Wall clock time and date at job start Tue Mar 31 2020 19:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.69865 * 2 1 4 4 C 1.53191 * 109.58496 * 239.64803 * 2 1 3 5 5 C 1.53044 * 109.31388 * 185.57558 * 4 2 1 6 6 C 1.53047 * 109.53509 * 61.36356 * 5 4 2 7 7 H 1.09006 * 109.52162 * 58.60501 * 6 5 4 8 8 N 1.46490 * 109.49580 * 178.68230 * 6 5 4 9 9 C 1.34783 * 120.00115 * 204.83631 * 8 6 5 10 10 O 1.21687 * 119.99742 * 0.02562 * 9 8 6 11 11 C 1.46684 * 120.00022 * 180.02562 * 9 8 6 12 12 S 1.76211 * 126.13242 * 359.97356 * 11 9 8 13 13 C 1.70945 * 90.31481 * 180.02562 * 12 11 9 14 14 N 1.29428 * 110.39215 * 0.02562 * 13 12 11 15 15 C 1.30943 * 117.36407 * 0.02562 * 14 13 12 16 16 C 1.50695 * 122.90466 * 180.02562 * 15 14 13 17 17 C 1.52999 * 117.50242 * 8.71856 * 16 15 14 18 18 C 1.53002 * 117.49743 * 300.05876 * 16 15 14 19 19 C 1.53191 * 109.31299 * 298.63678 * 6 5 4 20 20 N 1.46923 * 108.77735 * 54.63638 * 19 6 5 21 21 C 1.36936 * 120.63749 * 126.36496 * 20 19 6 22 22 H 1.07990 * 120.00767 * 209.03031 * 21 20 19 23 23 C 1.38819 * 119.99345 * 29.02993 * 21 20 19 24 24 N 1.31626 * 119.99847 * 15.02212 * 23 21 20 25 25 Si 1.86795 * 119.99892 * 195.01918 * 23 21 20 26 26 H 1.48501 * 109.47239 * 60.00031 * 25 23 21 27 27 H 1.48508 * 109.47288 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47216 * 299.99785 * 25 23 21 29 29 H 1.09000 * 109.46941 * 299.64057 * 1 2 3 30 30 H 1.09005 * 109.47003 * 59.64220 * 1 2 3 31 31 H 1.09000 * 109.47083 * 179.64172 * 1 2 3 32 32 H 1.09001 * 109.49843 * 305.52653 * 4 2 1 33 33 H 1.09003 * 109.50144 * 65.59252 * 4 2 1 34 34 H 1.08995 * 109.46259 * 301.34925 * 5 4 2 35 35 H 1.08996 * 109.46066 * 181.37875 * 5 4 2 36 36 H 0.97002 * 120.00503 * 24.84669 * 8 6 5 37 37 H 1.07999 * 124.80704 * 179.97438 * 13 12 11 38 38 H 1.08999 * 115.55408 * 154.39203 * 16 15 14 39 39 H 1.09004 * 117.49386 * 359.97438 * 17 16 15 40 40 H 1.08998 * 117.50363 * 145.01761 * 17 16 15 41 41 H 1.09000 * 117.49843 * 214.97782 * 18 16 15 42 42 H 1.08998 * 117.50315 * 359.97438 * 18 16 15 43 43 H 1.08996 * 109.58554 * 174.41703 * 19 6 5 44 44 H 1.08996 * 109.58634 * 294.70194 * 19 6 5 45 45 H 0.96999 * 119.99673 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5675 -0.8479 -1.1703 6 6 3.9569 -1.6657 0.0634 7 1 3.4987 -2.6531 0.0053 8 7 5.4142 -1.8053 0.1173 9 6 5.9677 -2.8464 0.7702 10 8 5.2569 -3.6706 1.3145 11 6 7.4269 -2.9859 0.8247 12 16 8.6030 -1.8939 0.0972 13 6 9.8817 -2.8632 0.6865 14 7 9.4144 -3.8749 1.3448 15 6 8.1128 -3.9800 1.4425 16 6 7.4356 -5.1064 2.1798 17 6 8.3201 -6.0440 3.0039 18 6 7.7021 -6.5316 1.6911 19 6 3.4651 -0.9470 1.3236 20 7 2.0226 -0.6996 1.1944 21 6 1.1536 -1.1136 2.1684 22 1 0.1360 -1.3682 1.9116 23 6 1.5808 -1.2060 3.4860 24 7 2.7039 -0.6277 3.8558 25 14 0.5618 -2.1511 4.7341 26 1 0.4326 -3.5650 4.2989 27 1 1.2300 -2.0997 6.0594 28 1 -0.7874 -1.5393 4.8366 29 1 -0.3633 0.5082 0.8932 30 1 -0.3633 0.5194 -0.8868 31 1 -0.3633 -1.0276 -0.0064 32 1 1.6030 -1.7253 -1.2914 33 1 1.7655 -0.1670 -2.1369 34 1 4.0061 0.1474 -1.0994 35 1 3.9377 -1.3448 -2.0670 36 1 5.9808 -1.1485 -0.3168 37 1 10.9311 -2.6606 0.5309 38 1 6.4407 -4.8846 2.5658 39 1 9.3921 -5.8464 3.0125 40 1 7.9071 -6.4393 3.9320 41 1 6.8827 -7.2474 1.7561 42 1 8.3670 -6.6545 0.8361 43 1 3.6518 -1.5718 2.1970 44 1 3.9922 0.0008 1.4330 45 1 3.0026 -0.6926 4.7763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071883862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:58 Heat of formation + Delta-G solvation = 35.677913 kcal Electronic energy + Delta-G solvation = -27203.071008 eV Core-core repulsion = 23540.917255 eV Total energy + Delta-G solvation = -3662.153753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.61109 -40.55446 -39.12988 -37.48015 -36.05575 -34.68025 -32.72830 -31.80993 -31.27527 -27.97528 -27.28931 -26.42548 -24.22172 -23.88334 -23.30083 -22.94925 -21.90419 -21.21002 -20.28363 -19.08154 -18.35198 -18.03067 -17.19007 -17.09404 -16.46412 -16.32275 -15.88251 -15.60991 -15.37725 -15.28955 -15.17737 -14.97334 -14.74512 -14.44568 -14.13979 -13.53810 -13.37577 -13.08963 -12.77929 -12.74273 -12.62872 -12.57426 -12.44733 -12.30543 -12.14506 -12.01234 -11.79240 -11.67349 -11.49021 -11.35797 -11.17168 -11.11655 -10.69732 -10.64256 -10.53475 -10.15885 -9.72639 -8.63532 -7.85884 -5.31872 -0.80626 0.15082 0.52701 1.34475 1.40020 1.45416 1.49442 1.97255 2.10747 2.49966 2.93269 3.12513 3.30676 3.55316 3.66925 3.82995 3.91165 4.00373 4.07518 4.09355 4.20860 4.23925 4.37556 4.45804 4.58987 4.68936 4.70178 4.78237 4.83108 4.87523 5.00303 5.01225 5.05639 5.15261 5.18572 5.23380 5.28988 5.31813 5.41594 5.54632 5.61061 5.69540 5.78271 6.36805 6.44216 6.56394 7.11604 7.17367 7.89409 8.38371 9.19089 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.003950 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.778816 B = 7087.460107 C = 8564.646792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.117 4.117 5 C -0.109 4.109 6 C 0.132 3.868 7 H 0.055 0.945 8 N -0.703 5.703 9 C 0.587 3.413 10 O -0.561 6.561 11 C -0.325 4.325 12 S 0.225 5.775 13 C 0.050 3.950 14 N -0.494 5.494 15 C 0.169 3.831 16 C -0.130 4.130 17 C -0.146 4.146 18 C -0.145 4.145 19 C 0.180 3.820 20 N -0.602 5.602 21 C -0.251 4.251 22 H 0.076 0.924 23 C -0.053 4.053 24 N -0.934 5.934 25 Si 0.956 3.044 26 H -0.285 1.285 27 H -0.298 1.298 28 H -0.267 1.267 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.407 0.593 37 H 0.254 0.746 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.044 0.956 44 H -0.003 1.003 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.005 -2.161 -13.415 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.157 4.157 5 C -0.146 4.146 6 C 0.027 3.973 7 H 0.073 0.927 8 N -0.354 5.354 9 C 0.373 3.627 10 O -0.441 6.441 11 C -0.449 4.449 12 S 0.481 5.519 13 C -0.245 4.245 14 N -0.208 5.208 15 C 0.031 3.969 16 C -0.150 4.150 17 C -0.184 4.184 18 C -0.182 4.182 19 C 0.053 3.947 20 N -0.327 5.327 21 C -0.381 4.381 22 H 0.093 0.907 23 C -0.248 4.248 24 N -0.581 5.581 25 Si 0.784 3.216 26 H -0.212 1.212 27 H -0.224 1.224 28 H -0.192 1.192 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.243 0.757 37 H 0.269 0.731 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.062 0.938 44 H 0.015 0.985 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.909 -2.089 -13.291 20.082 hybrid contribution -0.687 -0.731 1.714 1.986 sum 14.222 -2.819 -11.577 18.554 Atomic orbital electron populations 1.21736 0.94707 1.01169 1.01082 1.20818 0.94323 0.93398 0.86667 0.95967 1.21954 0.94315 1.00972 0.98413 1.21670 0.97323 0.99959 0.95694 1.21604 0.78231 0.99480 0.98027 0.92657 1.45788 1.08180 1.26438 1.55030 1.17099 0.85822 0.81549 0.78228 1.90794 1.63019 1.43829 1.46460 1.25381 0.98326 1.05546 1.15652 1.83525 0.95402 1.24986 1.47995 1.29522 1.06860 0.92070 0.96027 1.66014 1.11802 1.23364 1.19660 1.19758 0.87729 0.94715 0.94719 1.20814 1.00056 0.89038 1.05138 1.23029 0.99598 1.00504 0.95221 1.22958 1.03220 0.93380 0.98677 1.20753 0.83827 0.95260 0.94901 1.44309 1.02437 1.65620 1.20298 1.19457 0.95204 1.36743 0.86734 0.90664 1.25782 0.98993 1.01036 0.98959 1.70154 1.25074 1.46358 1.16469 0.85508 0.78787 0.78996 0.78264 1.21198 1.22440 1.19240 0.94351 0.90206 0.93528 0.92859 0.88397 0.90753 0.89542 0.75727 0.73064 0.87400 0.87209 0.87588 0.87667 0.88154 0.93755 0.98518 0.94725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 7.94 71.98 0.57 -4.06 16 2 C 0.15 6.05 3.50 44.97 0.16 6.21 16 3 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -3.60 5.37 30.67 0.16 -3.44 16 5 C -0.11 -3.20 5.35 30.62 0.16 -3.03 16 6 C 0.13 5.23 2.60 45.07 0.12 5.35 16 7 H 0.06 2.53 7.58 -2.38 -0.02 2.51 16 8 N -0.70 -23.95 5.08 -446.12 -2.27 -26.22 16 9 C 0.59 22.55 7.75 86.45 0.67 23.22 16 10 O -0.56 -26.80 13.98 -4.31 -0.06 -26.86 16 11 C -0.33 -9.97 6.48 23.88 0.15 -9.82 16 12 S 0.22 4.06 22.35 -56.49 -1.26 2.80 16 13 C 0.05 0.80 12.22 130.60 1.60 2.39 16 14 N -0.49 -12.12 9.81 -190.41 -1.87 -13.98 16 15 C 0.17 5.16 6.41 42.09 0.27 5.43 16 16 C -0.13 -4.18 5.44 -11.54 -0.06 -4.25 16 17 C -0.15 -3.67 10.09 30.62 0.31 -3.36 16 18 C -0.14 -3.70 10.24 30.62 0.31 -3.39 16 19 C 0.18 9.11 4.86 86.36 0.42 9.53 16 20 N -0.60 -30.67 2.99 -675.25 -2.02 -32.68 16 21 C -0.25 -14.15 8.60 84.04 0.72 -13.43 16 22 H 0.08 4.07 6.21 -2.92 -0.02 4.05 16 23 C -0.05 -3.11 4.96 84.86 0.42 -2.69 16 24 N -0.93 -58.60 11.14 21.65 0.24 -58.36 16 25 Si 0.96 47.97 29.58 68.60 2.03 50.00 16 26 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 28 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 29 H 0.04 1.52 7.62 -2.39 -0.02 1.50 16 30 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.05 1.71 7.44 -2.39 -0.02 1.69 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.41 10.66 7.79 -92.71 -0.72 9.94 16 37 H 0.25 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.11 4.31 6.16 -2.39 -0.01 4.30 16 39 H 0.11 2.59 7.74 -2.39 -0.02 2.57 16 40 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.04 2.71 6.06 -2.39 -0.01 2.70 16 44 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.24 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -78.59 372.45 1.08 -77.51 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.29 Total: 23.13 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 5.99 Total: 4.67 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -5.91 Total: -131.25 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.06 Total: -26.86 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.26 Total: 2.80 kcal Total: -78.59 1.08 -77.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.191 kcal (2) G-P(sol) polarization free energy of solvation -78.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds