Wall clock time and date at job start Tue Mar 31 2020 19:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.58278 * 2 1 4 4 C 1.53190 * 109.58753 * 120.42723 * 2 1 3 5 5 C 1.53034 * 109.31105 * 174.42545 * 4 2 1 6 6 C 1.53045 * 109.53817 * 298.62962 * 5 4 2 7 7 H 1.08994 * 109.50231 * 301.42096 * 6 5 4 8 8 N 1.46500 * 109.49979 * 181.31796 * 6 5 4 9 9 C 1.34769 * 119.99931 * 155.16521 * 8 6 5 10 10 O 1.21690 * 120.00239 * 0.02562 * 9 8 6 11 11 C 1.46684 * 120.00111 * 180.02562 * 9 8 6 12 12 S 1.76212 * 126.12801 * 359.69280 * 11 9 8 13 13 C 1.70954 * 90.31286 * 179.97438 * 12 11 9 14 14 N 1.29434 * 110.39257 * 0.34361 * 13 12 11 15 15 C 1.30938 * 117.36064 * 359.72776 * 14 13 12 16 16 C 1.50697 * 122.90479 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.49919 * 8.66364 * 16 15 14 18 18 C 1.52998 * 117.50031 * 300.04093 * 16 15 14 19 19 C 1.53201 * 109.30799 * 61.36868 * 6 5 4 20 20 N 1.46920 * 109.58551 * 239.71870 * 2 1 3 21 21 C 1.36936 * 120.63115 * 6.62075 * 20 2 1 22 22 H 1.08004 * 120.00194 * 330.16138 * 21 20 2 23 23 C 1.38822 * 119.99855 * 150.15781 * 21 20 2 24 24 N 1.31620 * 119.99894 * 344.49212 * 23 21 20 25 25 Si 1.86801 * 119.99668 * 164.49152 * 23 21 20 26 26 H 1.48506 * 109.46773 * 90.00394 * 25 23 21 27 27 H 1.48501 * 109.46790 * 210.00013 * 25 23 21 28 28 H 1.48498 * 109.47308 * 330.00413 * 25 23 21 29 29 H 1.09000 * 109.47123 * 180.28580 * 1 2 3 30 30 H 1.09007 * 109.47196 * 300.28328 * 1 2 3 31 31 H 1.08998 * 109.47588 * 60.28210 * 1 2 3 32 32 H 1.09004 * 109.49524 * 294.37550 * 4 2 1 33 33 H 1.09000 * 109.49817 * 54.46895 * 4 2 1 34 34 H 1.09006 * 109.45844 * 178.61587 * 5 4 2 35 35 H 1.08998 * 109.46826 * 58.65429 * 5 4 2 36 36 H 0.97002 * 119.99704 * 335.16254 * 8 6 5 37 37 H 1.08005 * 124.80627 * 180.02562 * 13 12 11 38 38 H 1.09006 * 115.55266 * 154.36892 * 16 15 14 39 39 H 1.09001 * 117.49669 * 0.02562 * 17 16 15 40 40 H 1.09003 * 117.50278 * 145.01859 * 17 16 15 41 41 H 1.09003 * 117.50398 * 214.97665 * 18 16 15 42 42 H 1.09002 * 117.49889 * 359.97438 * 18 16 15 43 43 H 1.09003 * 109.58526 * 185.58007 * 19 6 5 44 44 H 1.08993 * 109.58627 * 65.15231 * 19 6 5 45 45 H 0.96997 * 119.99522 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5675 -0.8493 1.1690 6 6 3.9569 -1.6656 -0.0656 7 1 3.4984 -2.6527 -0.0087 8 7 5.4143 -1.8051 -0.1198 9 6 5.9677 -2.8453 -0.7741 10 8 5.2570 -3.6684 -1.3201 11 6 7.4269 -2.9853 -0.8279 12 16 8.6030 -1.8903 -0.1049 13 6 9.8818 -2.8624 -0.6902 14 7 9.4144 -3.8726 -1.3508 15 6 8.1129 -3.9772 -1.4492 16 6 7.4356 -5.1018 -2.1891 17 6 8.3122 -6.2598 -2.6702 18 6 7.7485 -5.2568 -3.6787 19 6 3.4650 -0.9452 -1.3250 20 7 2.0225 -0.6980 -1.1953 21 6 1.1537 -1.1100 -2.1703 22 1 0.1396 -1.3773 -1.9121 23 6 1.5763 -1.1839 -3.4905 24 7 2.6871 -0.5825 -3.8606 25 14 0.5686 -2.1369 -4.7418 26 1 -0.4251 -1.2302 -5.3710 27 1 1.4688 -2.6865 -5.7872 28 1 -0.1391 -3.2515 -4.0620 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3634 0.5183 0.8875 31 1 -0.3634 0.5094 -0.8925 32 1 1.7660 -0.1694 2.1366 33 1 1.6030 -1.7269 1.2892 34 1 3.9378 -1.3473 2.0652 35 1 4.0062 0.1461 1.0994 36 1 5.9808 -1.1487 0.3151 37 1 10.9312 -2.6593 -0.5354 38 1 6.4239 -5.3391 -1.8600 39 1 9.3788 -6.2084 -2.4512 40 1 7.8774 -7.2593 -2.6576 41 1 6.9428 -5.5964 -4.3296 42 1 8.4439 -4.5451 -4.1237 43 1 3.6517 -1.5689 -2.1992 44 1 3.9902 0.0039 -1.4317 45 1 2.9826 -0.6346 -4.7830 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071883860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:52 Heat of formation + Delta-G solvation = 35.295308 kcal Electronic energy + Delta-G solvation = -27226.649255 eV Core-core repulsion = 23564.478912 eV Total energy + Delta-G solvation = -3662.170344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.61351 -40.55623 -39.12952 -37.49039 -36.05653 -34.67453 -32.72841 -31.81946 -31.27929 -27.97518 -27.28774 -26.42480 -24.22918 -23.88547 -23.30647 -22.94904 -21.90571 -21.20945 -20.28667 -19.08787 -18.34279 -18.03892 -17.18814 -17.05924 -16.61498 -16.18248 -15.82312 -15.72464 -15.37953 -15.31201 -15.15648 -14.92369 -14.78994 -14.44079 -14.14809 -13.52709 -13.38908 -13.10079 -12.80743 -12.73075 -12.62339 -12.55828 -12.45978 -12.30515 -12.14872 -12.00960 -11.79753 -11.67514 -11.49218 -11.36373 -11.17372 -11.11640 -10.70367 -10.64051 -10.53968 -10.15743 -9.72838 -8.62526 -7.86391 -5.32477 -0.80951 0.14924 0.52546 1.34005 1.39652 1.43995 1.51326 1.97220 2.10230 2.49840 2.94169 3.10572 3.30576 3.55887 3.67357 3.83102 3.90460 4.00322 4.07152 4.07651 4.20219 4.23617 4.37625 4.45148 4.58860 4.68805 4.70313 4.78143 4.82609 4.87610 5.00352 5.00539 5.05744 5.14045 5.17927 5.23263 5.28999 5.31394 5.41034 5.54809 5.60477 5.70067 5.77157 6.36873 6.44198 6.56213 7.11353 7.17277 7.89225 8.38777 9.18893 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.004047 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.569607 B = 6917.513766 C = 8578.063991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.117 4.117 5 C -0.109 4.109 6 C 0.132 3.868 7 H 0.056 0.944 8 N -0.703 5.703 9 C 0.587 3.413 10 O -0.561 6.561 11 C -0.325 4.325 12 S 0.225 5.775 13 C 0.050 3.950 14 N -0.494 5.494 15 C 0.168 3.832 16 C -0.125 4.125 17 C -0.135 4.135 18 C -0.161 4.161 19 C 0.182 3.818 20 N -0.602 5.602 21 C -0.251 4.251 22 H 0.075 0.925 23 C -0.051 4.051 24 N -0.933 5.933 25 Si 0.955 3.045 26 H -0.278 1.278 27 H -0.300 1.300 28 H -0.272 1.272 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.407 0.593 37 H 0.254 0.746 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.041 0.959 44 H -0.003 1.003 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.086 -1.975 12.936 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.156 4.156 5 C -0.146 4.146 6 C 0.027 3.973 7 H 0.074 0.926 8 N -0.354 5.354 9 C 0.373 3.627 10 O -0.441 6.441 11 C -0.449 4.449 12 S 0.481 5.519 13 C -0.245 4.245 14 N -0.208 5.208 15 C 0.030 3.970 16 C -0.146 4.146 17 C -0.173 4.173 18 C -0.198 4.198 19 C 0.054 3.946 20 N -0.327 5.327 21 C -0.382 4.382 22 H 0.092 0.908 23 C -0.246 4.246 24 N -0.579 5.579 25 Si 0.783 3.217 26 H -0.204 1.204 27 H -0.227 1.227 28 H -0.197 1.197 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.243 0.757 37 H 0.269 0.731 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.060 0.940 44 H 0.015 0.985 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.992 -1.908 12.818 19.816 hybrid contribution -0.688 -0.718 -1.708 1.976 sum 14.304 -2.626 11.109 18.301 Atomic orbital electron populations 1.21735 0.94735 1.01150 1.01066 1.20818 0.94323 0.93388 0.86685 0.96017 1.21947 0.94319 1.00965 0.98392 1.21670 0.97316 0.99976 0.95687 1.21606 0.78225 0.99519 0.97999 0.92574 1.45787 1.08186 1.26490 1.54965 1.17094 0.85809 0.81585 0.78195 1.90793 1.63037 1.43707 1.46572 1.25384 0.98334 1.05359 1.15805 1.83533 0.95403 1.24602 1.48346 1.29526 1.06863 0.92025 0.96071 1.66013 1.11816 1.23316 1.19682 1.19767 0.87741 0.94606 0.94870 1.20835 0.99999 0.96535 0.97204 1.23020 0.99918 0.93770 1.00545 1.22928 1.03410 1.03175 0.90336 1.20730 0.83877 0.95163 0.94800 1.44307 1.02430 1.65744 1.20174 1.19459 0.95510 1.36646 0.86554 0.90781 1.25789 0.99031 1.00841 0.98986 1.70160 1.25831 1.45651 1.16291 0.85463 0.78016 0.79090 0.79112 1.20446 1.22731 1.19660 0.93550 0.90227 0.94363 0.88408 0.92828 0.89509 0.90762 0.75714 0.73065 0.86715 0.87093 0.86958 0.88288 0.88948 0.94023 0.98500 0.94713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 7.95 71.98 0.57 -4.06 16 2 C 0.15 6.05 3.50 44.98 0.16 6.21 16 3 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 4 C -0.12 -3.59 5.37 30.67 0.16 -3.42 16 5 C -0.11 -3.19 5.35 30.62 0.16 -3.02 16 6 C 0.13 5.20 2.60 45.07 0.12 5.32 16 7 H 0.06 2.55 7.58 -2.39 -0.02 2.53 16 8 N -0.70 -23.82 5.08 -446.12 -2.27 -26.08 16 9 C 0.59 22.43 7.75 86.45 0.67 23.10 16 10 O -0.56 -26.63 13.99 -4.32 -0.06 -26.69 16 11 C -0.32 -9.92 6.48 23.88 0.15 -9.76 16 12 S 0.23 4.04 22.35 -56.49 -1.26 2.78 16 13 C 0.05 0.79 12.22 130.60 1.60 2.39 16 14 N -0.49 -12.08 9.80 -190.39 -1.87 -13.94 16 15 C 0.17 5.12 6.41 42.09 0.27 5.39 16 16 C -0.13 -4.01 5.44 -11.54 -0.06 -4.07 16 17 C -0.14 -3.31 10.08 30.59 0.31 -3.00 16 18 C -0.16 -4.59 10.23 30.59 0.31 -4.28 16 19 C 0.18 9.17 4.86 86.37 0.42 9.59 16 20 N -0.60 -30.63 2.99 -675.21 -2.02 -32.65 16 21 C -0.25 -14.16 8.57 84.04 0.72 -13.44 16 22 H 0.07 4.02 6.24 -2.91 -0.02 4.00 16 23 C -0.05 -3.02 4.94 84.86 0.42 -2.60 16 24 N -0.93 -58.45 11.23 21.65 0.24 -58.21 16 25 Si 0.95 47.91 29.58 68.60 2.03 49.94 16 26 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 27 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 28 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 29 H 0.05 1.71 7.44 -2.39 -0.02 1.69 16 30 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.04 1.52 7.63 -2.39 -0.02 1.50 16 32 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.41 10.60 7.79 -92.71 -0.72 9.88 16 37 H 0.25 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.11 4.34 6.17 -2.38 -0.01 4.33 16 39 H 0.11 2.53 7.74 -2.39 -0.02 2.51 16 40 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.04 2.54 6.15 -2.39 -0.01 2.53 16 44 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -78.42 372.62 1.08 -77.35 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.29 Total: 23.17 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 5.98 Total: 4.33 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -5.90 Total: -130.88 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.06 Total: -26.69 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.26 Total: 2.78 kcal Total: -78.42 1.08 -77.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.641 kcal (2) G-P(sol) polarization free energy of solvation -78.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds