Wall clock time and date at job start Tue Mar 31 2020 19:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 110.31821 * 2 1 4 4 C 1.55025 * 110.35447 * 237.68058 * 2 1 3 5 5 C 1.54519 * 101.53508 * 204.76206 * 4 2 1 6 6 C 1.53696 * 103.64207 * 34.82278 * 5 4 2 7 7 N 1.47178 * 107.11287 * 338.45269 * 6 5 4 8 8 C 1.34781 * 125.66059 * 178.47168 * 7 6 5 9 9 O 1.21614 * 119.99535 * 180.02562 * 8 7 6 10 10 C 1.47258 * 119.99828 * 0.03121 * 8 7 6 11 11 N 1.30555 * 125.54495 * 359.69047 * 10 8 7 12 12 C 1.30702 * 115.90410 * 179.78277 * 11 10 8 13 13 C 1.34228 * 115.78542 * 0.51952 * 12 11 10 14 14 S 1.71065 * 109.09128 * 359.72326 * 13 12 11 15 15 C 1.52268 * 110.20121 * 276.40869 * 5 4 2 16 16 C 1.53317 * 109.41815 * 177.81166 * 15 5 4 17 17 N 1.46927 * 108.70709 * 53.50965 * 16 15 5 18 18 C 1.36943 * 120.56472 * 125.74550 * 17 16 15 19 19 H 1.08001 * 119.99585 * 332.19412 * 18 17 16 20 20 C 1.38811 * 119.99966 * 152.19398 * 18 17 16 21 21 N 1.31617 * 120.00162 * 342.68424 * 20 18 17 22 22 Si 1.86799 * 119.99877 * 162.68259 * 20 18 17 23 23 H 1.48502 * 109.47345 * 270.00172 * 22 20 18 24 24 H 1.48501 * 109.47062 * 29.99940 * 22 20 18 25 25 H 1.48496 * 109.47511 * 150.00006 * 22 20 18 26 26 C 1.46927 * 118.87372 * 306.01803 * 17 16 15 27 27 C 1.52277 * 110.20140 * 153.22312 * 5 4 2 28 28 H 1.09001 * 109.47051 * 299.25074 * 1 2 3 29 29 H 1.08996 * 109.47633 * 59.25088 * 1 2 3 30 30 H 1.09003 * 109.47426 * 179.25114 * 1 2 3 31 31 H 1.09003 * 111.01382 * 86.70274 * 4 2 1 32 32 H 1.08999 * 111.01231 * 322.82720 * 4 2 1 33 33 H 1.09000 * 109.90910 * 97.83090 * 6 5 4 34 34 H 1.09006 * 109.90708 * 218.89990 * 6 5 4 35 35 H 1.07998 * 122.10532 * 180.21871 * 12 11 10 36 36 H 1.08001 * 125.45734 * 179.72496 * 13 12 11 37 37 H 1.09001 * 109.48489 * 57.83080 * 15 5 4 38 38 H 1.08997 * 109.48378 * 297.79450 * 15 5 4 39 39 H 1.08997 * 109.59641 * 293.73919 * 16 15 5 40 40 H 1.09001 * 109.72609 * 173.35278 * 16 15 5 41 41 H 0.96999 * 120.00142 * 180.02562 * 21 20 18 42 42 H 1.09002 * 109.60145 * 173.75310 * 26 17 16 43 43 H 1.09004 * 109.59783 * 294.21639 * 26 17 16 44 44 H 1.08999 * 109.47934 * 302.17348 * 27 5 4 45 45 H 1.08997 * 109.48249 * 62.21064 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9084 1.0221 0.0000 4 6 2.0691 -0.7771 -1.2283 5 6 3.4656 -1.2122 -0.7300 6 6 3.2491 -1.4784 0.7682 7 7 2.0429 -0.7369 1.1700 8 6 1.4974 -0.7324 2.4025 9 8 0.4946 -0.0801 2.6211 10 6 2.1159 -1.5172 3.4842 11 7 3.1853 -2.2572 3.3691 12 6 3.5743 -2.8713 4.4553 13 6 2.8159 -2.6686 5.5441 14 16 1.5286 -1.6165 5.1414 15 6 4.4712 -0.0875 -0.9355 16 6 5.8363 -0.5175 -0.3858 17 7 6.2053 -1.8032 -0.9938 18 6 7.4035 -1.9492 -1.6407 19 1 7.8749 -1.0947 -2.1033 20 6 8.0120 -3.1953 -1.7017 21 7 7.6408 -4.1501 -0.8754 22 14 9.3576 -3.5171 -2.9568 23 1 8.7513 -4.0273 -4.2128 24 1 10.0861 -2.2537 -3.2364 25 1 10.3051 -4.5262 -2.4190 26 6 5.2645 -2.9279 -0.9011 27 6 3.9055 -2.4839 -1.4428 28 1 -0.3633 0.5022 0.8966 29 1 -0.3634 0.5254 -0.8831 30 1 -0.3634 -1.0276 -0.0134 31 1 2.1502 -0.1254 -2.0983 32 1 1.4449 -1.6433 -1.4476 33 1 3.1030 -2.5451 0.9384 34 1 4.1106 -1.1268 1.3359 35 1 4.4480 -3.5059 4.4743 36 1 2.9904 -3.1006 6.5184 37 1 4.1319 0.8044 -0.4087 38 1 4.5603 0.1306 -1.9997 39 1 5.7758 -0.6289 0.6968 40 1 6.5863 0.2333 -0.6347 41 1 8.0663 -5.0208 -0.9178 42 1 5.6361 -3.7651 -1.4919 43 1 5.1585 -3.2311 0.1405 44 1 3.1701 -3.2698 -1.2711 45 1 3.9887 -2.2909 -2.5123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086949992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:38 Heat of formation + Delta-G solvation = 43.665630 kcal Electronic energy + Delta-G solvation = -27971.561547 eV Core-core repulsion = 24309.754168 eV Total energy + Delta-G solvation = -3661.807379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.72793 -39.53579 -38.35631 -35.96216 -33.11381 -32.23747 -30.88485 -30.19775 -29.89274 -27.24389 -26.55313 -25.36985 -24.21656 -22.82016 -22.13607 -21.18084 -20.62017 -19.08861 -18.55150 -17.75720 -16.73774 -16.60137 -16.04815 -15.47021 -15.03376 -14.84725 -14.51172 -14.18496 -13.82144 -13.72767 -13.58310 -13.37176 -13.24297 -12.98895 -12.74746 -12.50495 -12.09266 -11.83862 -11.72176 -11.62994 -11.47690 -11.23602 -11.08012 -10.86174 -10.72400 -10.41641 -10.23260 -10.19508 -10.07749 -9.88486 -9.80709 -9.55540 -9.49601 -9.30659 -9.07237 -8.49986 -8.42524 -6.62547 -5.76245 -3.18163 0.14732 1.01585 1.57174 2.31141 3.04387 3.18920 3.38696 3.45986 3.46722 4.00106 4.51386 4.67585 4.76671 4.93940 5.00301 5.01751 5.24063 5.32025 5.35807 5.41515 5.44304 5.62001 5.69421 5.79141 5.87984 5.94500 6.00203 6.08933 6.16963 6.17664 6.24057 6.27527 6.37122 6.55489 6.56714 6.64175 6.69647 6.79748 6.88015 7.01895 7.40008 7.42005 7.50921 7.70990 7.82156 8.06513 8.47902 9.24420 9.88077 10.44784 11.31854 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013888 B = 0.003855 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.648210 B = 7262.352726 C = 8794.255767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.136 3.864 3 H 0.079 0.921 4 C -0.124 4.124 5 C -0.059 4.059 6 C 0.121 3.879 7 N -0.585 5.585 8 C 0.610 3.390 9 O -0.538 6.538 10 C -0.013 4.013 11 N -0.410 5.410 12 C 0.033 3.967 13 C -0.281 4.281 14 S 0.226 5.774 15 C -0.119 4.119 16 C 0.145 3.855 17 N -0.590 5.590 18 C -0.251 4.251 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.900 3.100 23 H -0.288 1.288 24 H -0.280 1.280 25 H -0.292 1.292 26 C 0.170 3.830 27 C -0.125 4.125 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.180 0.820 36 H 0.183 0.817 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.019 0.981 40 H 0.053 0.947 41 H 0.253 0.747 42 H 0.086 0.914 43 H 0.021 0.979 44 H 0.050 0.950 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.662 4.663 8.626 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 H 0.096 0.904 4 C -0.162 4.162 5 C -0.060 4.060 6 C -0.001 4.001 7 N -0.317 5.317 8 C 0.395 3.605 9 O -0.417 6.417 10 C -0.288 4.288 11 N -0.127 5.127 12 C -0.123 4.123 13 C -0.422 4.422 14 S 0.481 5.519 15 C -0.158 4.158 16 C 0.018 3.982 17 N -0.312 5.312 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.205 1.205 25 H -0.218 1.218 26 C 0.044 3.956 27 C -0.165 4.165 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.197 0.803 36 H 0.200 0.800 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.039 0.961 44 H 0.069 0.931 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.726 5.263 8.849 17.968 hybrid contribution 1.754 -1.062 -0.467 2.103 sum -12.971 4.201 8.382 16.005 Atomic orbital electron populations 1.22193 0.94057 1.02603 1.03427 1.22031 0.94827 0.95627 0.84183 0.90355 1.22995 0.96698 1.00104 0.96366 1.21021 0.93819 0.97684 0.93429 1.22349 0.86012 0.96722 0.95013 1.48440 1.28415 1.46970 1.07922 1.16301 0.83047 0.80719 0.80449 1.90766 1.24928 1.44193 1.81781 1.27721 0.98310 1.04838 0.97893 1.67041 1.10311 1.06000 1.29383 1.21883 1.02403 1.01659 0.86395 1.26905 1.02010 1.07461 1.05790 1.83911 1.24417 1.38520 1.05089 1.21924 0.96969 0.95631 1.01321 1.20943 0.92951 0.89475 0.94813 1.44002 1.16773 1.07036 1.63408 1.19195 0.97314 0.94947 1.26623 0.91790 1.25006 0.98119 0.97924 0.98489 1.70037 1.44445 1.04131 1.35963 0.86329 0.81533 0.77702 0.81437 1.21517 1.20502 1.21848 1.20727 0.85138 0.91431 0.98265 1.22025 1.00262 0.94344 0.99823 0.89649 0.92020 0.92733 0.89910 0.90698 0.90440 0.89786 0.80276 0.79969 0.93203 0.91888 0.96328 0.92885 0.93730 0.89545 0.96085 0.93146 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 8.71 37.15 0.32 -1.70 16 2 C 0.14 1.81 3.44 -66.33 -0.23 1.58 16 3 H 0.08 1.02 7.76 -51.93 -0.40 0.62 16 4 C -0.12 -1.62 5.41 -24.86 -0.13 -1.75 16 5 C -0.06 -0.93 0.53 -154.09 -0.08 -1.01 16 6 C 0.12 1.97 3.71 -3.31 -0.01 1.96 16 7 N -0.59 -8.92 3.25 -164.52 -0.53 -9.45 16 8 C 0.61 9.60 7.62 -12.59 -0.10 9.51 16 9 O -0.54 -8.99 14.60 5.27 0.08 -8.91 16 10 C -0.01 -0.18 7.33 -14.43 -0.11 -0.29 16 11 N -0.41 -6.14 8.01 -11.51 -0.09 -6.23 16 12 C 0.03 0.41 11.24 -19.45 -0.22 0.19 16 13 C -0.28 -2.72 11.09 29.32 0.33 -2.39 16 14 S 0.23 2.47 23.03 -107.50 -2.48 -0.01 16 15 C -0.12 -1.99 4.78 -26.94 -0.13 -2.11 16 16 C 0.14 2.96 6.23 -3.65 -0.02 2.93 16 17 N -0.59 -14.29 2.99 -172.43 -0.52 -14.80 16 18 C -0.25 -6.76 9.57 -15.06 -0.14 -6.90 16 19 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 20 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 21 N -0.90 -25.71 11.20 55.49 0.62 -25.08 16 22 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.17 3.90 5.02 -3.87 -0.02 3.88 16 27 C -0.13 -2.27 4.69 -27.16 -0.13 -2.40 16 28 H 0.08 1.18 5.89 -51.93 -0.31 0.88 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.98 8.01 -51.93 -0.42 0.56 16 32 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 33 H 0.08 1.36 7.04 -51.93 -0.37 0.99 16 34 H 0.08 1.53 5.70 -51.93 -0.30 1.23 16 35 H 0.18 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.05 0.75 7.49 -51.93 -0.39 0.36 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.40 6.53 -51.93 -0.34 0.06 16 40 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.09 2.26 6.02 -51.93 -0.31 1.94 16 43 H 0.02 0.51 7.47 -51.93 -0.39 0.12 16 44 H 0.05 0.85 8.10 -51.93 -0.42 0.42 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -30.23 359.01 -9.84 -40.07 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.54 Total: 1.10 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -0.76 Total: 1.49 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.52 Total: -55.57 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.48 Total: -0.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.23 -9.84 -40.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086949992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.737 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds