1.24024 1.43576 1.16712 0.86351 0.79357 0.80050 0.81341 1.21473 1.21570 1.20388 0.92799 0.94359 0.91964 0.92612 0.92004 0.93015 0.92233 0.77773 0.77907 0.83783 0.88002 0.88553 0.88009 0.88922 0.88780 0.96490 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.95 37.16 0.30 -2.24 16 2 C 0.16 3.34 3.50 -67.60 -0.24 3.10 16 3 H 0.02 0.52 8.14 -51.92 -0.42 0.09 16 4 C -0.13 -2.10 5.37 -26.62 -0.14 -2.24 16 5 C -0.12 -1.86 5.35 -26.69 -0.14 -2.00 16 6 C 0.12 2.26 2.60 -67.80 -0.18 2.09 16 7 H 0.09 1.85 7.58 -51.93 -0.39 1.45 16 8 N -0.71 -11.90 5.08 -54.99 -0.28 -12.18 16 9 C 0.59 10.76 7.75 -12.85 -0.10 10.66 16 10 O -0.51 -11.13 13.99 5.20 0.07 -11.05 16 11 C -0.27 -4.14 6.48 -37.09 -0.24 -4.38 16 12 S 0.16 1.61 22.35 -107.50 -2.40 -0.80 16 13 C 0.03 0.28 12.22 51.75 0.63 0.92 16 14 N -0.47 -6.18 9.80 -11.53 -0.11 -6.29 16 15 C 0.17 2.54 6.41 -83.89 -0.54 2.00 16 16 C -0.10 -1.46 5.44 -91.78 -0.50 -1.96 16 17 C -0.17 -2.04 10.08 -26.73 -0.27 -2.31 16 18 C -0.16 -2.13 10.23 -26.73 -0.27 -2.40 16 19 C 0.17 4.06 4.86 -3.71 -0.02 4.05 16 20 N -0.58 -14.41 2.99 -164.77 -0.49 -14.90 16 21 C -0.25 -6.93 8.57 -15.06 -0.13 -7.06 16 22 H 0.07 1.84 6.24 -52.48 -0.33 1.51 16 23 C 0.01 0.22 4.94 -17.43 -0.09 0.14 16 24 N -0.90 -26.63 11.23 55.49 0.62 -26.00 16 25 Si 0.90 22.36 29.58 -169.99 -5.03 17.33 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 H 0.05 1.02 7.44 -51.93 -0.39 0.63 16 30 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.06 1.25 7.63 -51.93 -0.40 0.86 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.39 5.29 7.79 -40.82 -0.32 4.98 16 37 H 0.20 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.14 2.46 6.17 -51.93 -0.32 2.14 16 39 H 0.10 1.23 7.74 -51.93 -0.40 0.83 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.09 2.68 6.15 -51.93 -0.32 2.36 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -32.48 372.62 -10.58 -43.06 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.65 Total: 6.87 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -1.92 Total: -1.65 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.26 Total: -59.38 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.07 Total: -11.05 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.40 Total: -0.80 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.48 -10.58 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.817 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds