Wall clock time and date at job start Tue Mar 31 2020 19:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.87690 * 2 1 4 4 C 1.54319 * 109.88202 * 238.98148 * 2 1 3 5 5 H 1.09005 * 110.72223 * 336.93838 * 4 2 1 6 6 N 1.46504 * 110.72065 * 100.02550 * 4 2 1 7 7 C 1.34773 * 120.00194 * 204.99938 * 6 4 2 8 8 O 1.21272 * 120.00148 * 0.02562 * 7 6 4 9 9 C 1.50699 * 119.99741 * 180.02562 * 7 6 4 10 10 C 1.50698 * 109.47009 * 180.02562 * 9 7 6 11 11 C 1.33637 * 122.74846 * 84.97826 * 10 9 7 12 12 S 1.76203 * 107.92463 * 179.79976 * 11 10 9 13 13 C 1.70985 * 90.27887 * 0.28413 * 12 11 10 14 14 C 1.50706 * 124.91237 * 179.97438 * 13 12 11 15 15 C 1.52995 * 117.50181 * 8.44331 * 14 13 12 16 16 C 1.52993 * 117.50081 * 299.78096 * 14 13 12 17 17 N 1.29025 * 110.16791 * 359.70778 * 13 12 11 18 18 C 1.55155 * 102.94537 * 218.39547 * 4 2 1 19 19 C 1.54905 * 101.58420 * 35.49992 * 18 4 2 20 20 N 1.47028 * 109.87989 * 121.17783 * 2 1 3 21 21 C 1.36932 * 125.64747 * 298.31581 * 20 2 1 22 22 H 1.08003 * 120.00077 * 0.02562 * 21 20 2 23 23 C 1.38810 * 120.00022 * 179.97438 * 21 20 2 24 24 N 1.31619 * 119.99877 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00026 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47244 * 90.00621 * 25 23 21 27 27 H 1.48504 * 109.46825 * 210.00367 * 25 23 21 28 28 H 1.48501 * 109.47216 * 330.00244 * 25 23 21 29 29 H 1.08994 * 109.47235 * 181.01585 * 1 2 3 30 30 H 1.09003 * 109.47012 * 301.01830 * 1 2 3 31 31 H 1.09002 * 109.47029 * 61.01074 * 1 2 3 32 32 H 0.97001 * 119.99191 * 25.00942 * 6 4 2 33 33 H 1.09000 * 109.47402 * 60.00204 * 9 7 6 34 34 H 1.09003 * 109.47055 * 300.00423 * 9 7 6 35 35 H 1.07997 * 126.04055 * 0.02562 * 11 10 9 36 36 H 1.08998 * 115.54512 * 154.11093 * 14 13 12 37 37 H 1.09000 * 117.49859 * 0.02562 * 15 14 13 38 38 H 1.08999 * 117.49900 * 145.01759 * 15 14 13 39 39 H 1.08998 * 117.50372 * 214.98309 * 16 14 13 40 40 H 1.09006 * 117.50059 * 359.97438 * 16 14 13 41 41 H 1.08999 * 111.00839 * 153.58000 * 18 4 2 42 42 H 1.09003 * 111.00116 * 277.42715 * 18 4 2 43 43 H 1.08993 * 110.37216 * 204.15479 * 19 18 4 44 44 H 1.08999 * 110.45924 * 81.87590 * 19 18 4 45 45 H 0.97006 * 119.99943 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 1.3039 -1.4414 -1.6221 6 7 2.4555 0.1992 -2.2873 7 6 2.4582 -0.1835 -3.5795 8 8 2.1286 -1.3115 -3.8786 9 6 2.8708 0.7906 -4.6528 10 6 2.7865 0.1195 -5.9995 11 6 1.6529 0.0526 -6.7041 12 16 1.9973 -0.8031 -8.2054 13 6 3.6295 -0.9931 -7.7325 14 6 4.6885 -1.6890 -8.5483 15 6 4.3263 -2.0931 -9.9788 16 6 4.4610 -3.1624 -8.8919 17 7 3.8244 -0.4497 -6.5786 18 6 3.2875 -1.5134 -0.6944 19 6 2.8145 -1.8806 0.7342 20 7 2.0300 -0.7158 1.1830 21 6 1.8050 -0.3591 2.4857 22 1 1.2143 0.5164 2.7116 23 6 2.3352 -1.1234 3.5160 24 7 3.0547 -2.1907 3.2407 25 14 2.0277 -0.6373 5.2933 26 1 0.7872 -1.2936 5.7785 27 1 3.1760 -1.0689 6.1303 28 1 1.8757 0.8372 5.3840 29 1 -0.3633 -1.0274 0.0182 30 1 -0.3633 0.5296 0.8807 31 1 -0.3633 0.4981 -0.8989 32 1 2.7189 1.1015 -2.0480 33 1 3.8950 1.1173 -4.4728 34 1 2.2057 1.6540 -4.6352 35 1 0.6957 0.4554 -6.4076 36 1 5.7131 -1.3684 -8.3599 37 1 3.3223 -1.8552 -10.3301 38 1 5.1128 -2.0388 -10.7315 39 1 5.3360 -3.8112 -8.9299 40 1 3.5456 -3.6287 -8.5275 41 1 3.4851 -2.4094 -1.2829 42 1 4.1654 -0.8681 -0.6616 43 1 3.6715 -2.0359 1.3894 44 1 2.1890 -2.7729 0.7109 45 1 3.4255 -2.7246 3.9608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088901398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:36 Heat of formation + Delta-G solvation = 60.653849 kcal Electronic energy + Delta-G solvation = -25945.202441 eV Core-core repulsion = 22284.131726 eV Total energy + Delta-G solvation = -3661.070715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.42840 -39.31473 -37.69867 -37.27789 -33.98588 -32.39595 -31.76011 -30.36436 -29.00819 -27.98062 -25.90159 -24.57862 -23.97986 -22.86565 -21.83418 -20.69039 -20.15014 -19.97753 -19.43336 -17.86618 -16.99872 -16.73611 -16.45555 -15.89574 -15.16678 -14.84046 -14.75977 -14.52887 -14.22682 -13.91127 -13.70230 -13.31448 -13.27839 -12.82578 -12.64603 -12.37036 -12.13452 -12.03524 -11.83756 -11.56036 -11.46958 -11.17674 -11.13476 -10.96116 -10.86521 -10.83083 -10.55281 -10.40591 -10.09670 -9.81011 -9.75121 -9.69295 -9.55592 -9.47819 -8.79715 -8.67797 -8.58360 -6.87689 -5.65491 -3.08510 0.52383 1.16199 1.54193 2.49781 2.81384 3.31302 3.39286 3.43831 3.46152 3.55491 3.70845 4.35810 4.47882 4.50707 4.52086 4.78150 4.93387 5.00922 5.11135 5.18494 5.24779 5.33273 5.41523 5.42313 5.53340 5.56962 5.61523 5.64614 5.67286 5.83678 5.95136 6.12985 6.26372 6.31471 6.36552 6.54848 6.61683 6.73584 6.87267 7.12475 7.52499 7.60947 7.62328 7.74805 7.85685 8.34589 8.44022 9.20366 9.81385 10.45430 11.37762 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028477 B = 0.002136 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.997405 B =13108.351779 C =13665.234780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.136 3.864 5 H 0.093 0.907 6 N -0.715 5.715 7 C 0.516 3.484 8 O -0.536 6.536 9 C -0.070 4.070 10 C 0.095 3.905 11 C -0.245 4.245 12 S 0.116 5.884 13 C 0.081 3.919 14 C -0.085 4.085 15 C -0.170 4.170 16 C -0.159 4.159 17 N -0.460 5.460 18 C -0.153 4.153 19 C 0.153 3.847 20 N -0.595 5.595 21 C -0.220 4.220 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.921 5.921 25 Si 0.914 3.086 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.282 1.282 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.398 0.602 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.176 0.824 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.014 0.986 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 5.274 -26.115 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.031 3.969 5 H 0.111 0.889 6 N -0.366 5.366 7 C 0.301 3.699 8 O -0.412 6.412 9 C -0.113 4.113 10 C -0.037 4.037 11 C -0.384 4.384 12 S 0.372 5.628 13 C -0.197 4.197 14 C -0.107 4.107 15 C -0.208 4.208 16 C -0.198 4.198 17 N -0.174 5.174 18 C -0.192 4.192 19 C 0.028 3.972 20 N -0.320 5.320 21 C -0.348 4.348 22 H 0.095 0.905 23 C -0.207 4.207 24 N -0.569 5.569 25 Si 0.745 3.255 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.233 0.767 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.194 0.806 36 H 0.151 0.849 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.127 0.873 44 H 0.032 0.968 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.470 4.087 -26.730 27.044 hybrid contribution -0.135 1.053 2.029 2.290 sum 0.335 5.140 -24.700 25.232 Atomic orbital electron populations 1.22241 0.97959 1.01399 0.99846 1.20996 0.92551 0.94785 0.86977 0.94654 1.22146 0.97617 0.90783 0.86344 0.88948 1.46029 1.68333 1.16289 1.05963 1.20247 0.77833 0.88543 0.83273 1.90712 1.47595 1.20672 1.82219 1.20220 1.05304 0.97591 0.88150 1.19420 0.87653 0.99699 0.96937 1.26737 1.03761 1.09444 0.98437 1.83722 1.07246 1.52078 1.19787 1.25990 0.96691 1.02004 0.94983 1.20404 0.97170 0.97428 0.95711 1.23152 1.03493 1.03152 0.90980 1.23164 1.04468 0.90514 1.01625 1.65884 1.32829 1.10943 1.07736 1.23387 0.96803 0.99344 0.99703 1.21945 0.97361 0.88369 0.89561 1.44492 1.59265 1.28215 1.00070 1.19017 1.27142 1.08152 0.80510 0.90464 1.24799 1.00392 0.97409 0.98071 1.69802 1.39096 1.17822 1.30183 0.86080 0.77241 0.77699 0.84499 1.21663 1.21673 1.20721 0.92973 0.92738 0.94386 0.76745 0.87009 0.87192 0.80614 0.84911 0.88371 0.87256 0.87364 0.88116 0.92118 0.91960 0.87346 0.96797 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.13 37.16 0.34 -2.54 16 2 C 0.16 3.11 3.48 -66.95 -0.23 2.87 16 3 H 0.04 0.68 7.71 -51.93 -0.40 0.28 16 4 C 0.14 2.50 2.85 -66.10 -0.19 2.31 16 5 H 0.09 1.85 7.25 -51.93 -0.38 1.48 16 6 N -0.72 -10.41 5.18 -52.03 -0.27 -10.68 16 7 C 0.52 7.74 7.82 -10.99 -0.09 7.65 16 8 O -0.54 -10.36 15.68 5.56 0.09 -10.27 16 9 C -0.07 -0.77 6.11 -29.04 -0.18 -0.95 16 10 C 0.09 1.22 5.23 -84.23 -0.44 0.78 16 11 C -0.24 -2.75 11.14 29.12 0.32 -2.43 16 12 S 0.12 1.14 21.94 -107.50 -2.36 -1.21 16 13 C 0.08 0.94 7.04 -13.45 -0.09 0.85 16 14 C -0.09 -0.75 6.33 -91.77 -0.58 -1.33 16 15 C -0.17 -1.03 10.02 -26.70 -0.27 -1.29 16 16 C -0.16 -1.15 10.24 -26.70 -0.27 -1.42 16 17 N -0.46 -6.40 10.53 -8.05 -0.08 -6.48 16 18 C -0.15 -3.10 6.77 -24.59 -0.17 -3.27 16 19 C 0.15 3.77 5.89 -2.53 -0.01 3.75 16 20 N -0.60 -14.87 3.13 -162.58 -0.51 -15.38 16 21 C -0.22 -5.98 9.89 -15.06 -0.15 -6.13 16 22 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 23 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 24 N -0.92 -26.77 10.09 55.49 0.56 -26.21 16 25 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.40 4.65 8.37 -40.82 -0.34 4.31 16 33 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.18 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.10 0.57 7.22 -51.93 -0.38 0.20 16 38 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.11 2.99 5.87 -51.93 -0.31 2.68 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -33.85 383.07 -10.76 -44.61 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -6.84 Total: 4.51 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.10 Total: -1.56 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.30 Total: -58.75 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.36 Total: -1.21 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.85 -10.76 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088901398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.268 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds