Wall clock time and date at job start Tue Mar 31 2020 19:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 110.31821 * 2 1 4 4 C 1.55025 * 110.35447 * 237.68058 * 2 1 3 5 5 C 1.54519 * 101.53508 * 204.76206 * 4 2 1 6 6 C 1.53696 * 103.64207 * 34.82278 * 5 4 2 7 7 N 1.47178 * 107.11287 * 338.45269 * 6 5 4 8 8 C 1.34781 * 125.66059 * 178.47168 * 7 6 5 9 9 O 1.21627 * 119.99814 * 180.02562 * 8 7 6 10 10 C 1.47105 * 119.99841 * 0.02979 * 8 7 6 11 11 C 1.38385 * 127.99191 * 179.70312 * 10 8 7 12 12 C 1.37579 * 111.25930 * 179.88825 * 11 10 8 13 13 N 1.29556 * 117.94886 * 0.42680 * 12 11 10 14 14 S 1.56307 * 110.38156 * 359.76185 * 13 12 11 15 15 C 1.52268 * 110.20121 * 276.40869 * 5 4 2 16 16 C 1.53317 * 109.41815 * 177.81166 * 15 5 4 17 17 N 1.46927 * 108.70709 * 53.50965 * 16 15 5 18 18 C 1.36943 * 120.56472 * 125.74550 * 17 16 15 19 19 H 1.08001 * 119.99585 * 332.19412 * 18 17 16 20 20 C 1.38811 * 119.99966 * 152.19398 * 18 17 16 21 21 N 1.31617 * 120.00162 * 342.68424 * 20 18 17 22 22 Si 1.86799 * 119.99877 * 162.68259 * 20 18 17 23 23 H 1.48502 * 109.47345 * 270.00172 * 22 20 18 24 24 H 1.48501 * 109.47062 * 29.99940 * 22 20 18 25 25 H 1.48496 * 109.47511 * 150.00006 * 22 20 18 26 26 C 1.46927 * 118.87372 * 306.01803 * 17 16 15 27 27 C 1.52277 * 110.20140 * 153.22312 * 5 4 2 28 28 H 1.09001 * 109.47051 * 299.25074 * 1 2 3 29 29 H 1.08996 * 109.47633 * 59.25088 * 1 2 3 30 30 H 1.09003 * 109.47426 * 179.25114 * 1 2 3 31 31 H 1.09003 * 111.01382 * 86.70274 * 4 2 1 32 32 H 1.08999 * 111.01231 * 322.82720 * 4 2 1 33 33 H 1.09000 * 109.90910 * 97.83090 * 6 5 4 34 34 H 1.09006 * 109.90601 * 219.08572 * 6 5 4 35 35 H 1.07996 * 124.37035 * 0.02978 * 11 10 8 36 36 H 1.08002 * 121.02719 * 180.19056 * 12 11 10 37 37 H 1.09001 * 109.48489 * 57.83080 * 15 5 4 38 38 H 1.08997 * 109.48378 * 297.79450 * 15 5 4 39 39 H 1.08997 * 109.59641 * 293.73919 * 16 15 5 40 40 H 1.09001 * 109.72609 * 173.35278 * 16 15 5 41 41 H 0.96999 * 120.00142 * 180.02562 * 21 20 18 42 42 H 1.09002 * 109.60145 * 173.75310 * 26 17 16 43 43 H 1.09004 * 109.59783 * 294.21639 * 26 17 16 44 44 H 1.08999 * 109.47934 * 302.17348 * 27 5 4 45 45 H 1.08997 * 109.48249 * 62.21064 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9084 1.0221 0.0000 4 6 2.0691 -0.7771 -1.2283 5 6 3.4656 -1.2122 -0.7300 6 6 3.2491 -1.4784 0.7682 7 7 2.0429 -0.7369 1.1700 8 6 1.4974 -0.7324 2.4025 9 8 0.4945 -0.0801 2.6212 10 6 2.1152 -1.5165 3.4830 11 6 1.7020 -1.6263 4.7992 12 6 2.5339 -2.4555 5.5156 13 7 3.5417 -2.9857 4.8979 14 16 3.5636 -2.5317 3.4023 15 6 4.4712 -0.0875 -0.9355 16 6 5.8363 -0.5175 -0.3858 17 7 6.2053 -1.8032 -0.9938 18 6 7.4035 -1.9492 -1.6407 19 1 7.8749 -1.0947 -2.1033 20 6 8.0120 -3.1953 -1.7017 21 7 7.6408 -4.1501 -0.8754 22 14 9.3576 -3.5171 -2.9568 23 1 8.7513 -4.0273 -4.2128 24 1 10.0861 -2.2537 -3.2364 25 1 10.3051 -4.5262 -2.4190 26 6 5.2645 -2.9279 -0.9011 27 6 3.9055 -2.4839 -1.4428 28 1 -0.3633 0.5022 0.8966 29 1 -0.3634 0.5254 -0.8831 30 1 -0.3634 -1.0276 -0.0134 31 1 2.1502 -0.1254 -2.0983 32 1 1.4449 -1.6433 -1.4476 33 1 3.1030 -2.5451 0.9384 34 1 4.1092 -1.1238 1.3362 35 1 0.8369 -1.1274 5.2103 36 1 2.3545 -2.6552 6.5618 37 1 4.1319 0.8044 -0.4087 38 1 4.5603 0.1306 -1.9997 39 1 5.7758 -0.6289 0.6968 40 1 6.5863 0.2333 -0.6347 41 1 8.0663 -5.0208 -0.9178 42 1 5.6361 -3.7651 -1.4919 43 1 5.1585 -3.2311 0.1405 44 1 3.1701 -3.2698 -1.2711 45 1 3.9887 -2.2909 -2.5123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086925784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:14 Heat of formation + Delta-G solvation = 19.636207 kcal Electronic energy + Delta-G solvation = -27983.524144 eV Core-core repulsion = 24320.674771 eV Total energy + Delta-G solvation = -3662.849373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.84061 -40.41346 -39.48376 -37.46734 -34.77769 -33.64684 -32.63783 -31.91343 -31.53972 -28.78146 -27.49563 -26.58224 -25.92144 -24.23587 -23.64209 -22.67614 -21.41160 -20.61526 -19.75465 -19.12668 -18.41257 -17.64193 -17.40722 -16.85187 -16.63775 -15.95002 -15.77154 -15.59513 -15.38575 -15.06603 -14.87784 -14.71919 -14.45342 -14.31543 -14.16897 -13.85174 -13.30862 -13.26441 -13.10356 -12.97729 -12.81139 -12.55030 -12.45949 -12.38695 -12.22595 -12.00092 -11.98117 -11.80700 -11.71535 -11.30731 -11.05183 -10.93937 -10.84508 -10.78030 -10.45284 -9.93532 -9.72319 -8.58977 -7.81617 -5.25443 -0.75066 0.25577 0.88864 1.20770 1.49321 1.51398 1.58853 1.77144 1.96874 2.55354 3.21875 3.31230 3.47190 3.71366 3.77876 3.80735 4.00450 4.08269 4.09105 4.23225 4.31630 4.43367 4.48749 4.60187 4.61363 4.64907 4.74131 4.78928 4.83254 4.88671 4.96171 4.99326 5.09133 5.16679 5.22172 5.26465 5.30459 5.38031 5.44857 5.51210 5.53728 5.60761 5.71957 5.85765 6.30447 6.45613 6.92116 7.22275 7.94342 8.44203 9.23828 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013545 B = 0.004195 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.733156 B = 6672.952339 C = 8256.403314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.133 3.867 3 H 0.086 0.914 4 C -0.110 4.110 5 C -0.048 4.048 6 C 0.100 3.900 7 N -0.603 5.603 8 C 0.610 3.390 9 O -0.551 6.551 10 C -0.289 4.289 11 C -0.102 4.102 12 C 0.063 3.937 13 N -0.558 5.558 14 S 0.420 5.580 15 C -0.108 4.108 16 C 0.138 3.862 17 N -0.605 5.605 18 C -0.258 4.258 19 H 0.064 0.936 20 C -0.046 4.046 21 N -0.931 5.931 22 Si 0.958 3.042 23 H -0.286 1.286 24 H -0.271 1.271 25 H -0.299 1.299 26 C 0.174 3.826 27 C -0.115 4.115 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.196 0.804 36 H 0.217 0.783 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.014 0.986 40 H 0.051 0.949 41 H 0.248 0.752 42 H 0.051 0.949 43 H 0.003 0.997 44 H 0.069 0.931 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.188 6.931 5.109 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 H 0.104 0.896 4 C -0.148 4.148 5 C -0.049 4.049 6 C -0.024 4.024 7 N -0.336 5.336 8 C 0.399 3.601 9 O -0.431 6.431 10 C -0.422 4.422 11 C -0.138 4.138 12 C -0.128 4.128 13 N -0.387 5.387 14 S 0.576 5.424 15 C -0.147 4.147 16 C 0.013 3.987 17 N -0.329 5.329 18 C -0.388 4.388 19 H 0.082 0.918 20 C -0.241 4.241 21 N -0.578 5.578 22 Si 0.787 3.213 23 H -0.213 1.213 24 H -0.196 1.196 25 H -0.226 1.226 26 C 0.048 3.952 27 C -0.154 4.154 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.213 0.787 36 H 0.233 0.767 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.032 0.968 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.021 0.979 44 H 0.088 0.912 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.849 6.046 4.651 15.810 hybrid contribution -0.131 -0.006 0.606 0.620 sum -13.980 6.040 5.257 16.111 Atomic orbital electron populations 1.22101 0.93281 1.02374 1.03712 1.22166 0.95451 0.95811 0.83393 0.89570 1.22962 0.93953 1.00898 0.96981 1.20822 0.95791 0.96540 0.91700 1.22320 0.86539 0.96170 0.97325 1.48572 1.28039 1.47908 1.09070 1.16424 0.82823 0.80404 0.80485 1.90727 1.25652 1.44690 1.82061 1.26937 1.05901 1.09555 0.99842 1.22428 1.02095 0.98675 0.90613 1.22825 0.89871 0.95821 1.04330 1.72242 1.26902 1.28875 1.10687 1.82780 1.19954 1.32892 1.06734 1.21802 0.94466 0.96541 1.01897 1.21114 0.95295 0.87861 0.94462 1.44235 1.16422 1.08455 1.63771 1.19481 0.98111 0.94896 1.26307 0.91788 1.25652 1.00391 0.97970 1.00124 1.70166 1.45814 1.04259 1.37528 0.85402 0.79152 0.77451 0.79252 1.21288 1.19579 1.22632 1.20566 0.87372 0.90481 0.96742 1.21865 0.97645 0.95904 0.99987 0.91500 0.89554 0.93241 0.87531 0.89738 0.91178 0.91120 0.78675 0.76670 0.90652 0.91148 0.96840 0.93018 0.94292 0.93025 0.97931 0.91243 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 8.71 71.98 0.63 -2.60 16 2 C 0.13 2.89 3.44 45.49 0.16 3.05 16 3 H 0.09 1.78 7.76 -2.39 -0.02 1.76 16 4 C -0.11 -2.23 5.41 31.80 0.17 -2.06 16 5 C -0.05 -1.28 0.53 -51.91 -0.03 -1.30 16 6 C 0.10 2.79 3.43 86.48 0.30 3.09 16 7 N -0.60 -15.74 3.25 -792.85 -2.58 -18.32 16 8 C 0.61 17.31 7.62 86.57 0.66 17.97 16 9 O -0.55 -17.33 14.62 -4.12 -0.06 -17.40 16 10 C -0.29 -7.56 6.64 24.63 0.16 -7.40 16 11 C -0.10 -2.13 10.40 22.15 0.23 -1.90 16 12 C 0.06 1.30 11.15 84.87 0.95 2.24 16 13 N -0.56 -15.39 11.29 -85.47 -0.96 -16.36 16 14 S 0.42 11.86 19.36 -56.49 -1.09 10.77 16 15 C -0.11 -3.07 4.78 30.46 0.15 -2.92 16 16 C 0.14 5.20 6.23 86.40 0.54 5.73 16 17 N -0.61 -28.08 2.99 -699.45 -2.09 -30.18 16 18 C -0.26 -13.51 9.57 84.03 0.80 -12.70 16 19 H 0.06 3.30 7.89 -2.91 -0.02 3.28 16 20 C -0.05 -2.47 4.91 84.86 0.42 -2.05 16 21 N -0.93 -53.33 11.20 21.65 0.24 -53.09 16 22 Si 0.96 43.78 29.59 68.60 2.03 45.81 16 23 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 26 C 0.17 7.63 5.02 86.26 0.43 8.06 16 27 C -0.11 -3.70 4.69 30.31 0.14 -3.56 16 28 H 0.07 1.67 5.89 -2.39 -0.01 1.65 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.11 1.77 8.01 -2.39 -0.02 1.76 16 32 H 0.08 1.64 7.92 -2.39 -0.02 1.62 16 33 H 0.07 2.03 6.41 -2.39 -0.02 2.02 16 34 H 0.07 2.16 5.11 -2.38 -0.01 2.15 16 35 H 0.20 3.10 8.06 -2.91 -0.02 3.07 16 36 H 0.22 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.07 1.82 7.49 -2.39 -0.02 1.80 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.01 0.53 6.53 -2.39 -0.02 0.51 16 40 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 41 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 42 H 0.05 2.65 6.02 -2.39 -0.01 2.64 16 43 H 0.00 0.12 7.47 -2.39 -0.02 0.10 16 44 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 45 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -65.48 355.65 2.19 -63.28 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 1.00 Total: 11.81 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 5.70 Total: 3.66 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -5.39 Total: -117.94 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.06 Total: -17.40 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 11.86 SS G_CDS: -1.09 Total: 10.77 kcal Total: -65.48 2.19 -63.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086925784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.920 kcal (2) G-P(sol) polarization free energy of solvation -65.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds