Wall clock time and date at job start Tue Mar 31 2020 19:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.99104 * 2 1 4 4 C 1.54460 * 109.87891 * 121.08662 * 2 1 3 5 5 C 1.54393 * 103.03209 * 141.01412 * 4 2 1 6 6 C 1.54118 * 102.47728 * 325.26669 * 5 4 2 7 7 N 1.47555 * 110.02389 * 238.72034 * 2 1 3 8 8 C 1.34768 * 125.57472 * 61.62042 * 7 2 1 9 9 O 1.21631 * 120.00115 * 359.93521 * 8 7 2 10 10 C 1.47273 * 120.00202 * 179.97438 * 8 7 2 11 11 C 1.35204 * 123.14426 * 179.73414 * 10 8 7 12 12 S 1.70941 * 108.82857 * 179.87209 * 11 10 8 13 13 C 1.70767 * 91.12730 * 0.32863 * 12 11 10 14 14 N 1.28650 * 110.56350 * 359.80278 * 13 12 11 15 15 C 1.52102 * 110.50660 * 207.27055 * 5 4 2 16 16 C 1.53344 * 109.44332 * 295.90885 * 15 5 4 17 17 N 1.46925 * 108.69223 * 306.70872 * 16 15 5 18 18 C 1.36936 * 120.55116 * 234.36438 * 17 16 15 19 19 H 1.08006 * 120.00119 * 152.40157 * 18 17 16 20 20 C 1.38803 * 120.00049 * 332.40723 * 18 17 16 21 21 N 1.31624 * 120.00353 * 159.35881 * 20 18 17 22 22 Si 1.86806 * 119.99839 * 339.35809 * 20 18 17 23 23 H 1.48501 * 109.47123 * 93.27326 * 22 20 18 24 24 H 1.48501 * 109.46967 * 213.26781 * 22 20 18 25 25 H 1.48496 * 109.47048 * 333.26851 * 22 20 18 26 26 C 1.46937 * 118.89809 * 54.33308 * 17 16 15 27 27 C 1.52105 * 110.50932 * 83.24359 * 5 4 2 28 28 H 1.09002 * 109.46777 * 298.91540 * 1 2 3 29 29 H 1.08997 * 109.46962 * 58.91365 * 1 2 3 30 30 H 1.08995 * 109.46862 * 178.91841 * 1 2 3 31 31 H 1.08995 * 110.73251 * 22.58077 * 4 2 1 32 32 H 1.08999 * 110.73080 * 259.44797 * 4 2 1 33 33 H 1.09001 * 110.37930 * 154.91041 * 6 5 4 34 34 H 1.09004 * 110.37774 * 277.14477 * 6 5 4 35 35 H 1.07999 * 125.58480 * 0.02562 * 11 10 8 36 36 H 1.08003 * 124.72160 * 179.84344 * 13 12 11 37 37 H 1.09005 * 109.47917 * 55.90646 * 15 5 4 38 38 H 1.09000 * 109.47479 * 175.91786 * 15 5 4 39 39 H 1.08998 * 109.60374 * 186.94154 * 16 15 5 40 40 H 1.09003 * 109.59624 * 66.46646 * 16 15 5 41 41 H 0.97001 * 119.99911 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.60472 * 185.89073 * 26 17 16 43 43 H 1.09008 * 109.59660 * 65.41593 * 26 17 16 44 44 H 1.08997 * 109.47678 * 184.06910 * 27 5 4 45 45 H 1.08999 * 109.48145 * 304.09436 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0553 -0.7500 1.2440 5 6 3.2732 -1.5242 0.6953 6 6 2.8228 -1.8838 -0.7341 7 7 2.0353 -0.7198 -1.1848 8 6 1.8143 -0.3707 -2.4676 9 8 1.1465 0.6131 -2.7237 10 6 2.3805 -1.1809 -3.5594 11 6 2.1946 -0.8923 -4.8671 12 16 3.0100 -2.0610 -5.8113 13 6 3.5435 -2.8726 -4.4067 14 7 3.1209 -2.2726 -3.3501 15 6 3.5181 -2.7822 1.5144 16 6 3.8894 -2.3921 2.9502 17 7 5.0108 -1.4439 2.9055 18 6 6.1595 -1.6907 3.6089 19 1 7.1008 -1.2888 3.2640 20 6 6.1142 -2.4576 4.7649 21 7 7.2080 -3.0350 5.2151 22 14 4.5006 -2.6702 5.6820 23 1 3.8252 -3.9075 5.2151 24 1 4.7692 -2.7727 7.1390 25 1 3.6250 -1.4996 5.4212 26 6 4.8795 -0.2267 2.0930 27 6 4.5027 -0.6293 0.6621 28 1 -0.3633 0.4969 0.8996 29 1 -0.3633 0.5306 -0.8801 30 1 -0.3633 -1.0275 -0.0194 31 1 1.3013 -1.4378 1.6267 32 1 2.3620 -0.0463 2.0178 33 1 3.6889 -2.0290 -1.3797 34 1 2.2041 -2.7812 -0.7227 35 1 1.6264 -0.0584 -5.2521 36 1 4.1518 -3.7651 -4.4055 37 1 2.6137 -3.3906 1.5254 38 1 4.3341 -3.3520 1.0701 39 1 4.1847 -3.2819 3.5061 40 1 3.0330 -1.9230 3.4347 41 1 7.1763 -3.5706 6.0232 42 1 5.8276 0.3110 2.0840 43 1 4.0995 0.4097 2.5112 44 1 5.3327 -1.1688 0.2060 45 1 4.2857 0.2651 0.0782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086907374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:34 Heat of formation + Delta-G solvation = 24.575976 kcal Electronic energy + Delta-G solvation = -27864.173422 eV Core-core repulsion = 24201.538253 eV Total energy + Delta-G solvation = -3662.635169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.01925 -40.74960 -39.36749 -37.67692 -34.80209 -33.02548 -32.97345 -31.99191 -31.52416 -28.90582 -27.17822 -26.94465 -25.62926 -24.57573 -23.89209 -22.73366 -21.81347 -20.30324 -19.83503 -19.27406 -18.46809 -17.63200 -17.18057 -17.04596 -16.74785 -16.16929 -15.92544 -15.49903 -15.38484 -15.29588 -14.89201 -14.78359 -14.43333 -14.34683 -14.30664 -14.03443 -13.72432 -13.58673 -13.29296 -13.17282 -13.00465 -12.86166 -12.51334 -12.23546 -12.17429 -12.02019 -11.95397 -11.65745 -11.53495 -11.18293 -11.16868 -11.05272 -10.72386 -10.70584 -10.51980 -10.03278 -9.62722 -8.87120 -8.13592 -5.44734 -0.45878 0.34681 0.65140 0.95535 1.32495 1.44392 1.53522 1.95935 2.27860 2.44706 3.07771 3.09477 3.36717 3.48169 3.56123 3.80804 3.92945 4.10416 4.12553 4.16988 4.25375 4.35683 4.39185 4.41815 4.54571 4.56214 4.68874 4.73223 4.78921 4.80875 4.84978 4.86199 4.96487 5.04768 5.09773 5.18265 5.21817 5.23448 5.27335 5.37548 5.44647 5.55558 5.90442 6.15699 6.37564 6.48329 6.96047 7.03125 7.66635 8.06807 9.06595 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018323 B = 0.003323 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.754633 B = 8424.352400 C = 9306.674977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 H 0.069 0.931 4 C -0.116 4.116 5 C -0.058 4.058 6 C 0.127 3.873 7 N -0.594 5.594 8 C 0.598 3.402 9 O -0.573 6.573 10 C -0.019 4.019 11 C -0.239 4.239 12 S 0.296 5.704 13 C -0.009 4.009 14 N -0.465 5.465 15 C -0.107 4.107 16 C 0.123 3.877 17 N -0.617 5.617 18 C -0.247 4.247 19 H 0.047 0.953 20 C -0.036 4.036 21 N -0.960 5.960 22 Si 0.947 3.053 23 H -0.272 1.272 24 H -0.315 1.315 25 H -0.258 1.258 26 C 0.147 3.853 27 C -0.103 4.103 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.190 0.810 36 H 0.236 0.764 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.038 0.962 41 H 0.261 0.739 42 H 0.049 0.951 43 H 0.039 0.961 44 H 0.051 0.949 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.635 0.305 -23.242 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.033 3.967 3 H 0.087 0.913 4 C -0.153 4.153 5 C -0.059 4.059 6 C 0.005 3.995 7 N -0.325 5.325 8 C 0.385 3.615 9 O -0.454 6.454 10 C -0.154 4.154 11 C -0.382 4.382 12 S 0.551 5.449 13 C -0.307 4.307 14 N -0.180 5.180 15 C -0.146 4.146 16 C -0.001 4.001 17 N -0.342 5.342 18 C -0.377 4.377 19 H 0.065 0.935 20 C -0.230 4.230 21 N -0.606 5.606 22 Si 0.776 3.224 23 H -0.198 1.198 24 H -0.244 1.244 25 H -0.182 1.182 26 C 0.022 3.978 27 C -0.142 4.142 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.208 0.792 36 H 0.252 0.748 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.645 0.367 -23.851 27.481 hybrid contribution -0.382 0.395 1.739 1.823 sum -14.027 0.762 -22.112 26.197 Atomic orbital electron populations 1.22039 0.93810 1.02347 1.02754 1.21777 0.95047 0.95893 0.84004 0.91335 1.22795 0.96993 0.99630 0.95928 1.20944 0.94857 0.95755 0.94365 1.22479 0.95964 0.87166 0.93932 1.48574 1.50843 1.28695 1.04355 1.17103 0.79710 0.83358 0.81316 1.90754 1.42269 1.28631 1.83763 1.20291 1.04652 0.97094 0.93347 1.26877 1.06726 1.07609 0.96959 1.82635 1.38869 1.13858 1.09496 1.29167 1.04584 1.05893 0.91104 1.67142 1.11204 1.06914 1.32786 1.21693 1.01575 0.96187 0.95157 1.21408 0.89735 0.92539 0.96432 1.44440 1.14520 1.20615 1.54621 1.18855 0.86367 1.29366 1.03081 0.93477 1.25907 0.99677 0.99286 0.98163 1.69979 1.30319 1.35289 1.25030 0.85895 0.81157 0.78930 0.76402 1.19834 1.24419 1.18213 1.21099 0.99009 0.87521 0.90168 1.21620 0.96638 0.98822 0.97143 0.89863 0.93120 0.92240 0.89211 0.89838 0.88490 0.90897 0.79235 0.74828 0.89701 0.92423 0.93416 0.94392 0.93044 0.93259 0.94310 0.93010 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.10 71.98 0.66 -2.79 16 2 C 0.14 3.43 3.11 45.29 0.14 3.57 16 3 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.12 -2.92 4.44 31.56 0.14 -2.78 16 5 C -0.06 -1.64 0.55 -51.92 -0.03 -1.67 16 6 C 0.13 3.26 4.92 86.55 0.43 3.69 16 7 N -0.59 -16.06 3.07 -791.68 -2.43 -18.49 16 8 C 0.60 17.40 7.63 86.62 0.66 18.06 16 9 O -0.57 -19.29 15.77 -4.13 -0.07 -19.35 16 10 C -0.02 -0.45 6.61 40.56 0.27 -0.18 16 11 C -0.24 -4.24 10.62 67.12 0.71 -3.53 16 12 S 0.30 2.78 22.97 -56.49 -1.30 1.49 16 13 C -0.01 -0.11 12.17 130.71 1.59 1.48 16 14 N -0.47 -9.81 7.35 -193.02 -1.42 -11.23 16 15 C -0.11 -3.36 4.84 30.41 0.15 -3.21 16 16 C 0.12 4.97 3.93 86.41 0.34 5.31 16 17 N -0.62 -28.41 2.75 -698.48 -1.92 -30.34 16 18 C -0.25 -14.00 10.02 84.03 0.84 -13.15 16 19 H 0.05 2.95 8.06 -2.91 -0.02 2.93 16 20 C -0.04 -2.10 5.23 84.86 0.44 -1.65 16 21 N -0.96 -60.53 13.97 21.65 0.30 -60.22 16 22 Si 0.95 46.06 24.36 68.60 1.67 47.73 16 23 H -0.27 -12.35 6.63 99.48 0.66 -11.69 16 24 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 25 H -0.26 -11.86 6.64 99.48 0.66 -11.20 16 26 C 0.15 5.59 6.21 86.41 0.54 6.13 16 27 C -0.10 -3.29 4.85 30.41 0.15 -3.14 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.33 6.92 -2.39 -0.02 1.31 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 2.04 7.68 -2.39 -0.02 2.02 16 32 H 0.08 2.22 6.17 -2.39 -0.01 2.21 16 33 H 0.10 2.62 5.96 -2.39 -0.01 2.60 16 34 H 0.07 1.78 7.99 -2.38 -0.02 1.76 16 35 H 0.19 3.13 8.03 -2.91 -0.02 3.11 16 36 H 0.24 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.08 2.21 8.09 -2.38 -0.02 2.19 16 38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 2.16 4.46 -2.39 -0.01 2.15 16 40 H 0.04 1.45 6.60 -2.39 -0.02 1.43 16 41 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 42 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 43 H 0.04 1.38 6.55 -2.38 -0.02 1.37 16 44 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.06 1.92 7.82 -2.39 -0.02 1.90 16 Total: -1.00 -73.58 354.18 2.77 -70.82 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.91 Total: 13.47 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 7.02 Total: 6.13 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -5.47 Total: -120.28 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.07 Total: -19.35 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.73 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.30 Total: 1.49 kcal Total: -73.58 2.77 -70.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086907374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.395 kcal (2) G-P(sol) polarization free energy of solvation -73.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds