Wall clock time and date at job start Tue Mar 31 2020 19:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.58278 * 2 1 4 4 C 1.53190 * 109.58753 * 120.42723 * 2 1 3 5 5 C 1.53034 * 109.31105 * 174.42545 * 4 2 1 6 6 C 1.53045 * 109.53817 * 298.62962 * 5 4 2 7 7 H 1.08994 * 109.50231 * 301.42096 * 6 5 4 8 8 N 1.46495 * 109.52728 * 181.33253 * 6 5 4 9 9 C 1.34772 * 120.00117 * 155.14707 * 8 6 5 10 10 O 1.21636 * 119.99791 * 0.02562 * 9 8 6 11 11 C 1.47269 * 120.00068 * 180.02562 * 9 8 6 12 12 C 1.35209 * 123.14127 * 180.02562 * 11 9 8 13 13 S 1.70934 * 108.82834 * 179.97438 * 12 11 9 14 14 C 1.70772 * 91.12932 * 0.02562 * 13 12 11 15 15 C 1.50694 * 124.71961 * 180.02562 * 14 13 12 16 16 C 1.52999 * 117.50080 * 8.72352 * 15 14 13 17 17 C 1.53000 * 117.49999 * 300.06031 * 15 14 13 18 18 N 1.28642 * 110.55716 * 359.76303 * 14 13 12 19 19 C 1.53201 * 109.30799 * 61.36868 * 6 5 4 20 20 N 1.46920 * 109.58551 * 239.71870 * 2 1 3 21 21 C 1.36936 * 120.63115 * 6.62075 * 20 2 1 22 22 H 1.08004 * 120.00194 * 330.16138 * 21 20 2 23 23 C 1.38822 * 119.99855 * 150.15781 * 21 20 2 24 24 N 1.31620 * 119.99894 * 344.49212 * 23 21 20 25 25 Si 1.86801 * 119.99668 * 164.49152 * 23 21 20 26 26 H 1.48506 * 109.46773 * 90.00394 * 25 23 21 27 27 H 1.48501 * 109.46790 * 210.00013 * 25 23 21 28 28 H 1.48498 * 109.47308 * 330.00413 * 25 23 21 29 29 H 1.09000 * 109.47123 * 180.28580 * 1 2 3 30 30 H 1.09007 * 109.47196 * 300.28328 * 1 2 3 31 31 H 1.08998 * 109.47588 * 60.28210 * 1 2 3 32 32 H 1.09004 * 109.49524 * 294.37550 * 4 2 1 33 33 H 1.09000 * 109.49817 * 54.46895 * 4 2 1 34 34 H 1.09006 * 109.45844 * 178.61587 * 5 4 2 35 35 H 1.08998 * 109.46826 * 58.65429 * 5 4 2 36 36 H 0.97003 * 120.00175 * 335.15653 * 8 6 5 37 37 H 1.08004 * 125.58401 * 359.93219 * 12 11 9 38 38 H 1.09005 * 115.55149 * 154.38812 * 15 14 13 39 39 H 1.08999 * 117.49813 * 359.97438 * 16 15 14 40 40 H 1.08998 * 117.49983 * 145.02525 * 16 15 14 41 41 H 1.09004 * 117.49971 * 214.97743 * 17 15 14 42 42 H 1.08999 * 117.49932 * 359.97438 * 17 15 14 43 43 H 1.09003 * 109.58526 * 185.58007 * 19 6 5 44 44 H 1.08993 * 109.58627 * 65.15231 * 19 6 5 45 45 H 0.96997 * 119.99522 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5675 -0.8493 1.1690 6 6 3.9569 -1.6656 -0.0656 7 1 3.4984 -2.6527 -0.0087 8 7 5.4141 -1.8058 -0.1203 9 6 5.9670 -2.8463 -0.7744 10 8 5.2560 -3.6688 -1.3198 11 6 7.4319 -2.9875 -0.8289 12 6 8.0532 -4.0048 -1.4670 13 16 9.7433 -3.8100 -1.3008 14 6 9.5232 -2.3830 -0.3890 15 6 10.6406 -1.5446 0.1762 16 6 12.0682 -1.8870 -0.2547 17 6 11.5970 -2.2156 1.1642 18 7 8.2709 -2.1203 -0.2564 19 6 3.4650 -0.9452 -1.3250 20 7 2.0225 -0.6980 -1.1953 21 6 1.1537 -1.1100 -2.1703 22 1 0.1396 -1.3773 -1.9121 23 6 1.5763 -1.1839 -3.4905 24 7 2.6871 -0.5825 -3.8606 25 14 0.5686 -2.1369 -4.7418 26 1 -0.4251 -1.2302 -5.3710 27 1 1.4688 -2.6865 -5.7872 28 1 -0.1391 -3.2515 -4.0620 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3634 0.5183 0.8875 31 1 -0.3634 0.5094 -0.8925 32 1 1.7660 -0.1694 2.1366 33 1 1.6030 -1.7269 1.2892 34 1 3.9378 -1.3473 2.0652 35 1 4.0062 0.1461 1.0994 36 1 5.9812 -1.1497 0.3145 37 1 7.5621 -4.8091 -1.9946 38 1 10.4030 -0.4936 0.3406 39 1 12.1991 -2.7189 -0.9467 40 1 12.7698 -1.0613 -0.3733 41 1 11.9888 -1.6059 1.9784 42 1 11.4177 -3.2632 1.4057 43 1 3.6517 -1.5689 -2.1992 44 1 3.9902 0.0039 -1.4317 45 1 2.9826 -0.6346 -4.7830 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072112752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:28 Heat of formation + Delta-G solvation = 51.852504 kcal Electronic energy + Delta-G solvation = -26672.357289 eV Core-core repulsion = 23010.904919 eV Total energy + Delta-G solvation = -3661.452370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.43313 -38.89740 -37.67467 -37.11368 -34.36363 -32.75731 -30.89552 -30.37160 -29.78288 -26.62135 -25.69917 -24.94163 -23.46509 -22.87937 -22.18350 -21.04679 -20.37633 -19.72717 -19.18735 -18.34364 -16.62358 -16.39957 -16.26973 -15.44831 -15.17630 -15.13931 -14.64291 -14.09423 -13.89668 -13.72815 -13.68951 -13.35076 -13.27521 -12.68501 -12.62015 -12.36458 -12.19219 -11.93428 -11.74071 -11.42130 -11.22305 -11.06827 -10.98869 -10.85637 -10.65541 -10.47518 -10.35888 -10.21624 -9.99954 -9.93938 -9.80812 -9.70836 -9.44865 -9.39792 -8.92547 -8.44630 -8.36555 -6.54941 -5.69041 -3.13690 0.42795 1.06116 1.48028 1.99030 3.33123 3.44440 3.52101 3.53035 3.54683 3.66091 3.78985 4.34012 4.48880 4.57538 4.64201 4.89951 5.16615 5.17785 5.27189 5.39561 5.40701 5.42725 5.53881 5.59105 5.61766 5.62938 5.73746 5.86537 6.02290 6.17423 6.32481 6.35859 6.44246 6.50054 6.55599 6.68196 6.80183 6.98730 7.09528 7.17705 7.31595 7.40850 7.79220 7.90658 8.01769 8.55103 8.63743 9.29575 9.94119 10.50074 11.39088 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.003066 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.275379 B = 9131.359112 C =10311.882789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.083 0.917 8 N -0.700 5.700 9 C 0.587 3.413 10 O -0.527 6.527 11 C 0.023 3.977 12 C -0.228 4.228 13 S 0.197 5.803 14 C 0.054 3.946 15 C -0.083 4.083 16 C -0.170 4.170 17 C -0.160 4.160 18 N -0.439 5.439 19 C 0.169 3.831 20 N -0.583 5.583 21 C -0.253 4.253 22 H 0.070 0.930 23 C 0.006 3.994 24 N -0.900 5.900 25 Si 0.900 3.100 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.279 1.279 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.401 0.599 37 H 0.190 0.810 38 H 0.135 0.865 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.018 0.982 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.756 -2.939 10.816 21.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.010 3.990 7 H 0.101 0.899 8 N -0.349 5.349 9 C 0.369 3.631 10 O -0.403 6.403 11 C -0.112 4.112 12 C -0.370 4.370 13 S 0.454 5.546 14 C -0.225 4.225 15 C -0.105 4.105 16 C -0.208 4.208 17 C -0.199 4.199 18 N -0.154 5.154 19 C 0.042 3.958 20 N -0.306 5.306 21 C -0.382 4.382 22 H 0.087 0.913 23 C -0.193 4.193 24 N -0.544 5.544 25 Si 0.730 3.270 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.204 1.204 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.236 0.764 37 H 0.208 0.792 38 H 0.153 0.847 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.036 0.964 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 18.907 -3.593 10.194 21.778 hybrid contribution -1.146 -0.013 -0.567 1.278 sum 17.761 -3.606 9.626 20.521 Atomic orbital electron populations 1.21802 0.96005 1.01358 1.00197 1.20496 0.93059 0.93582 0.87071 0.95734 1.22041 0.94253 1.01309 0.98910 1.21672 0.97367 0.99728 0.96634 1.22056 0.77445 1.00993 0.98474 0.89922 1.45893 1.08653 1.26303 1.54065 1.16997 0.84424 0.82238 0.79399 1.90859 1.61343 1.42731 1.45381 1.20621 0.95979 0.93159 1.01457 1.26624 0.98362 1.05389 1.06605 1.82605 1.02928 1.21941 1.47146 1.26148 0.94659 0.99085 1.02592 1.20395 0.86486 0.99177 1.04397 1.23169 0.95300 1.04090 0.98216 1.23164 1.01364 1.02060 0.93334 1.66804 1.01085 1.27721 1.19746 1.21060 0.83585 0.96894 0.94211 1.44016 1.02591 1.64854 1.19187 1.19117 0.95034 1.38124 0.85942 0.91270 1.25096 0.97786 0.99337 0.97075 1.70012 1.24037 1.43659 1.16643 0.86340 0.79323 0.80036 0.81331 1.21496 1.21623 1.20412 0.92818 0.94367 0.91984 0.92653 0.92062 0.93043 0.92191 0.76428 0.79242 0.84712 0.88311 0.87150 0.87403 0.88222 0.88930 0.96420 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 7.95 37.16 0.30 -2.32 16 2 C 0.16 3.47 3.50 -67.60 -0.24 3.24 16 3 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 4 C -0.13 -2.22 5.37 -26.62 -0.14 -2.36 16 5 C -0.12 -2.00 5.36 -26.69 -0.14 -2.14 16 6 C 0.12 2.39 2.60 -67.81 -0.18 2.21 16 7 H 0.08 1.91 7.58 -51.93 -0.39 1.51 16 8 N -0.70 -13.05 5.08 -54.81 -0.28 -13.32 16 9 C 0.59 11.63 7.76 -12.59 -0.10 11.54 16 10 O -0.53 -12.35 16.38 5.25 0.09 -12.26 16 11 C 0.02 0.37 6.70 -84.53 -0.57 -0.20 16 12 C -0.23 -3.14 10.62 29.65 0.31 -2.82 16 13 S 0.20 1.93 21.65 -107.50 -2.33 -0.40 16 14 C 0.05 0.62 6.99 -13.62 -0.10 0.52 16 15 C -0.08 -0.68 6.33 -91.78 -0.58 -1.26 16 16 C -0.17 -0.96 10.01 -26.69 -0.27 -1.22 16 17 C -0.16 -0.95 10.24 -26.69 -0.27 -1.22 16 18 N -0.44 -6.39 10.12 -8.51 -0.09 -6.47 16 19 C 0.17 4.28 4.86 -3.71 -0.02 4.26 16 20 N -0.58 -14.94 2.99 -164.77 -0.49 -15.43 16 21 C -0.25 -7.07 8.57 -15.06 -0.13 -7.20 16 22 H 0.07 1.88 6.24 -52.48 -0.33 1.55 16 23 C 0.01 0.17 4.94 -17.43 -0.09 0.09 16 24 N -0.90 -27.30 11.23 55.49 0.62 -26.68 16 25 Si 0.90 22.79 29.58 -169.99 -5.03 17.76 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 29 H 0.05 1.05 7.44 -51.93 -0.39 0.66 16 30 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.06 1.28 7.63 -51.93 -0.40 0.89 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.40 6.58 8.12 -40.82 -0.33 6.25 16 37 H 0.19 2.49 8.03 -52.48 -0.42 2.06 16 38 H 0.14 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.10 0.53 7.21 -51.93 -0.37 0.15 16 40 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 2.74 6.15 -51.93 -0.32 2.42 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 376.41 15.07 5.67 5.67 Total: -1.00 -33.70 376.41 -10.77 -44.47 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.74 Total: 5.55 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -2.20 Total: 1.12 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.23 Total: -61.91 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.03 Total: 17.76 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.33 Total: -0.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.70 -10.77 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072112752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.319 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds