Wall clock time and date at job start Tue Mar 31 2020 19:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.31817 * 2 1 4 4 C 1.55021 * 110.35501 * 237.67864 * 2 1 3 5 5 C 1.54514 * 101.53938 * 204.76213 * 4 2 1 6 6 C 1.53706 * 103.64146 * 34.82247 * 5 4 2 7 7 N 1.47178 * 107.11010 * 338.45883 * 6 5 4 8 8 C 1.34779 * 125.65925 * 178.51054 * 7 6 5 9 9 O 1.21574 * 119.99652 * 179.97438 * 8 7 6 10 10 C 1.47687 * 120.00012 * 359.97438 * 8 7 6 11 11 C 1.39487 * 122.10463 * 179.73819 * 10 8 7 12 12 C 1.34990 * 111.68589 * 179.78322 * 11 10 8 13 13 S 1.71764 * 105.45449 * 0.42869 * 12 11 10 14 14 N 1.30610 * 122.10655 * 0.02562 * 10 8 7 15 15 C 1.52274 * 110.20589 * 276.41302 * 5 4 2 16 16 C 1.53312 * 109.42130 * 177.80754 * 15 5 4 17 17 N 1.46927 * 108.70960 * 53.50830 * 16 15 5 18 18 C 1.36933 * 120.56410 * 125.74174 * 17 16 15 19 19 H 1.07996 * 120.00009 * 332.30316 * 18 17 16 20 20 C 1.38813 * 120.00015 * 152.57988 * 18 17 16 21 21 N 1.31620 * 120.00211 * 159.47102 * 20 18 17 22 22 Si 1.86808 * 119.99960 * 339.46938 * 20 18 17 23 23 H 1.48499 * 109.47078 * 93.18267 * 22 20 18 24 24 H 1.48492 * 109.47079 * 213.18352 * 22 20 18 25 25 H 1.48504 * 109.46855 * 333.18388 * 22 20 18 26 26 C 1.46932 * 118.87070 * 306.02076 * 17 16 15 27 27 C 1.52274 * 110.20672 * 153.22096 * 5 4 2 28 28 H 1.08996 * 109.47011 * 299.24593 * 1 2 3 29 29 H 1.09002 * 109.47090 * 59.25084 * 1 2 3 30 30 H 1.09007 * 109.47023 * 179.24935 * 1 2 3 31 31 H 1.09008 * 111.01043 * 86.69966 * 4 2 1 32 32 H 1.09000 * 111.01426 * 322.83096 * 4 2 1 33 33 H 1.09004 * 109.90656 * 97.82423 * 6 5 4 34 34 H 1.09003 * 109.90736 * 218.90099 * 6 5 4 35 35 H 1.08008 * 124.15553 * 359.97438 * 11 10 8 36 36 H 1.08007 * 127.27208 * 180.17134 * 12 11 10 37 37 H 1.09001 * 109.47774 * 57.82015 * 15 5 4 38 38 H 1.08991 * 109.47539 * 297.79286 * 15 5 4 39 39 H 1.08996 * 109.59897 * 293.74329 * 16 15 5 40 40 H 1.08999 * 109.72196 * 173.35116 * 16 15 5 41 41 H 0.97001 * 119.99488 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.59773 * 173.74795 * 26 17 16 43 43 H 1.09001 * 109.60008 * 294.21445 * 26 17 16 44 44 H 1.09002 * 109.48402 * 302.18201 * 27 5 4 45 45 H 1.09003 * 109.47866 * 62.21152 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0221 0.0000 4 6 2.0692 -0.7771 -1.2282 5 6 3.4656 -1.2122 -0.7300 6 6 3.2492 -1.4784 0.7683 7 7 2.0430 -0.7369 1.1700 8 6 1.4979 -0.7319 2.4027 9 8 0.4958 -0.0792 2.6215 10 6 2.1179 -1.5192 3.4875 11 6 1.5941 -1.5414 4.7801 12 6 2.3213 -2.3299 5.5996 13 16 3.5987 -2.9438 4.6292 14 7 3.1945 -2.2342 3.2983 15 6 4.4713 -0.0875 -0.9354 16 6 5.8364 -0.5176 -0.3857 17 7 6.2055 -1.8033 -0.9937 18 6 7.4035 -1.9492 -1.6405 19 1 7.8758 -1.0945 -2.1017 20 6 8.0082 -3.1969 -1.7085 21 7 8.9112 -3.4411 -2.6343 22 14 7.5402 -4.5294 -0.4858 23 1 6.4605 -5.3716 -1.0605 24 1 8.7264 -5.3746 -0.1966 25 1 7.0615 -3.9012 0.7718 26 6 5.2645 -2.9279 -0.9011 27 6 3.9056 -2.4839 -1.4427 28 1 -0.3633 0.5021 0.8966 29 1 -0.3633 0.5254 -0.8832 30 1 -0.3633 -1.0276 -0.0135 31 1 2.1502 -0.1254 -2.0983 32 1 1.4450 -1.6433 -1.4476 33 1 3.1030 -2.5451 0.9384 34 1 4.1107 -1.1268 1.3360 35 1 0.7130 -0.9971 5.0867 36 1 2.1407 -2.5291 6.6456 37 1 4.1319 0.8043 -0.4087 38 1 4.5603 0.1305 -1.9996 39 1 5.7759 -0.6291 0.6968 40 1 6.5863 0.2332 -0.6347 41 1 9.3339 -4.3128 -2.6815 42 1 5.6361 -3.7652 -1.4919 43 1 5.1585 -3.2312 0.1405 44 1 3.1701 -3.2699 -1.2711 45 1 3.9888 -2.2909 -2.5123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086928825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:21 Heat of formation + Delta-G solvation = 45.520090 kcal Electronic energy + Delta-G solvation = -28189.692217 eV Core-core repulsion = 24527.965253 eV Total energy + Delta-G solvation = -3661.726964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.98315 -39.57759 -38.07840 -36.19900 -33.19193 -32.36770 -31.27497 -31.15103 -30.50484 -27.51911 -26.80671 -25.49177 -24.08153 -23.19617 -22.38376 -21.17974 -20.55402 -19.42615 -18.57509 -18.35614 -17.07792 -16.72407 -16.20828 -15.54119 -15.26805 -14.92558 -14.47445 -14.28891 -13.89102 -13.82832 -13.62433 -13.58359 -13.46179 -13.24716 -12.82683 -12.40780 -12.36282 -12.07210 -11.96815 -11.78590 -11.67167 -11.40446 -11.25925 -11.18870 -10.87087 -10.79754 -10.55864 -10.39902 -10.08632 -10.07579 -9.83639 -9.66283 -9.58646 -9.38002 -9.05633 -8.60973 -8.55094 -6.94382 -5.94290 -3.29682 0.42770 1.26882 1.60354 1.64862 2.92253 3.15617 3.31779 3.48223 3.51827 4.31362 4.53640 4.58377 4.63924 4.81728 4.88296 4.98200 5.08760 5.20746 5.28220 5.30323 5.34415 5.44131 5.54965 5.56795 5.64891 5.76287 5.85206 5.89569 5.94583 6.00224 6.04775 6.08568 6.14557 6.21894 6.27234 6.34684 6.47412 6.49875 6.54256 6.66133 6.69401 6.71130 6.96236 7.47765 7.97931 8.05858 8.33910 8.95615 9.73429 10.11759 11.21859 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011985 B = 0.004793 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.670266 B = 5840.814290 C = 7631.870407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 H 0.078 0.922 4 C -0.122 4.122 5 C -0.061 4.061 6 C 0.121 3.879 7 N -0.593 5.593 8 C 0.605 3.395 9 O -0.537 6.537 10 C 0.048 3.952 11 C -0.134 4.134 12 C -0.289 4.289 13 S 0.466 5.534 14 N -0.504 5.504 15 C -0.120 4.120 16 C 0.148 3.852 17 N -0.603 5.603 18 C -0.258 4.258 19 H 0.085 0.915 20 C 0.024 3.976 21 N -0.910 5.910 22 Si 0.881 3.119 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.269 1.269 26 C 0.126 3.874 27 C -0.118 4.118 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.170 0.830 36 H 0.185 0.815 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.022 0.978 40 H 0.063 0.937 41 H 0.262 0.738 42 H 0.072 0.928 43 H 0.026 0.974 44 H 0.054 0.946 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.014 3.167 13.013 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.033 3.967 3 H 0.096 0.904 4 C -0.160 4.160 5 C -0.062 4.062 6 C -0.002 4.002 7 N -0.325 5.325 8 C 0.389 3.611 9 O -0.414 6.414 10 C -0.126 4.126 11 C -0.167 4.167 12 C -0.437 4.437 13 S 0.621 5.379 14 N -0.339 5.339 15 C -0.159 4.159 16 C 0.022 3.978 17 N -0.327 5.327 18 C -0.386 4.386 19 H 0.102 0.898 20 C -0.175 4.175 21 N -0.553 5.553 22 Si 0.711 3.289 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.194 1.194 26 C 0.000 4.000 27 C -0.157 4.157 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.187 0.813 36 H 0.203 0.797 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.043 0.957 44 H 0.073 0.927 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.678 2.369 12.466 19.402 hybrid contribution -1.700 0.069 1.044 1.996 sum -16.379 2.438 13.509 21.370 Atomic orbital electron populations 1.22184 0.94020 1.02542 1.03451 1.22001 0.94875 0.95621 0.84203 0.90398 1.22973 0.96192 1.00236 0.96623 1.21027 0.94379 0.97357 0.93396 1.22300 0.86471 0.96530 0.94862 1.48476 1.28361 1.47296 1.08404 1.16824 0.83057 0.80767 0.80462 1.90721 1.25042 1.43984 1.81692 1.21158 0.94154 1.01458 0.95839 1.21358 1.03102 1.01387 0.90881 1.27222 1.04025 1.05475 1.07002 1.80824 1.24401 1.40077 0.92574 1.72652 1.18140 1.15637 1.27443 1.21917 0.96431 0.95731 1.01855 1.20965 0.93567 0.88646 0.94612 1.44303 1.16775 1.07381 1.64253 1.18923 0.96153 0.96499 1.27040 0.89778 1.25262 0.96647 0.97552 0.98038 1.69838 1.30233 1.22767 1.32439 0.86973 0.76105 0.82048 0.83738 1.21727 1.23234 1.19425 1.21282 0.88960 0.91863 0.97895 1.21844 0.98376 0.94902 1.00601 0.89635 0.92028 0.92810 0.89704 0.90654 0.90851 0.89980 0.81255 0.79746 0.92727 0.91354 0.95996 0.91832 0.92827 0.91021 0.95662 0.92689 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.71 37.16 0.32 -1.63 16 2 C 0.14 1.73 3.44 -66.32 -0.23 1.50 16 3 H 0.08 0.98 7.76 -51.93 -0.40 0.57 16 4 C -0.12 -1.52 5.41 -24.87 -0.13 -1.65 16 5 C -0.06 -0.91 0.53 -154.09 -0.08 -0.99 16 6 C 0.12 1.86 3.64 -3.30 -0.01 1.85 16 7 N -0.59 -8.63 3.25 -164.35 -0.53 -9.16 16 8 C 0.60 9.14 7.62 -12.40 -0.09 9.05 16 9 O -0.54 -8.74 14.32 5.30 0.08 -8.67 16 10 C 0.05 0.66 6.61 -84.06 -0.56 0.10 16 11 C -0.13 -1.46 9.98 -40.27 -0.40 -1.86 16 12 C -0.29 -2.43 11.40 29.58 0.34 -2.09 16 13 S 0.47 4.69 23.20 -107.50 -2.49 2.20 16 14 N -0.50 -6.94 8.21 24.85 0.20 -6.74 16 15 C -0.12 -1.90 4.78 -26.94 -0.13 -2.03 16 16 C 0.15 2.85 6.22 -3.65 -0.02 2.83 16 17 N -0.60 -13.97 2.76 -172.43 -0.48 -14.44 16 18 C -0.26 -7.10 10.03 -15.06 -0.15 -7.25 16 19 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 20 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 21 N -0.91 -27.74 13.97 55.49 0.78 -26.96 16 22 Si 0.88 22.23 24.36 -169.99 -4.14 18.09 16 23 H -0.29 -7.06 6.63 56.52 0.37 -6.69 16 24 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 25 H -0.27 -6.66 6.64 56.52 0.38 -6.29 16 26 C 0.13 2.67 3.90 -3.87 -0.02 2.66 16 27 C -0.12 -2.01 4.69 -27.17 -0.13 -2.14 16 28 H 0.08 1.16 5.89 -51.93 -0.31 0.86 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.08 0.95 8.01 -51.92 -0.42 0.54 16 32 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 33 H 0.07 1.20 6.93 -51.93 -0.36 0.84 16 34 H 0.08 1.39 5.58 -51.93 -0.29 1.10 16 35 H 0.17 1.66 7.99 -52.48 -0.42 1.24 16 36 H 0.19 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.05 0.77 7.49 -51.93 -0.39 0.38 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.02 0.43 6.53 -51.93 -0.34 0.09 16 40 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.07 1.69 4.47 -51.93 -0.23 1.46 16 43 H 0.03 0.54 6.44 -51.93 -0.33 0.21 16 44 H 0.05 0.85 8.10 -51.93 -0.42 0.42 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -31.95 350.68 -9.15 -41.10 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.46 Total: 0.38 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.38 Total: -1.07 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.03 Total: -57.30 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.14 Total: 18.09 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -2.49 Total: 2.20 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.95 -9.15 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086928825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.618 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds