Wall clock time and date at job start Tue Mar 31 2020 19:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 110.31821 * 2 1 4 4 C 1.55025 * 110.35447 * 237.68058 * 2 1 3 5 5 C 1.54519 * 101.53508 * 204.76206 * 4 2 1 6 6 C 1.53696 * 103.64207 * 34.82278 * 5 4 2 7 7 N 1.47178 * 107.11287 * 338.45269 * 6 5 4 8 8 C 1.34781 * 125.66059 * 178.47168 * 7 6 5 9 9 O 1.21627 * 119.99814 * 180.02562 * 8 7 6 10 10 C 1.47105 * 119.99841 * 0.02979 * 8 7 6 11 11 C 1.38385 * 127.99191 * 179.70312 * 10 8 7 12 12 C 1.37579 * 111.25930 * 179.88825 * 11 10 8 13 13 N 1.29556 * 117.94886 * 0.42680 * 12 11 10 14 14 S 1.56307 * 110.38156 * 359.76185 * 13 12 11 15 15 C 1.52268 * 110.20121 * 276.40869 * 5 4 2 16 16 C 1.53317 * 109.41815 * 177.81166 * 15 5 4 17 17 N 1.46927 * 108.70709 * 53.50965 * 16 15 5 18 18 C 1.36943 * 120.56472 * 125.74550 * 17 16 15 19 19 H 1.08001 * 119.99585 * 332.19412 * 18 17 16 20 20 C 1.38811 * 119.99966 * 152.19398 * 18 17 16 21 21 N 1.31617 * 120.00162 * 342.68424 * 20 18 17 22 22 Si 1.86799 * 119.99877 * 162.68259 * 20 18 17 23 23 H 1.48502 * 109.47345 * 270.00172 * 22 20 18 24 24 H 1.48501 * 109.47062 * 29.99940 * 22 20 18 25 25 H 1.48496 * 109.47511 * 150.00006 * 22 20 18 26 26 C 1.46927 * 118.87372 * 306.01803 * 17 16 15 27 27 C 1.52277 * 110.20140 * 153.22312 * 5 4 2 28 28 H 1.09001 * 109.47051 * 299.25074 * 1 2 3 29 29 H 1.08996 * 109.47633 * 59.25088 * 1 2 3 30 30 H 1.09003 * 109.47426 * 179.25114 * 1 2 3 31 31 H 1.09003 * 111.01382 * 86.70274 * 4 2 1 32 32 H 1.08999 * 111.01231 * 322.82720 * 4 2 1 33 33 H 1.09000 * 109.90910 * 97.83090 * 6 5 4 34 34 H 1.09006 * 109.90601 * 219.08572 * 6 5 4 35 35 H 1.07996 * 124.37035 * 0.02978 * 11 10 8 36 36 H 1.08002 * 121.02719 * 180.19056 * 12 11 10 37 37 H 1.09001 * 109.48489 * 57.83080 * 15 5 4 38 38 H 1.08997 * 109.48378 * 297.79450 * 15 5 4 39 39 H 1.08997 * 109.59641 * 293.73919 * 16 15 5 40 40 H 1.09001 * 109.72609 * 173.35278 * 16 15 5 41 41 H 0.96999 * 120.00142 * 180.02562 * 21 20 18 42 42 H 1.09002 * 109.60145 * 173.75310 * 26 17 16 43 43 H 1.09004 * 109.59783 * 294.21639 * 26 17 16 44 44 H 1.08999 * 109.47934 * 302.17348 * 27 5 4 45 45 H 1.08997 * 109.48249 * 62.21064 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9084 1.0221 0.0000 4 6 2.0691 -0.7771 -1.2283 5 6 3.4656 -1.2122 -0.7300 6 6 3.2491 -1.4784 0.7682 7 7 2.0429 -0.7369 1.1700 8 6 1.4974 -0.7324 2.4025 9 8 0.4945 -0.0801 2.6212 10 6 2.1152 -1.5165 3.4830 11 6 1.7020 -1.6263 4.7992 12 6 2.5339 -2.4555 5.5156 13 7 3.5417 -2.9857 4.8979 14 16 3.5636 -2.5317 3.4023 15 6 4.4712 -0.0875 -0.9355 16 6 5.8363 -0.5175 -0.3858 17 7 6.2053 -1.8032 -0.9938 18 6 7.4035 -1.9492 -1.6407 19 1 7.8749 -1.0947 -2.1033 20 6 8.0120 -3.1953 -1.7017 21 7 7.6408 -4.1501 -0.8754 22 14 9.3576 -3.5171 -2.9568 23 1 8.7513 -4.0273 -4.2128 24 1 10.0861 -2.2537 -3.2364 25 1 10.3051 -4.5262 -2.4190 26 6 5.2645 -2.9279 -0.9011 27 6 3.9055 -2.4839 -1.4428 28 1 -0.3633 0.5022 0.8966 29 1 -0.3634 0.5254 -0.8831 30 1 -0.3634 -1.0276 -0.0134 31 1 2.1502 -0.1254 -2.0983 32 1 1.4449 -1.6433 -1.4476 33 1 3.1030 -2.5451 0.9384 34 1 4.1092 -1.1238 1.3362 35 1 0.8369 -1.1274 5.2103 36 1 2.3545 -2.6552 6.5618 37 1 4.1319 0.8044 -0.4087 38 1 4.5603 0.1306 -1.9997 39 1 5.7758 -0.6289 0.6968 40 1 6.5863 0.2333 -0.6347 41 1 8.0663 -5.0208 -0.9178 42 1 5.6361 -3.7651 -1.4919 43 1 5.1585 -3.2311 0.1405 44 1 3.1701 -3.2698 -1.2711 45 1 3.9887 -2.2909 -2.5123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086925784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:15 Heat of formation + Delta-G solvation = 36.487448 kcal Electronic energy + Delta-G solvation = -27982.793419 eV Core-core repulsion = 24320.674771 eV Total energy + Delta-G solvation = -3662.118649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.70362 -39.36785 -38.28639 -36.03241 -33.19750 -32.58766 -31.05824 -30.85824 -30.00407 -27.34635 -26.43756 -25.52827 -24.28931 -23.03235 -22.29221 -21.24246 -20.31505 -19.52418 -18.42519 -18.00143 -16.78704 -16.62741 -16.21907 -15.59522 -14.96418 -14.89649 -14.48676 -14.32336 -13.97862 -13.90683 -13.41760 -13.39503 -13.34449 -13.07944 -12.86851 -12.64134 -12.21820 -12.00611 -11.81614 -11.58215 -11.35006 -11.26249 -11.17580 -10.99918 -10.79003 -10.71219 -10.42728 -10.29723 -10.19784 -9.93411 -9.78686 -9.69461 -9.60923 -9.42244 -8.90561 -8.64027 -8.49609 -6.71177 -5.82829 -3.25166 0.26224 1.27699 1.89063 2.14756 2.82370 3.04879 3.35426 3.43180 3.43757 4.27892 4.46243 4.57040 4.76920 4.90049 4.91269 5.01163 5.14403 5.22799 5.34894 5.35201 5.49250 5.52131 5.57200 5.66991 5.69389 5.73046 5.78258 5.87688 5.95403 6.01566 6.13366 6.15918 6.23024 6.41809 6.44184 6.46822 6.52370 6.57452 6.63871 6.75516 6.88169 7.28159 7.40900 7.59730 7.76661 8.03134 8.41027 9.17416 9.80521 10.36334 11.25523 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013545 B = 0.004195 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.733156 B = 6672.952339 C = 8256.403314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.079 0.921 4 C -0.124 4.124 5 C -0.049 4.049 6 C 0.094 3.906 7 N -0.605 5.605 8 C 0.612 3.388 9 O -0.532 6.532 10 C -0.278 4.278 11 C -0.116 4.116 12 C 0.051 3.949 13 N -0.533 5.533 14 S 0.462 5.538 15 C -0.121 4.121 16 C 0.143 3.857 17 N -0.589 5.589 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.005 3.995 21 N -0.901 5.901 22 Si 0.900 3.100 23 H -0.288 1.288 24 H -0.279 1.279 25 H -0.292 1.292 26 C 0.168 3.832 27 C -0.129 4.129 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.172 0.828 36 H 0.179 0.821 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.017 0.983 40 H 0.056 0.944 41 H 0.254 0.746 42 H 0.090 0.910 43 H 0.019 0.981 44 H 0.052 0.948 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.385 5.519 5.277 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 H 0.096 0.904 4 C -0.162 4.162 5 C -0.050 4.050 6 C -0.030 4.030 7 N -0.338 5.338 8 C 0.400 3.600 9 O -0.410 6.410 10 C -0.411 4.411 11 C -0.152 4.152 12 C -0.140 4.140 13 N -0.363 5.363 14 S 0.618 5.382 15 C -0.161 4.161 16 C 0.016 3.984 17 N -0.312 5.312 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.545 5.545 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.205 1.205 25 H -0.218 1.218 26 C 0.042 3.958 27 C -0.168 4.168 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.189 0.811 36 H 0.196 0.804 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.037 0.963 44 H 0.071 0.929 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.044 4.608 4.844 13.775 hybrid contribution -0.664 0.396 0.423 0.881 sum -12.708 5.003 5.267 14.638 Atomic orbital electron populations 1.22189 0.94006 1.02623 1.03461 1.21977 0.94875 0.95573 0.83994 0.90358 1.23014 0.96330 1.00264 0.96580 1.20909 0.94270 0.98011 0.91813 1.22479 0.86638 0.96342 0.97530 1.48528 1.28426 1.48112 1.08764 1.16283 0.83037 0.80572 0.80102 1.90732 1.24872 1.43751 1.81687 1.26912 1.05938 1.09195 0.99104 1.22045 1.01949 0.99638 0.91538 1.22214 0.91376 0.97522 1.02908 1.72108 1.25543 1.27850 1.10837 1.82684 1.18547 1.31309 1.05648 1.21959 0.96821 0.95559 1.01735 1.20968 0.93079 0.89672 0.94653 1.44003 1.16807 1.06941 1.63423 1.19183 0.97297 0.94988 1.26819 0.91696 1.25008 0.98097 0.97886 0.98412 1.70018 1.44443 1.04203 1.35872 0.86323 0.81505 0.77748 0.81379 1.21474 1.20475 1.21809 1.20762 0.85209 0.91688 0.98171 1.22081 1.00309 0.94210 1.00207 0.89643 0.92019 0.92719 0.89693 0.90541 0.90706 0.89912 0.81076 0.80449 0.92970 0.91513 0.96491 0.92572 0.93606 0.89232 0.96290 0.92917 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 8.71 37.15 0.32 -1.60 16 2 C 0.14 1.69 3.44 -66.33 -0.23 1.46 16 3 H 0.08 0.94 7.76 -51.93 -0.40 0.54 16 4 C -0.12 -1.46 5.41 -24.86 -0.13 -1.60 16 5 C -0.05 -0.70 0.53 -154.09 -0.08 -0.78 16 6 C 0.09 1.34 3.43 -3.31 -0.01 1.33 16 7 N -0.60 -8.35 3.25 -164.58 -0.53 -8.88 16 8 C 0.61 9.04 7.62 -12.66 -0.10 8.95 16 9 O -0.53 -8.74 14.62 5.25 0.08 -8.67 16 10 C -0.28 -3.76 6.64 -35.93 -0.24 -4.00 16 11 C -0.12 -1.33 10.40 -39.77 -0.41 -1.74 16 12 C 0.05 0.57 11.15 -18.75 -0.21 0.37 16 13 N -0.53 -7.51 11.29 21.63 0.24 -7.26 16 14 S 0.46 6.43 19.36 -107.50 -2.08 4.35 16 15 C -0.12 -1.84 4.78 -26.94 -0.13 -1.97 16 16 C 0.14 2.70 6.23 -3.65 -0.02 2.68 16 17 N -0.59 -13.46 2.99 -172.43 -0.52 -13.98 16 18 C -0.25 -6.55 9.57 -15.06 -0.14 -6.69 16 19 H 0.07 1.67 7.89 -52.49 -0.41 1.25 16 20 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 21 N -0.90 -24.90 11.20 55.49 0.62 -24.28 16 22 Si 0.90 20.93 29.59 -169.99 -5.03 15.90 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.17 3.58 5.02 -3.87 -0.02 3.56 16 27 C -0.13 -2.13 4.69 -27.16 -0.13 -2.25 16 28 H 0.08 1.15 5.89 -51.93 -0.31 0.84 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.90 8.01 -51.93 -0.42 0.49 16 32 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 33 H 0.07 1.08 6.41 -51.93 -0.33 0.75 16 34 H 0.08 1.26 5.11 -51.93 -0.27 0.99 16 35 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.05 0.71 7.49 -51.93 -0.39 0.32 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.33 6.53 -51.93 -0.34 -0.01 16 40 H 0.06 1.07 7.93 -51.93 -0.41 0.65 16 41 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.09 2.21 6.02 -51.93 -0.31 1.90 16 43 H 0.02 0.42 7.47 -51.93 -0.39 0.03 16 44 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 355.65 15.07 5.36 5.36 Total: -1.00 -29.59 355.65 -9.96 -39.55 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.48 Total: 0.16 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -1.62 Total: -2.26 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.18 Total: -54.40 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Atomic # 16 Polarization: 6.43 SS G_CDS: -2.08 Total: 4.35 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.59 -9.96 -39.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086925784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.039 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds