Wall clock time and date at job start Tue Mar 31 2020 19:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.58278 * 2 1 4 4 C 1.53190 * 109.58753 * 120.42723 * 2 1 3 5 5 C 1.53034 * 109.31105 * 174.42545 * 4 2 1 6 6 C 1.53045 * 109.53817 * 298.62962 * 5 4 2 7 7 H 1.08994 * 109.50231 * 301.42096 * 6 5 4 8 8 N 1.46495 * 109.52728 * 181.33253 * 6 5 4 9 9 C 1.34772 * 120.00117 * 155.14707 * 8 6 5 10 10 O 1.21636 * 119.99791 * 0.02562 * 9 8 6 11 11 C 1.47269 * 120.00068 * 180.02562 * 9 8 6 12 12 C 1.35209 * 123.14127 * 180.02562 * 11 9 8 13 13 S 1.70934 * 108.82834 * 179.97438 * 12 11 9 14 14 C 1.70772 * 91.12932 * 0.02562 * 13 12 11 15 15 C 1.50694 * 124.71961 * 180.02562 * 14 13 12 16 16 C 1.52999 * 117.50080 * 8.72352 * 15 14 13 17 17 C 1.53000 * 117.49999 * 300.06031 * 15 14 13 18 18 N 1.28642 * 110.55716 * 359.76303 * 14 13 12 19 19 C 1.53201 * 109.30799 * 61.36868 * 6 5 4 20 20 N 1.46920 * 109.58551 * 239.71870 * 2 1 3 21 21 C 1.36936 * 120.63115 * 6.62075 * 20 2 1 22 22 H 1.08004 * 120.00194 * 330.16138 * 21 20 2 23 23 C 1.38822 * 119.99855 * 150.15781 * 21 20 2 24 24 N 1.31620 * 119.99894 * 344.49212 * 23 21 20 25 25 Si 1.86801 * 119.99668 * 164.49152 * 23 21 20 26 26 H 1.48506 * 109.46773 * 90.00394 * 25 23 21 27 27 H 1.48501 * 109.46790 * 210.00013 * 25 23 21 28 28 H 1.48498 * 109.47308 * 330.00413 * 25 23 21 29 29 H 1.09000 * 109.47123 * 180.28580 * 1 2 3 30 30 H 1.09007 * 109.47196 * 300.28328 * 1 2 3 31 31 H 1.08998 * 109.47588 * 60.28210 * 1 2 3 32 32 H 1.09004 * 109.49524 * 294.37550 * 4 2 1 33 33 H 1.09000 * 109.49817 * 54.46895 * 4 2 1 34 34 H 1.09006 * 109.45844 * 178.61587 * 5 4 2 35 35 H 1.08998 * 109.46826 * 58.65429 * 5 4 2 36 36 H 0.97003 * 120.00175 * 335.15653 * 8 6 5 37 37 H 1.08004 * 125.58401 * 359.93219 * 12 11 9 38 38 H 1.09005 * 115.55149 * 154.38812 * 15 14 13 39 39 H 1.08999 * 117.49813 * 359.97438 * 16 15 14 40 40 H 1.08998 * 117.49983 * 145.02525 * 16 15 14 41 41 H 1.09004 * 117.49971 * 214.97743 * 17 15 14 42 42 H 1.08999 * 117.49932 * 359.97438 * 17 15 14 43 43 H 1.09003 * 109.58526 * 185.58007 * 19 6 5 44 44 H 1.08993 * 109.58627 * 65.15231 * 19 6 5 45 45 H 0.96997 * 119.99522 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5675 -0.8493 1.1690 6 6 3.9569 -1.6656 -0.0656 7 1 3.4984 -2.6527 -0.0087 8 7 5.4141 -1.8058 -0.1203 9 6 5.9670 -2.8463 -0.7744 10 8 5.2560 -3.6688 -1.3198 11 6 7.4319 -2.9875 -0.8289 12 6 8.0532 -4.0048 -1.4670 13 16 9.7433 -3.8100 -1.3008 14 6 9.5232 -2.3830 -0.3890 15 6 10.6406 -1.5446 0.1762 16 6 12.0682 -1.8870 -0.2547 17 6 11.5970 -2.2156 1.1642 18 7 8.2709 -2.1203 -0.2564 19 6 3.4650 -0.9452 -1.3250 20 7 2.0225 -0.6980 -1.1953 21 6 1.1537 -1.1100 -2.1703 22 1 0.1396 -1.3773 -1.9121 23 6 1.5763 -1.1839 -3.4905 24 7 2.6871 -0.5825 -3.8606 25 14 0.5686 -2.1369 -4.7418 26 1 -0.4251 -1.2302 -5.3710 27 1 1.4688 -2.6865 -5.7872 28 1 -0.1391 -3.2515 -4.0620 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3634 0.5183 0.8875 31 1 -0.3634 0.5094 -0.8925 32 1 1.7660 -0.1694 2.1366 33 1 1.6030 -1.7269 1.2892 34 1 3.9378 -1.3473 2.0652 35 1 4.0062 0.1461 1.0994 36 1 5.9812 -1.1497 0.3145 37 1 7.5621 -4.8091 -1.9946 38 1 10.4030 -0.4936 0.3406 39 1 12.1991 -2.7189 -0.9467 40 1 12.7698 -1.0613 -0.3733 41 1 11.9888 -1.6059 1.9784 42 1 11.4177 -3.2632 1.4057 43 1 3.6517 -1.5689 -2.1992 44 1 3.9902 0.0039 -1.4317 45 1 2.9826 -0.6346 -4.7830 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072112752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:27 Heat of formation + Delta-G solvation = 29.141626 kcal Electronic energy + Delta-G solvation = -26673.342106 eV Core-core repulsion = 23010.904919 eV Total energy + Delta-G solvation = -3662.437187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67313 -40.28472 -39.14976 -37.94488 -36.08969 -34.68359 -32.40593 -31.81283 -31.46911 -28.06438 -27.29686 -26.48860 -24.72921 -23.93086 -23.30680 -22.20811 -21.78836 -21.22335 -20.70215 -19.50081 -18.36859 -17.81592 -17.25620 -17.11059 -16.65491 -16.46435 -15.88181 -15.58681 -15.40167 -15.21543 -15.11424 -14.89604 -14.56087 -14.44752 -14.16874 -13.55938 -13.30478 -13.10688 -13.05704 -12.80596 -12.71551 -12.56443 -12.38699 -12.32528 -12.16194 -12.03267 -11.89802 -11.71928 -11.54263 -11.45686 -11.20970 -11.11481 -10.91115 -10.61795 -10.56029 -10.21683 -9.78966 -8.64565 -7.87254 -5.34126 -0.59478 0.15320 0.49713 0.82388 1.38989 1.43298 1.51222 2.09167 2.25939 2.49017 2.72128 2.98312 3.29410 3.57957 3.69636 3.81849 3.90469 4.03151 4.05205 4.05879 4.11320 4.22706 4.35409 4.40459 4.55023 4.68235 4.69756 4.77451 4.78717 4.86396 4.98781 5.01988 5.03779 5.10035 5.15148 5.22329 5.25583 5.27728 5.39400 5.53584 5.58225 5.68482 5.74075 6.24664 6.39968 6.59449 7.10129 7.15873 7.86978 8.37696 9.18353 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.003066 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.275379 B = 9131.359112 C =10311.882789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.021 0.979 4 C -0.116 4.116 5 C -0.107 4.107 6 C 0.129 3.871 7 H 0.056 0.944 8 N -0.692 5.692 9 C 0.581 3.419 10 O -0.577 6.577 11 C -0.006 4.006 12 C -0.249 4.249 13 S 0.298 5.702 14 C 0.047 3.953 15 C -0.111 4.111 16 C -0.154 4.154 17 C -0.149 4.149 18 N -0.466 5.466 19 C 0.184 3.816 20 N -0.602 5.602 21 C -0.251 4.251 22 H 0.077 0.923 23 C -0.056 4.056 24 N -0.935 5.935 25 Si 0.959 3.041 26 H -0.277 1.277 27 H -0.300 1.300 28 H -0.271 1.271 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.414 0.586 37 H 0.188 0.812 38 H 0.134 0.866 39 H 0.104 0.896 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.101 0.899 43 H 0.041 0.959 44 H -0.006 1.006 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.625 -2.923 13.199 24.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.039 0.961 4 C -0.155 4.155 5 C -0.145 4.145 6 C 0.023 3.977 7 H 0.074 0.926 8 N -0.341 5.341 9 C 0.365 3.635 10 O -0.457 6.457 11 C -0.141 4.141 12 C -0.392 4.392 13 S 0.557 5.443 14 C -0.231 4.231 15 C -0.133 4.133 16 C -0.192 4.192 17 C -0.188 4.188 18 N -0.181 5.181 19 C 0.056 3.944 20 N -0.326 5.326 21 C -0.382 4.382 22 H 0.094 0.906 23 C -0.250 4.250 24 N -0.582 5.582 25 Si 0.788 3.212 26 H -0.204 1.204 27 H -0.227 1.227 28 H -0.196 1.196 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.250 0.750 37 H 0.205 0.795 38 H 0.152 0.848 39 H 0.122 0.878 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.119 0.881 43 H 0.059 0.941 44 H 0.012 0.988 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 20.792 -3.555 12.627 24.584 hybrid contribution -1.579 -0.007 -1.273 2.028 sum 19.213 -3.562 11.354 22.600 Atomic orbital electron populations 1.21729 0.94477 1.01243 1.01134 1.20830 0.94496 0.93332 0.86650 0.96140 1.21947 0.94053 1.01057 0.98466 1.21648 0.97460 0.99803 0.95616 1.21646 0.78460 0.99467 0.98092 0.92582 1.45770 1.07972 1.26499 1.53882 1.17586 0.86157 0.81531 0.78184 1.90810 1.63066 1.44431 1.47359 1.20179 0.94323 0.95270 1.04351 1.26897 1.01644 1.04715 1.05905 1.82172 0.98292 1.19430 1.44456 1.26821 0.94495 1.00026 1.01803 1.20560 0.86677 0.98976 1.07075 1.23331 0.93207 1.04657 0.98035 1.23303 0.99362 1.02171 0.93943 1.66771 1.02200 1.28106 1.21055 1.20696 0.84002 0.95018 0.94662 1.44313 1.02316 1.65749 1.20246 1.19487 0.95524 1.36634 0.86521 0.90579 1.25870 0.99126 1.00914 0.99140 1.70185 1.25955 1.45723 1.16314 0.85390 0.77918 0.79010 0.78923 1.20351 1.22671 1.19555 0.93424 0.90159 0.94271 0.88354 0.92662 0.89790 0.91117 0.74958 0.79518 0.84821 0.87798 0.85231 0.85692 0.88069 0.94084 0.98780 0.94701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 7.95 71.98 0.57 -4.18 16 2 C 0.15 6.31 3.50 44.98 0.16 6.46 16 3 H 0.02 0.88 8.14 -2.38 -0.02 0.87 16 4 C -0.12 -3.81 5.37 30.67 0.16 -3.65 16 5 C -0.11 -3.52 5.36 30.62 0.16 -3.35 16 6 C 0.13 5.53 2.60 45.07 0.12 5.65 16 7 H 0.06 2.71 7.58 -2.39 -0.02 2.69 16 8 N -0.69 -26.91 5.08 -445.57 -2.26 -29.17 16 9 C 0.58 24.48 7.76 86.62 0.67 25.15 16 10 O -0.58 -29.15 16.38 -4.15 -0.07 -29.22 16 11 C -0.01 -0.21 6.70 40.56 0.27 0.06 16 12 C -0.25 -6.96 10.62 67.12 0.71 -6.25 16 13 S 0.30 5.25 21.65 -56.49 -1.22 4.03 16 14 C 0.05 1.01 6.99 88.57 0.62 1.63 16 15 C -0.11 -1.57 6.33 -11.54 -0.07 -1.64 16 16 C -0.15 -1.20 10.01 30.62 0.31 -0.89 16 17 C -0.15 -1.27 10.24 30.62 0.31 -0.96 16 18 N -0.47 -13.61 10.12 -180.84 -1.83 -15.44 16 19 C 0.18 9.80 4.86 86.37 0.42 10.22 16 20 N -0.60 -31.82 2.99 -675.21 -2.02 -33.84 16 21 C -0.25 -14.51 8.57 84.04 0.72 -13.79 16 22 H 0.08 4.20 6.24 -2.91 -0.02 4.18 16 23 C -0.06 -3.35 4.94 84.86 0.42 -2.93 16 24 N -0.94 -60.05 11.23 21.65 0.24 -59.81 16 25 Si 0.96 48.66 29.58 68.60 2.03 50.68 16 26 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 28 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 29 H 0.05 1.80 7.44 -2.39 -0.02 1.78 16 30 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.04 1.60 7.63 -2.39 -0.02 1.58 16 32 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.41 13.87 8.12 -92.71 -0.75 13.11 16 37 H 0.19 5.16 8.03 -2.91 -0.02 5.14 16 38 H 0.13 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.10 0.70 7.21 -2.39 -0.02 0.68 16 40 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.04 2.61 6.15 -2.39 -0.01 2.59 16 44 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 45 H 0.24 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -80.15 376.41 0.69 -79.46 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.26 Total: 21.77 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 5.56 Total: 11.54 kcal Atomic # 7 Polarization: -132.40 SS G_CDS: -5.87 Total: -138.26 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.07 Total: -29.22 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 2.03 Total: 50.68 kcal Atomic # 16 Polarization: 5.25 SS G_CDS: -1.22 Total: 4.03 kcal Total: -80.15 0.69 -79.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072112752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.602 kcal (2) G-P(sol) polarization free energy of solvation -80.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds