Wall clock time and date at job start Tue Mar 31 2020 19:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.59085 * 2 1 4 4 C 1.53193 * 109.58433 * 120.28086 * 2 1 3 5 5 C 1.53041 * 109.31300 * 174.56357 * 4 2 1 6 6 C 1.53044 * 109.53884 * 298.63377 * 5 4 2 7 7 H 1.08998 * 109.49761 * 181.31591 * 6 5 4 8 8 N 1.46497 * 109.49704 * 301.41588 * 6 5 4 9 9 C 1.34771 * 119.99896 * 204.99787 * 8 6 5 10 10 O 1.21632 * 119.99994 * 0.02562 * 9 8 6 11 11 C 1.47268 * 120.00124 * 179.97438 * 9 8 6 12 12 C 1.35214 * 123.14154 * 179.70826 * 11 9 8 13 13 S 1.70939 * 108.82370 * 179.87608 * 12 11 9 14 14 C 1.70772 * 91.13297 * 0.32626 * 13 12 11 15 15 C 1.50695 * 124.72047 * 179.77114 * 14 13 12 16 16 C 1.53000 * 117.49980 * 8.66482 * 15 14 13 17 17 C 1.52999 * 60.00061 * 252.51200 * 16 15 14 18 18 N 1.28645 * 110.55748 * 359.80916 * 14 13 12 19 19 C 1.53191 * 109.30755 * 61.36274 * 6 5 4 20 20 N 1.46917 * 109.70402 * 239.63746 * 2 1 3 21 21 C 1.36945 * 120.63269 * 6.51524 * 20 2 1 22 22 H 1.07999 * 119.99653 * 330.19743 * 21 20 2 23 23 C 1.38810 * 120.00178 * 150.19385 * 21 20 2 24 24 N 1.31620 * 119.99942 * 344.48884 * 23 21 20 25 25 Si 1.86795 * 119.99872 * 164.48482 * 23 21 20 26 26 H 1.48497 * 109.47152 * 60.00445 * 25 23 21 27 27 H 1.48507 * 109.47028 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47373 * 300.00024 * 25 23 21 29 29 H 1.09000 * 109.47021 * 300.00230 * 1 2 3 30 30 H 1.08996 * 109.46860 * 60.00275 * 1 2 3 31 31 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.50293 * 294.51312 * 4 2 1 33 33 H 1.08997 * 109.49933 * 54.61186 * 4 2 1 34 34 H 1.09001 * 109.45644 * 58.65504 * 5 4 2 35 35 H 1.09001 * 109.46009 * 178.61472 * 5 4 2 36 36 H 0.96997 * 120.00285 * 24.99505 * 8 6 5 37 37 H 1.07993 * 125.58376 * 0.02562 * 12 11 9 38 38 H 1.09000 * 115.55000 * 154.37578 * 15 14 13 39 39 H 1.08997 * 117.49788 * 359.97438 * 16 15 14 40 40 H 1.08998 * 117.49600 * 145.02281 * 16 15 14 41 41 H 1.09000 * 117.49973 * 252.51280 * 17 16 15 42 42 H 1.08998 * 117.50006 * 107.48822 * 17 16 15 43 43 H 1.09006 * 109.58889 * 65.15964 * 19 6 5 44 44 H 1.09004 * 109.58178 * 185.43292 * 19 6 5 45 45 H 0.97005 * 119.99905 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5678 -0.8434 1.1730 6 6 3.9604 -1.6610 -0.0597 7 1 5.0449 -1.7627 -0.0986 8 7 3.3465 -2.9888 0.0184 9 6 3.9059 -4.0290 -0.6308 10 8 4.9206 -3.8654 -1.2811 11 6 3.2891 -5.3640 -0.5518 12 6 3.7927 -6.4494 -1.1815 13 16 2.7974 -7.7965 -0.8399 14 6 1.7616 -6.8318 0.1155 15 6 0.5318 -7.3360 0.8256 16 6 0.2993 -8.8481 0.8485 17 6 -0.5756 -7.9528 -0.0312 18 7 2.1769 -5.6145 0.1440 19 6 3.4685 -0.9437 -1.3209 20 7 2.0254 -0.6991 -1.1934 21 6 1.1585 -1.1154 -2.1684 22 1 0.1447 -1.3842 -1.9107 23 6 1.5827 -1.1917 -3.4879 24 7 2.6925 -0.5888 -3.8583 25 14 0.5784 -2.1500 -4.7379 26 1 -0.7832 -1.5650 -4.8321 27 1 1.2412 -2.0786 -6.0649 28 1 0.4792 -3.5686 -4.3104 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7639 -0.1654 2.1372 33 1 1.6049 -1.7245 1.2923 34 1 4.0045 0.1528 1.1022 35 1 3.9380 -1.3391 2.0704 36 1 2.5375 -3.1194 0.5374 37 1 4.6798 -6.4634 -1.7973 38 1 0.2299 -6.7667 1.7047 39 1 1.0357 -9.4781 0.3496 40 1 -0.1555 -9.2738 1.7429 41 1 -1.6061 -7.7896 0.2845 42 1 -0.4146 -7.9939 -1.1084 43 1 3.9921 0.0062 -1.4287 44 1 3.6599 -1.5675 -2.1940 45 1 2.9888 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072112751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:25 Heat of formation + Delta-G solvation = 53.998031 kcal Electronic energy + Delta-G solvation = -27651.386775 eV Core-core repulsion = 23990.027443 eV Total energy + Delta-G solvation = -3661.359333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.29993 -38.90368 -37.61369 -36.96973 -34.06257 -32.66756 -30.83454 -30.26279 -29.81028 -26.50569 -25.77357 -24.91322 -23.56291 -22.74602 -22.11357 -20.98090 -20.40791 -19.71111 -18.72802 -18.33481 -16.44890 -16.39534 -16.13101 -15.28667 -15.20921 -14.77165 -14.62664 -14.05093 -14.01846 -13.70043 -13.54659 -13.34352 -13.05179 -12.73456 -12.52349 -12.42176 -12.06690 -11.85342 -11.73144 -11.18308 -11.10947 -11.07823 -10.91361 -10.86500 -10.81585 -10.66267 -10.33800 -10.28046 -9.90931 -9.84190 -9.61143 -9.56238 -9.42517 -9.37303 -8.78450 -8.38881 -8.26789 -6.52801 -5.69175 -3.12714 0.57105 1.20364 1.61702 2.16005 3.41200 3.47748 3.47888 3.48272 3.63062 3.88983 3.97879 4.47208 4.55386 4.62598 4.78748 5.03682 5.28354 5.31116 5.37047 5.41348 5.42308 5.50324 5.54872 5.57697 5.66480 5.70606 5.76695 5.99019 6.07559 6.18080 6.21254 6.39032 6.41106 6.50137 6.58012 6.67832 6.74799 6.95877 7.10718 7.19203 7.41336 7.52216 7.74416 7.89826 8.20439 8.55534 8.80183 9.29766 9.94301 10.50767 11.39025 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.004500 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.351913 B = 6220.980692 C = 6709.115334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.167 3.833 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.116 3.884 7 H 0.076 0.924 8 N -0.678 5.678 9 C 0.590 3.410 10 O -0.543 6.543 11 C 0.028 3.972 12 C -0.231 4.231 13 S 0.188 5.812 14 C 0.056 3.944 15 C -0.082 4.082 16 C -0.170 4.170 17 C -0.160 4.160 18 N -0.434 5.434 19 C 0.163 3.837 20 N -0.581 5.581 21 C -0.246 4.246 22 H 0.066 0.934 23 C 0.006 3.994 24 N -0.900 5.900 25 Si 0.895 3.105 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.287 1.287 29 H 0.037 0.963 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.405 0.595 37 H 0.189 0.811 38 H 0.134 0.866 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.027 0.973 44 H 0.094 0.906 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 -14.506 11.818 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 H 0.042 0.958 4 C -0.171 4.171 5 C -0.156 4.156 6 C 0.010 3.990 7 H 0.094 0.906 8 N -0.327 5.327 9 C 0.372 3.628 10 O -0.421 6.421 11 C -0.107 4.107 12 C -0.372 4.372 13 S 0.445 5.555 14 C -0.224 4.224 15 C -0.104 4.104 16 C -0.208 4.208 17 C -0.198 4.198 18 N -0.149 5.149 19 C 0.036 3.964 20 N -0.305 5.305 21 C -0.376 4.376 22 H 0.084 0.916 23 C -0.193 4.193 24 N -0.544 5.544 25 Si 0.725 3.275 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.214 1.214 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.241 0.759 37 H 0.206 0.794 38 H 0.152 0.848 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.044 0.956 44 H 0.113 0.887 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.070 -14.923 11.205 18.776 hybrid contribution -0.412 0.447 -0.683 0.914 sum -2.483 -14.476 10.522 18.067 Atomic orbital electron populations 1.21788 0.96147 1.01250 1.00093 1.20448 0.92873 0.93565 0.87128 0.95788 1.22080 0.95123 1.00858 0.99057 1.21682 0.97108 1.00064 0.96717 1.21861 0.96997 0.81654 0.98499 0.90552 1.45676 1.29158 1.07917 1.49987 1.16930 0.83669 0.82349 0.79858 1.90786 1.25061 1.84356 1.41897 1.20615 0.93628 0.96625 0.99816 1.26568 1.07312 0.96264 1.07090 1.82526 1.17267 1.12413 1.43251 1.26140 1.01417 0.92195 1.02603 1.20374 0.92361 0.96078 1.01543 1.23143 1.03316 0.91311 1.03077 1.23158 0.96220 1.02011 0.98455 1.66806 1.11042 1.17772 1.19276 1.21158 0.83861 0.97025 0.94307 1.44002 1.02603 1.64769 1.19091 1.19014 0.95023 1.37586 0.85991 0.91646 1.25033 0.97788 0.99494 0.96937 1.69979 1.23996 1.43658 1.16742 0.86492 0.79631 0.80359 0.81034 1.20946 1.21669 1.21352 0.94448 0.92090 0.92940 0.92864 0.92502 0.91031 0.93027 0.75905 0.79400 0.84791 0.88401 0.87266 0.87360 0.88144 0.95552 0.88745 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.95 37.16 0.30 -2.26 16 2 C 0.17 3.41 3.49 -67.60 -0.24 3.17 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.24 5.21 -26.61 -0.14 -2.38 16 5 C -0.12 -1.97 5.59 -26.69 -0.15 -2.12 16 6 C 0.12 2.34 2.81 -67.81 -0.19 2.14 16 7 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 8 N -0.68 -13.58 4.91 -54.81 -0.27 -13.85 16 9 C 0.59 12.44 7.76 -12.59 -0.10 12.34 16 10 O -0.54 -12.83 16.37 5.25 0.09 -12.75 16 11 C 0.03 0.51 6.70 -84.52 -0.57 -0.06 16 12 C -0.23 -3.54 10.62 29.66 0.31 -3.23 16 13 S 0.19 2.16 21.65 -107.50 -2.33 -0.17 16 14 C 0.06 0.74 6.99 -13.61 -0.10 0.65 16 15 C -0.08 -0.82 6.33 -91.77 -0.58 -1.40 16 16 C -0.17 -1.19 10.01 -26.73 -0.27 -1.46 16 17 C -0.16 -1.33 10.23 -26.73 -0.27 -1.60 16 18 N -0.43 -7.27 10.12 -8.51 -0.09 -7.36 16 19 C 0.16 4.02 4.88 -3.71 -0.02 4.00 16 20 N -0.58 -14.32 2.90 -164.77 -0.48 -14.80 16 21 C -0.25 -6.73 8.58 -15.06 -0.13 -6.85 16 22 H 0.07 1.76 6.25 -52.49 -0.33 1.43 16 23 C 0.01 0.18 4.94 -17.43 -0.09 0.09 16 24 N -0.90 -26.99 11.23 55.49 0.62 -26.37 16 25 Si 0.89 22.72 29.58 -169.99 -5.03 17.69 16 26 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 31 H 0.05 1.01 7.42 -51.93 -0.39 0.62 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.99 6.40 -51.93 -0.33 0.66 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.40 7.76 6.29 -40.82 -0.26 7.50 16 37 H 0.19 2.70 8.03 -52.49 -0.42 2.28 16 38 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.10 0.64 7.21 -51.93 -0.37 0.27 16 40 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 2.74 6.15 -51.93 -0.32 2.42 16 45 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -32.83 372.91 -10.65 -43.48 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.57 Total: 7.45 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -2.22 Total: 1.05 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.21 Total: -62.38 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.69 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.33 Total: -0.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.83 -10.65 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072112751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.480 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds