Wall clock time and date at job start Tue Mar 31 2020 19:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.31817 * 2 1 4 4 C 1.55021 * 110.35501 * 237.67864 * 2 1 3 5 5 C 1.54514 * 101.53938 * 204.76213 * 4 2 1 6 6 C 1.53706 * 103.64146 * 34.82247 * 5 4 2 7 7 N 1.47178 * 107.11010 * 338.45883 * 6 5 4 8 8 C 1.34779 * 125.65925 * 178.51054 * 7 6 5 9 9 O 1.21574 * 119.99652 * 179.97438 * 8 7 6 10 10 C 1.47687 * 120.00012 * 359.97438 * 8 7 6 11 11 C 1.39487 * 122.10463 * 179.73819 * 10 8 7 12 12 C 1.34990 * 111.68589 * 179.78322 * 11 10 8 13 13 S 1.71764 * 105.45449 * 0.42869 * 12 11 10 14 14 N 1.30610 * 122.10655 * 0.02562 * 10 8 7 15 15 C 1.52274 * 110.20589 * 276.41302 * 5 4 2 16 16 C 1.53312 * 109.42130 * 177.80754 * 15 5 4 17 17 N 1.46927 * 108.70960 * 53.50830 * 16 15 5 18 18 C 1.36933 * 120.56410 * 125.74174 * 17 16 15 19 19 H 1.07996 * 120.00009 * 332.30316 * 18 17 16 20 20 C 1.38813 * 120.00015 * 152.57988 * 18 17 16 21 21 N 1.31620 * 120.00211 * 159.47102 * 20 18 17 22 22 Si 1.86808 * 119.99960 * 339.46938 * 20 18 17 23 23 H 1.48499 * 109.47078 * 93.18267 * 22 20 18 24 24 H 1.48492 * 109.47079 * 213.18352 * 22 20 18 25 25 H 1.48504 * 109.46855 * 333.18388 * 22 20 18 26 26 C 1.46932 * 118.87070 * 306.02076 * 17 16 15 27 27 C 1.52274 * 110.20672 * 153.22096 * 5 4 2 28 28 H 1.08996 * 109.47011 * 299.24593 * 1 2 3 29 29 H 1.09002 * 109.47090 * 59.25084 * 1 2 3 30 30 H 1.09007 * 109.47023 * 179.24935 * 1 2 3 31 31 H 1.09008 * 111.01043 * 86.69966 * 4 2 1 32 32 H 1.09000 * 111.01426 * 322.83096 * 4 2 1 33 33 H 1.09004 * 109.90656 * 97.82423 * 6 5 4 34 34 H 1.09003 * 109.90736 * 218.90099 * 6 5 4 35 35 H 1.08008 * 124.15553 * 359.97438 * 11 10 8 36 36 H 1.08007 * 127.27208 * 180.17134 * 12 11 10 37 37 H 1.09001 * 109.47774 * 57.82015 * 15 5 4 38 38 H 1.08991 * 109.47539 * 297.79286 * 15 5 4 39 39 H 1.08996 * 109.59897 * 293.74329 * 16 15 5 40 40 H 1.08999 * 109.72196 * 173.35116 * 16 15 5 41 41 H 0.97001 * 119.99488 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.59773 * 173.74795 * 26 17 16 43 43 H 1.09001 * 109.60008 * 294.21445 * 26 17 16 44 44 H 1.09002 * 109.48402 * 302.18201 * 27 5 4 45 45 H 1.09003 * 109.47866 * 62.21152 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0221 0.0000 4 6 2.0692 -0.7771 -1.2282 5 6 3.4656 -1.2122 -0.7300 6 6 3.2492 -1.4784 0.7683 7 7 2.0430 -0.7369 1.1700 8 6 1.4979 -0.7319 2.4027 9 8 0.4958 -0.0792 2.6215 10 6 2.1179 -1.5192 3.4875 11 6 1.5941 -1.5414 4.7801 12 6 2.3213 -2.3299 5.5996 13 16 3.5987 -2.9438 4.6292 14 7 3.1945 -2.2342 3.2983 15 6 4.4713 -0.0875 -0.9354 16 6 5.8364 -0.5176 -0.3857 17 7 6.2055 -1.8033 -0.9937 18 6 7.4035 -1.9492 -1.6405 19 1 7.8758 -1.0945 -2.1017 20 6 8.0082 -3.1969 -1.7085 21 7 8.9112 -3.4411 -2.6343 22 14 7.5402 -4.5294 -0.4858 23 1 6.4605 -5.3716 -1.0605 24 1 8.7264 -5.3746 -0.1966 25 1 7.0615 -3.9012 0.7718 26 6 5.2645 -2.9279 -0.9011 27 6 3.9056 -2.4839 -1.4427 28 1 -0.3633 0.5021 0.8966 29 1 -0.3633 0.5254 -0.8832 30 1 -0.3633 -1.0276 -0.0135 31 1 2.1502 -0.1254 -2.0983 32 1 1.4450 -1.6433 -1.4476 33 1 3.1030 -2.5451 0.9384 34 1 4.1107 -1.1268 1.3360 35 1 0.7130 -0.9971 5.0867 36 1 2.1407 -2.5291 6.6456 37 1 4.1319 0.8043 -0.4087 38 1 4.5603 0.1305 -1.9996 39 1 5.7759 -0.6291 0.6968 40 1 6.5863 0.2332 -0.6347 41 1 9.3339 -4.3128 -2.6815 42 1 5.6361 -3.7652 -1.4919 43 1 5.1585 -3.2312 0.1405 44 1 3.1701 -3.2699 -1.2711 45 1 3.9888 -2.2909 -2.5123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086928825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:20 Heat of formation + Delta-G solvation = 25.180645 kcal Electronic energy + Delta-G solvation = -28190.574202 eV Core-core repulsion = 24527.965253 eV Total energy + Delta-G solvation = -3662.608948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.07590 -40.66075 -39.22364 -37.65020 -34.84134 -33.45256 -32.90184 -32.16451 -32.04950 -28.97576 -27.81270 -26.56961 -25.78069 -24.64139 -23.51572 -22.70888 -21.53199 -20.50473 -19.86693 -19.31973 -18.54036 -18.05470 -17.37420 -17.22267 -16.59448 -16.03575 -15.92134 -15.45992 -15.30795 -15.15373 -14.95374 -14.83978 -14.43418 -14.30255 -14.27630 -14.05677 -13.69661 -13.54541 -13.23041 -13.10731 -12.83663 -12.61699 -12.45129 -12.36033 -12.22428 -12.14398 -12.04427 -11.96626 -11.61009 -11.53095 -11.15141 -11.07196 -10.86776 -10.75082 -10.61334 -9.94909 -9.62675 -8.89020 -8.15364 -5.46261 -0.42196 0.51556 0.72586 0.81045 1.29113 1.40666 1.50128 1.88920 2.11460 2.42261 3.06894 3.30131 3.35801 3.46603 3.73288 3.74553 3.84650 4.07901 4.09026 4.26700 4.35165 4.39504 4.42994 4.51752 4.53866 4.56474 4.65328 4.73235 4.75948 4.80681 4.83488 4.84955 4.91683 5.02534 5.08135 5.14324 5.17085 5.21797 5.24824 5.32012 5.37896 5.50609 5.53919 5.89083 6.14523 6.35820 6.93826 6.96800 7.64583 8.05613 9.04734 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011985 B = 0.004793 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.670266 B = 5840.814290 C = 7631.870407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.131 3.869 3 H 0.083 0.917 4 C -0.109 4.109 5 C -0.060 4.060 6 C 0.134 3.866 7 N -0.595 5.595 8 C 0.598 3.402 9 O -0.556 6.556 10 C 0.028 3.972 11 C -0.151 4.151 12 C -0.258 4.258 13 S 0.494 5.506 14 N -0.546 5.546 15 C -0.108 4.108 16 C 0.144 3.856 17 N -0.615 5.615 18 C -0.245 4.245 19 H 0.053 0.947 20 C -0.032 4.032 21 N -0.958 5.958 22 Si 0.942 3.058 23 H -0.276 1.276 24 H -0.311 1.311 25 H -0.262 1.262 26 C 0.123 3.877 27 C -0.109 4.109 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.177 0.823 36 H 0.224 0.776 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.026 0.974 40 H 0.054 0.946 41 H 0.261 0.739 42 H 0.047 0.953 43 H 0.027 0.973 44 H 0.076 0.924 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.379 3.059 14.687 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.029 3.971 3 H 0.101 0.899 4 C -0.147 4.147 5 C -0.061 4.061 6 C 0.011 3.989 7 N -0.327 5.327 8 C 0.383 3.617 9 O -0.435 6.435 10 C -0.145 4.145 11 C -0.183 4.183 12 C -0.407 4.407 13 S 0.649 5.351 14 N -0.382 5.382 15 C -0.147 4.147 16 C 0.019 3.981 17 N -0.340 5.340 18 C -0.374 4.374 19 H 0.070 0.930 20 C -0.227 4.227 21 N -0.604 5.604 22 Si 0.771 3.229 23 H -0.203 1.203 24 H -0.240 1.240 25 H -0.187 1.187 26 C -0.002 4.002 27 C -0.148 4.148 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.194 0.806 36 H 0.241 0.759 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.095 0.905 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.096 2.286 14.155 22.313 hybrid contribution -0.935 0.157 0.603 1.124 sum -18.031 2.443 14.758 23.429 Atomic orbital electron populations 1.22085 0.93233 1.02273 1.03689 1.22162 0.95507 0.95742 0.83699 0.89907 1.22920 0.93950 1.00848 0.96970 1.20958 0.95764 0.96048 0.93286 1.22035 0.86288 0.96013 0.94549 1.48538 1.28051 1.47281 1.08856 1.17159 0.82914 0.80695 0.80929 1.90703 1.25815 1.44867 1.82097 1.21217 0.94742 1.02145 0.96419 1.21475 1.03951 1.02578 0.90344 1.27607 1.01898 1.02989 1.08198 1.80645 1.24190 1.38786 0.91517 1.72444 1.18790 1.16831 1.30162 1.21770 0.94353 0.96811 1.01729 1.21109 0.95457 0.86754 0.94752 1.44408 1.15902 1.09226 1.64426 1.18875 0.97397 0.95339 1.25826 0.92971 1.25840 0.97282 0.99970 0.99573 1.69962 1.32501 1.23474 1.34464 0.85979 0.75737 0.79561 0.81620 1.20294 1.24047 1.18662 1.21287 0.90615 0.90608 0.97704 1.21719 0.96256 0.96552 1.00250 0.91435 0.89646 0.93334 0.87806 0.89788 0.91750 0.91677 0.80560 0.75900 0.90547 0.91473 0.95597 0.92702 0.93029 0.93478 0.95463 0.90531 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.71 71.98 0.63 -2.71 16 2 C 0.13 3.02 3.44 45.49 0.16 3.17 16 3 H 0.08 1.85 7.76 -2.39 -0.02 1.83 16 4 C -0.11 -2.35 5.41 31.80 0.17 -2.18 16 5 C -0.06 -1.66 0.53 -51.91 -0.03 -1.68 16 6 C 0.13 3.92 3.64 86.49 0.32 4.23 16 7 N -0.60 -16.41 3.25 -792.15 -2.57 -18.98 16 8 C 0.60 17.53 7.62 86.74 0.66 18.20 16 9 O -0.56 -17.71 14.32 -3.95 -0.06 -17.77 16 10 C 0.03 0.73 6.61 42.12 0.28 1.01 16 11 C -0.15 -3.00 9.98 21.82 0.22 -2.78 16 12 C -0.26 -3.53 11.40 67.07 0.76 -2.76 16 13 S 0.49 8.88 23.20 -56.49 -1.31 7.56 16 14 N -0.55 -14.39 8.21 -75.28 -0.62 -15.01 16 15 C -0.11 -3.20 4.78 30.46 0.15 -3.06 16 16 C 0.14 5.48 6.22 86.40 0.54 6.02 16 17 N -0.62 -28.42 2.76 -699.46 -1.93 -30.36 16 18 C -0.24 -13.79 10.03 84.03 0.84 -12.95 16 19 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 20 C -0.03 -1.87 5.23 84.86 0.44 -1.42 16 21 N -0.96 -60.17 13.97 21.65 0.30 -59.87 16 22 Si 0.94 46.62 24.36 68.60 1.67 48.29 16 23 H -0.28 -12.94 6.63 99.48 0.66 -12.28 16 24 H -0.31 -15.67 7.11 99.48 0.71 -14.97 16 25 H -0.26 -12.48 6.64 99.48 0.66 -11.82 16 26 C 0.12 5.10 3.90 86.26 0.34 5.44 16 27 C -0.11 -3.49 4.69 30.31 0.14 -3.35 16 28 H 0.07 1.74 5.89 -2.39 -0.01 1.72 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.08 8.14 -2.38 -0.02 1.07 16 31 H 0.10 1.90 8.01 -2.38 -0.02 1.88 16 32 H 0.08 1.72 7.92 -2.39 -0.02 1.70 16 33 H 0.06 2.01 6.93 -2.38 -0.02 1.99 16 34 H 0.07 2.14 5.58 -2.39 -0.01 2.12 16 35 H 0.18 3.15 7.99 -2.91 -0.02 3.13 16 36 H 0.22 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.08 1.97 7.49 -2.39 -0.02 1.95 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.03 0.98 6.53 -2.39 -0.02 0.97 16 40 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 41 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 42 H 0.05 2.19 4.47 -2.39 -0.01 2.18 16 43 H 0.03 1.13 6.44 -2.39 -0.02 1.12 16 44 H 0.08 2.15 8.10 -2.39 -0.02 2.13 16 45 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -71.32 350.68 2.01 -69.31 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.91 Total: 11.64 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.61 Total: 5.17 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -4.82 Total: -124.21 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.06 Total: -17.77 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.67 Total: 48.29 kcal Atomic # 16 Polarization: 8.88 SS G_CDS: -1.31 Total: 7.56 kcal Total: -71.32 2.01 -69.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086928825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.493 kcal (2) G-P(sol) polarization free energy of solvation -71.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds