Wall clock time and date at job start Tue Mar 31 2020 19:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.99104 * 2 1 4 4 C 1.54460 * 109.87891 * 121.08662 * 2 1 3 5 5 C 1.54393 * 103.03209 * 141.01412 * 4 2 1 6 6 C 1.54118 * 102.47728 * 325.26669 * 5 4 2 7 7 N 1.47555 * 110.02389 * 238.72034 * 2 1 3 8 8 C 1.34768 * 125.57472 * 61.62042 * 7 2 1 9 9 O 1.21631 * 120.00115 * 359.93521 * 8 7 2 10 10 C 1.47273 * 120.00202 * 179.97438 * 8 7 2 11 11 C 1.35204 * 123.14426 * 179.73414 * 10 8 7 12 12 S 1.70941 * 108.82857 * 179.87209 * 11 10 8 13 13 C 1.70767 * 91.12730 * 0.32863 * 12 11 10 14 14 N 1.28650 * 110.56350 * 359.80278 * 13 12 11 15 15 C 1.52102 * 110.50660 * 207.27055 * 5 4 2 16 16 C 1.53344 * 109.44332 * 295.90885 * 15 5 4 17 17 N 1.46925 * 108.69223 * 306.70872 * 16 15 5 18 18 C 1.36936 * 120.55116 * 234.36438 * 17 16 15 19 19 H 1.08006 * 120.00119 * 152.40157 * 18 17 16 20 20 C 1.38803 * 120.00049 * 332.40723 * 18 17 16 21 21 N 1.31624 * 120.00353 * 159.35881 * 20 18 17 22 22 Si 1.86806 * 119.99839 * 339.35809 * 20 18 17 23 23 H 1.48501 * 109.47123 * 93.27326 * 22 20 18 24 24 H 1.48501 * 109.46967 * 213.26781 * 22 20 18 25 25 H 1.48496 * 109.47048 * 333.26851 * 22 20 18 26 26 C 1.46937 * 118.89809 * 54.33308 * 17 16 15 27 27 C 1.52105 * 110.50932 * 83.24359 * 5 4 2 28 28 H 1.09002 * 109.46777 * 298.91540 * 1 2 3 29 29 H 1.08997 * 109.46962 * 58.91365 * 1 2 3 30 30 H 1.08995 * 109.46862 * 178.91841 * 1 2 3 31 31 H 1.08995 * 110.73251 * 22.58077 * 4 2 1 32 32 H 1.08999 * 110.73080 * 259.44797 * 4 2 1 33 33 H 1.09001 * 110.37930 * 154.91041 * 6 5 4 34 34 H 1.09004 * 110.37774 * 277.14477 * 6 5 4 35 35 H 1.07999 * 125.58480 * 0.02562 * 11 10 8 36 36 H 1.08003 * 124.72160 * 179.84344 * 13 12 11 37 37 H 1.09005 * 109.47917 * 55.90646 * 15 5 4 38 38 H 1.09000 * 109.47479 * 175.91786 * 15 5 4 39 39 H 1.08998 * 109.60374 * 186.94154 * 16 15 5 40 40 H 1.09003 * 109.59624 * 66.46646 * 16 15 5 41 41 H 0.97001 * 119.99911 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.60472 * 185.89073 * 26 17 16 43 43 H 1.09008 * 109.59660 * 65.41593 * 26 17 16 44 44 H 1.08997 * 109.47678 * 184.06910 * 27 5 4 45 45 H 1.08999 * 109.48145 * 304.09436 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0553 -0.7500 1.2440 5 6 3.2732 -1.5242 0.6953 6 6 2.8228 -1.8838 -0.7341 7 7 2.0353 -0.7198 -1.1848 8 6 1.8143 -0.3707 -2.4676 9 8 1.1465 0.6131 -2.7237 10 6 2.3805 -1.1809 -3.5594 11 6 2.1946 -0.8923 -4.8671 12 16 3.0100 -2.0610 -5.8113 13 6 3.5435 -2.8726 -4.4067 14 7 3.1209 -2.2726 -3.3501 15 6 3.5181 -2.7822 1.5144 16 6 3.8894 -2.3921 2.9502 17 7 5.0108 -1.4439 2.9055 18 6 6.1595 -1.6907 3.6089 19 1 7.1008 -1.2888 3.2640 20 6 6.1142 -2.4576 4.7649 21 7 7.2080 -3.0350 5.2151 22 14 4.5006 -2.6702 5.6820 23 1 3.8252 -3.9075 5.2151 24 1 4.7692 -2.7727 7.1390 25 1 3.6250 -1.4996 5.4212 26 6 4.8795 -0.2267 2.0930 27 6 4.5027 -0.6293 0.6621 28 1 -0.3633 0.4969 0.8996 29 1 -0.3633 0.5306 -0.8801 30 1 -0.3633 -1.0275 -0.0194 31 1 1.3013 -1.4378 1.6267 32 1 2.3620 -0.0463 2.0178 33 1 3.6889 -2.0290 -1.3797 34 1 2.2041 -2.7812 -0.7227 35 1 1.6264 -0.0584 -5.2521 36 1 4.1518 -3.7651 -4.4055 37 1 2.6137 -3.3906 1.5254 38 1 4.3341 -3.3520 1.0701 39 1 4.1847 -3.2819 3.5061 40 1 3.0330 -1.9230 3.4347 41 1 7.1763 -3.5706 6.0232 42 1 5.8276 0.3110 2.0840 43 1 4.0995 0.4097 2.5112 44 1 5.3327 -1.1688 0.2060 45 1 4.2857 0.2651 0.0782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086907374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:35 Heat of formation + Delta-G solvation = 45.863809 kcal Electronic energy + Delta-G solvation = -27863.250312 eV Core-core repulsion = 24201.538253 eV Total energy + Delta-G solvation = -3661.712059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.99480 -39.75407 -38.24299 -36.21552 -33.10604 -31.95058 -31.19071 -30.78006 -30.43817 -27.42216 -26.15347 -26.06011 -23.93793 -23.34937 -22.65245 -21.09637 -20.84745 -19.53192 -18.50935 -18.16273 -16.79603 -16.39317 -16.27946 -15.80965 -15.35074 -15.11547 -14.60295 -14.25765 -13.97514 -13.89075 -13.67738 -13.54702 -13.44547 -13.29771 -12.92856 -12.44735 -12.32633 -12.21572 -12.19383 -11.92705 -11.71964 -11.63973 -11.07487 -10.80983 -10.69509 -10.54153 -10.39852 -10.14139 -10.10780 -10.05943 -9.83778 -9.78489 -9.58083 -9.38059 -9.35480 -8.61982 -8.54277 -6.93298 -5.93300 -3.28444 0.22863 0.93422 1.28157 1.77243 2.96113 3.22873 3.32530 3.49347 3.52026 3.83455 4.51399 4.54365 4.67094 4.78609 4.89405 4.96344 4.99660 5.04218 5.22870 5.31559 5.35585 5.45613 5.50322 5.59280 5.67461 5.80019 5.90632 5.94730 6.01226 6.06594 6.08986 6.11146 6.24545 6.25380 6.39524 6.46252 6.51207 6.55298 6.68598 6.72876 6.74015 6.99857 7.10838 7.50691 7.99238 8.07179 8.34964 8.97027 9.74489 10.12793 11.22899 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018323 B = 0.003323 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.754633 B = 8424.352400 C = 9306.674977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 H 0.077 0.923 4 C -0.123 4.123 5 C -0.060 4.060 6 C 0.113 3.887 7 N -0.592 5.592 8 C 0.604 3.396 9 O -0.543 6.543 10 C 0.013 3.987 11 C -0.225 4.225 12 S 0.203 5.797 13 C 0.000 4.000 14 N -0.433 5.433 15 C -0.117 4.117 16 C 0.129 3.871 17 N -0.605 5.605 18 C -0.258 4.258 19 H 0.084 0.916 20 C 0.023 3.977 21 N -0.910 5.910 22 Si 0.882 3.118 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.149 3.851 27 C -0.117 4.117 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.188 0.812 36 H 0.206 0.794 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.025 0.975 41 H 0.262 0.738 42 H 0.062 0.938 43 H 0.023 0.977 44 H 0.064 0.936 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.420 1.025 -21.247 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.095 0.905 4 C -0.160 4.160 5 C -0.061 4.061 6 C -0.010 4.010 7 N -0.323 5.323 8 C 0.390 3.610 9 O -0.421 6.421 10 C -0.122 4.122 11 C -0.367 4.367 12 S 0.458 5.542 13 C -0.300 4.300 14 N -0.148 5.148 15 C -0.156 4.156 16 C 0.003 3.997 17 N -0.328 5.328 18 C -0.386 4.386 19 H 0.102 0.898 20 C -0.176 4.176 21 N -0.553 5.553 22 Si 0.713 3.287 23 H -0.217 1.217 24 H -0.233 1.233 25 H -0.195 1.195 26 C 0.024 3.976 27 C -0.156 4.156 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.206 0.794 36 H 0.223 0.777 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.041 0.959 44 H 0.083 0.917 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.402 1.087 -21.807 24.632 hybrid contribution -1.166 0.143 1.326 1.771 sum -12.568 1.230 -20.481 24.061 Atomic orbital electron populations 1.22119 0.94876 1.02142 1.02684 1.21760 0.94210 0.96375 0.84235 0.90505 1.22842 0.97435 0.99710 0.96055 1.21033 0.95017 0.96643 0.93394 1.22662 0.95933 0.87047 0.95318 1.48524 1.50898 1.28669 1.04194 1.16671 0.80144 0.83452 0.80720 1.90789 1.40809 1.27237 1.83263 1.20495 1.02494 0.95880 0.93319 1.26600 1.06757 1.06564 0.96792 1.82933 1.41848 1.17046 1.12410 1.28624 1.05217 1.05368 0.90784 1.67196 1.10125 1.06580 1.30878 1.21827 1.00687 0.95220 0.97909 1.21339 0.90490 0.93957 0.93920 1.44336 1.15191 1.18661 1.54644 1.18930 0.85844 1.30839 1.02992 0.89808 1.25277 0.96361 0.98800 0.97172 1.69842 1.27791 1.33363 1.24298 0.86951 0.85048 0.77945 0.78755 1.21670 1.23289 1.19545 1.20971 0.99006 0.88672 0.88990 1.21803 0.96278 0.98168 0.99355 0.91570 0.91511 0.92651 0.90664 0.89300 0.88194 0.91738 0.79437 0.77728 0.92646 0.91329 0.91017 0.95682 0.92833 0.91960 0.95902 0.91727 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.10 37.16 0.34 -1.63 16 2 C 0.14 1.85 3.11 -66.58 -0.21 1.64 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.12 -1.71 4.44 -25.24 -0.11 -1.82 16 5 C -0.06 -0.90 0.55 -154.11 -0.08 -0.99 16 6 C 0.11 1.56 4.92 -2.87 -0.01 1.54 16 7 N -0.59 -8.38 3.07 -164.21 -0.50 -8.89 16 8 C 0.60 8.97 7.63 -12.59 -0.10 8.87 16 9 O -0.54 -9.12 15.77 5.25 0.08 -9.03 16 10 C 0.01 0.16 6.61 -84.52 -0.56 -0.40 16 11 C -0.22 -2.18 10.62 29.65 0.31 -1.87 16 12 S 0.20 1.29 22.97 -107.50 -2.47 -1.18 16 13 C 0.00 0.00 12.17 51.43 0.63 0.62 16 14 N -0.43 -4.96 7.35 -12.36 -0.09 -5.05 16 15 C -0.12 -1.97 4.84 -27.01 -0.13 -2.10 16 16 C 0.13 2.70 3.93 -3.63 -0.01 2.69 16 17 N -0.60 -14.01 2.75 -172.12 -0.47 -14.48 16 18 C -0.26 -7.13 10.02 -15.06 -0.15 -7.28 16 19 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 20 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 21 N -0.91 -27.80 13.97 55.49 0.78 -27.03 16 22 Si 0.88 22.21 24.36 -169.99 -4.14 18.07 16 23 H -0.29 -6.99 6.63 56.52 0.37 -6.62 16 24 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 25 H -0.27 -6.65 6.64 56.52 0.38 -6.28 16 26 C 0.15 2.88 6.21 -3.63 -0.02 2.86 16 27 C -0.12 -1.92 4.85 -27.01 -0.13 -2.05 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.91 6.92 -51.93 -0.36 0.55 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.00 7.68 -51.93 -0.40 0.60 16 32 H 0.09 1.31 6.17 -51.93 -0.32 0.99 16 33 H 0.10 1.42 5.96 -51.93 -0.31 1.11 16 34 H 0.06 0.87 7.99 -51.93 -0.41 0.46 16 35 H 0.19 1.65 8.03 -52.49 -0.42 1.22 16 36 H 0.21 0.94 8.06 -52.48 -0.42 0.51 16 37 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.07 1.68 4.46 -51.93 -0.23 1.45 16 40 H 0.03 0.52 6.60 -51.93 -0.34 0.18 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 43 H 0.02 0.43 6.55 -51.92 -0.34 0.09 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.82 7.82 -51.93 -0.41 0.41 16 LS Contribution 354.18 15.07 5.34 5.34 Total: -1.00 -32.82 354.18 -8.34 -41.16 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.52 Total: 0.44 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -0.33 Total: 0.65 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.29 Total: -55.44 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.07 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.47 Total: -1.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.82 -8.34 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086907374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.024 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds