Wall clock time and date at job start Tue Mar 31 2020 19:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.59085 * 2 1 4 4 C 1.53193 * 109.58433 * 120.28086 * 2 1 3 5 5 C 1.53041 * 109.31300 * 174.56357 * 4 2 1 6 6 C 1.53044 * 109.53884 * 298.63377 * 5 4 2 7 7 H 1.08998 * 109.49761 * 181.31591 * 6 5 4 8 8 N 1.46497 * 109.49704 * 301.41588 * 6 5 4 9 9 C 1.34771 * 119.99896 * 204.99787 * 8 6 5 10 10 O 1.21632 * 119.99994 * 0.02562 * 9 8 6 11 11 C 1.47268 * 120.00124 * 179.97438 * 9 8 6 12 12 C 1.35214 * 123.14154 * 179.70826 * 11 9 8 13 13 S 1.70939 * 108.82370 * 179.87608 * 12 11 9 14 14 C 1.70772 * 91.13297 * 0.32626 * 13 12 11 15 15 C 1.50695 * 124.72047 * 179.77114 * 14 13 12 16 16 C 1.53000 * 117.49980 * 8.66482 * 15 14 13 17 17 C 1.52999 * 60.00061 * 252.51200 * 16 15 14 18 18 N 1.28645 * 110.55748 * 359.80916 * 14 13 12 19 19 C 1.53191 * 109.30755 * 61.36274 * 6 5 4 20 20 N 1.46917 * 109.70402 * 239.63746 * 2 1 3 21 21 C 1.36945 * 120.63269 * 6.51524 * 20 2 1 22 22 H 1.07999 * 119.99653 * 330.19743 * 21 20 2 23 23 C 1.38810 * 120.00178 * 150.19385 * 21 20 2 24 24 N 1.31620 * 119.99942 * 344.48884 * 23 21 20 25 25 Si 1.86795 * 119.99872 * 164.48482 * 23 21 20 26 26 H 1.48497 * 109.47152 * 60.00445 * 25 23 21 27 27 H 1.48507 * 109.47028 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47373 * 300.00024 * 25 23 21 29 29 H 1.09000 * 109.47021 * 300.00230 * 1 2 3 30 30 H 1.08996 * 109.46860 * 60.00275 * 1 2 3 31 31 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.50293 * 294.51312 * 4 2 1 33 33 H 1.08997 * 109.49933 * 54.61186 * 4 2 1 34 34 H 1.09001 * 109.45644 * 58.65504 * 5 4 2 35 35 H 1.09001 * 109.46009 * 178.61472 * 5 4 2 36 36 H 0.96997 * 120.00285 * 24.99505 * 8 6 5 37 37 H 1.07993 * 125.58376 * 0.02562 * 12 11 9 38 38 H 1.09000 * 115.55000 * 154.37578 * 15 14 13 39 39 H 1.08997 * 117.49788 * 359.97438 * 16 15 14 40 40 H 1.08998 * 117.49600 * 145.02281 * 16 15 14 41 41 H 1.09000 * 117.49973 * 252.51280 * 17 16 15 42 42 H 1.08998 * 117.50006 * 107.48822 * 17 16 15 43 43 H 1.09006 * 109.58889 * 65.15964 * 19 6 5 44 44 H 1.09004 * 109.58178 * 185.43292 * 19 6 5 45 45 H 0.97005 * 119.99905 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5678 -0.8434 1.1730 6 6 3.9604 -1.6610 -0.0597 7 1 5.0449 -1.7627 -0.0986 8 7 3.3465 -2.9888 0.0184 9 6 3.9059 -4.0290 -0.6308 10 8 4.9206 -3.8654 -1.2811 11 6 3.2891 -5.3640 -0.5518 12 6 3.7927 -6.4494 -1.1815 13 16 2.7974 -7.7965 -0.8399 14 6 1.7616 -6.8318 0.1155 15 6 0.5318 -7.3360 0.8256 16 6 0.2993 -8.8481 0.8485 17 6 -0.5756 -7.9528 -0.0312 18 7 2.1769 -5.6145 0.1440 19 6 3.4685 -0.9437 -1.3209 20 7 2.0254 -0.6991 -1.1934 21 6 1.1585 -1.1154 -2.1684 22 1 0.1447 -1.3842 -1.9107 23 6 1.5827 -1.1917 -3.4879 24 7 2.6925 -0.5888 -3.8583 25 14 0.5784 -2.1500 -4.7379 26 1 -0.7832 -1.5650 -4.8321 27 1 1.2412 -2.0786 -6.0649 28 1 0.4792 -3.5686 -4.3104 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7639 -0.1654 2.1372 33 1 1.6049 -1.7245 1.2923 34 1 4.0045 0.1528 1.1022 35 1 3.9380 -1.3391 2.0704 36 1 2.5375 -3.1194 0.5374 37 1 4.6798 -6.4634 -1.7973 38 1 0.2299 -6.7667 1.7047 39 1 1.0357 -9.4781 0.3496 40 1 -0.1555 -9.2738 1.7429 41 1 -1.6061 -7.7896 0.2845 42 1 -0.4146 -7.9939 -1.1084 43 1 3.9921 0.0062 -1.4287 44 1 3.6599 -1.5675 -2.1940 45 1 2.9888 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072112751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:24 Heat of formation + Delta-G solvation = 32.568587 kcal Electronic energy + Delta-G solvation = -27652.316026 eV Core-core repulsion = 23990.027443 eV Total energy + Delta-G solvation = -3662.288583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64360 -40.33948 -39.05868 -37.93647 -35.83424 -34.53504 -32.37043 -31.79205 -31.44366 -28.05627 -27.24588 -26.59088 -24.82477 -23.89516 -23.31510 -22.18198 -21.91264 -21.03012 -20.41600 -19.59790 -18.23292 -17.75046 -17.21120 -17.03197 -16.68105 -16.25163 -15.87157 -15.75013 -15.41797 -15.14228 -15.09068 -14.71744 -14.55526 -14.38772 -14.06699 -13.70063 -13.29795 -13.07134 -13.01101 -12.89911 -12.64906 -12.60712 -12.45190 -12.39893 -12.16334 -12.12533 -11.88496 -11.60722 -11.51319 -11.30094 -11.16782 -11.07659 -10.87724 -10.60187 -10.54452 -10.09168 -9.73784 -8.58167 -7.84352 -5.29155 -0.56882 0.17694 0.51332 0.88519 1.34952 1.38665 1.43660 2.19165 2.39279 2.47294 2.74743 3.01161 3.30862 3.61092 3.67118 3.82033 3.96841 4.02362 4.06926 4.07878 4.13620 4.16525 4.40297 4.45912 4.60388 4.68469 4.75387 4.75794 4.79179 4.93221 5.00042 5.02009 5.05940 5.07712 5.09276 5.20546 5.23362 5.29562 5.54009 5.58531 5.63478 5.70305 5.70986 6.32379 6.42454 6.67160 7.16693 7.21464 7.90970 8.41957 9.20873 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.004500 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.351913 B = 6220.980692 C = 6709.115334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 H 0.019 0.981 4 C -0.120 4.120 5 C -0.109 4.109 6 C 0.123 3.877 7 H 0.069 0.931 8 N -0.673 5.673 9 C 0.580 3.420 10 O -0.583 6.583 11 C -0.005 4.005 12 C -0.251 4.251 13 S 0.289 5.711 14 C 0.046 3.954 15 C -0.109 4.109 16 C -0.144 4.144 17 C -0.161 4.161 18 N -0.465 5.465 19 C 0.174 3.826 20 N -0.594 5.594 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.053 4.053 24 N -0.935 5.935 25 Si 0.948 3.052 26 H -0.268 1.268 27 H -0.298 1.298 28 H -0.290 1.290 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.410 0.590 37 H 0.189 0.811 38 H 0.137 0.863 39 H 0.105 0.895 40 H 0.135 0.865 41 H 0.123 0.877 42 H 0.092 0.908 43 H 0.003 0.997 44 H 0.044 0.956 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 -16.811 14.480 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.036 0.964 4 C -0.159 4.159 5 C -0.147 4.147 6 C 0.017 3.983 7 H 0.087 0.913 8 N -0.322 5.322 9 C 0.364 3.636 10 O -0.464 6.464 11 C -0.140 4.140 12 C -0.394 4.394 13 S 0.548 5.452 14 C -0.233 4.233 15 C -0.130 4.130 16 C -0.182 4.182 17 C -0.200 4.200 18 N -0.181 5.181 19 C 0.047 3.953 20 N -0.318 5.318 21 C -0.367 4.367 22 H 0.088 0.912 23 C -0.248 4.248 24 N -0.582 5.582 25 Si 0.777 3.223 26 H -0.193 1.193 27 H -0.225 1.225 28 H -0.217 1.217 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.247 0.753 37 H 0.206 0.794 38 H 0.155 0.845 39 H 0.123 0.877 40 H 0.153 0.847 41 H 0.142 0.858 42 H 0.111 0.889 43 H 0.021 0.979 44 H 0.063 0.937 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.249 -17.242 13.916 22.561 hybrid contribution 0.204 1.073 -1.470 1.831 sum -4.045 -16.169 12.446 20.801 Atomic orbital electron populations 1.21708 0.94745 1.01091 1.00906 1.20761 0.94153 0.93289 0.86811 0.96356 1.21963 0.94780 1.00765 0.98395 1.21665 0.97290 1.00029 0.95733 1.21646 0.96508 0.82041 0.98150 0.91278 1.45629 1.29205 1.07580 1.49745 1.17493 0.83318 0.83809 0.78970 1.90741 1.26855 1.85328 1.43509 1.20304 0.95392 0.95775 1.02560 1.26871 1.08104 0.97890 1.06516 1.82071 1.13979 1.08585 1.40552 1.26836 1.02326 0.91889 1.02243 1.20564 0.91890 0.98453 1.02133 1.23308 1.02252 0.89156 1.03478 1.23277 0.96714 1.01935 0.98080 1.66779 1.11050 1.19794 1.20455 1.20821 0.84312 0.95376 0.94814 1.44211 1.02148 1.65475 1.19953 1.19310 0.95315 1.35609 0.86430 0.91198 1.25712 0.99042 1.01184 0.98880 1.70149 1.25879 1.45868 1.16265 0.85619 0.79001 0.78924 0.78712 1.19319 1.22476 1.21681 0.90408 0.94515 0.93494 0.88895 0.92674 0.90188 0.89873 0.75279 0.79402 0.84517 0.87714 0.84710 0.85833 0.88943 0.97914 0.93721 0.94782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 7.95 71.98 0.57 -3.99 16 2 C 0.16 6.18 3.49 44.98 0.16 6.34 16 3 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.12 -3.74 5.21 30.67 0.16 -3.58 16 5 C -0.11 -3.45 5.59 30.62 0.17 -3.28 16 6 C 0.12 5.07 2.81 45.07 0.13 5.19 16 7 H 0.07 2.94 7.58 -2.39 -0.02 2.92 16 8 N -0.67 -27.59 4.91 -445.58 -2.19 -29.78 16 9 C 0.58 25.60 7.76 86.62 0.67 26.27 16 10 O -0.58 -29.36 16.37 -4.13 -0.07 -29.43 16 11 C -0.01 -0.20 6.70 40.56 0.27 0.07 16 12 C -0.25 -7.74 10.62 67.12 0.71 -7.03 16 13 S 0.29 6.00 21.65 -56.49 -1.22 4.77 16 14 C 0.05 1.15 6.99 88.57 0.62 1.77 16 15 C -0.11 -1.89 6.33 -11.54 -0.07 -1.96 16 16 C -0.14 -1.44 10.01 30.59 0.31 -1.13 16 17 C -0.16 -2.19 10.23 30.59 0.31 -1.87 16 18 N -0.47 -15.47 10.12 -180.83 -1.83 -17.30 16 19 C 0.17 9.01 4.88 86.36 0.42 9.43 16 20 N -0.59 -29.91 2.90 -675.22 -1.96 -31.87 16 21 C -0.24 -13.17 8.58 84.03 0.72 -12.45 16 22 H 0.07 3.79 6.25 -2.91 -0.02 3.77 16 23 C -0.05 -3.15 4.94 84.86 0.42 -2.73 16 24 N -0.93 -59.15 11.23 21.65 0.24 -58.91 16 25 Si 0.95 48.11 29.58 68.60 2.03 50.14 16 26 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 27 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 28 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 29 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.04 1.47 7.66 -2.39 -0.02 1.45 16 31 H 0.05 1.72 7.42 -2.39 -0.02 1.70 16 32 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 1.77 6.40 -2.39 -0.02 1.75 16 34 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.41 15.73 6.29 -92.71 -0.58 15.15 16 37 H 0.19 5.59 8.03 -2.91 -0.02 5.56 16 38 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.10 0.91 7.21 -2.39 -0.02 0.89 16 40 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 43 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 44 H 0.04 2.77 6.15 -2.38 -0.01 2.75 16 45 H 0.24 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -77.15 372.91 1.00 -76.14 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.43 Total: 25.18 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 5.57 Total: 11.03 kcal Atomic # 7 Polarization: -132.11 SS G_CDS: -5.74 Total: -137.85 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.07 Total: -29.43 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Atomic # 16 Polarization: 6.00 SS G_CDS: -1.22 Total: 4.77 kcal Total: -77.15 1.00 -76.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072112751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.713 kcal (2) G-P(sol) polarization free energy of solvation -77.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds