Wall clock time and date at job start Tue Mar 31 2020 19:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.87690 * 2 1 4 4 C 1.54319 * 109.88202 * 238.98148 * 2 1 3 5 5 H 1.09005 * 110.72223 * 336.93838 * 4 2 1 6 6 N 1.46504 * 110.72065 * 100.02550 * 4 2 1 7 7 C 1.34773 * 120.00194 * 204.99938 * 6 4 2 8 8 O 1.21272 * 120.00148 * 0.02562 * 7 6 4 9 9 C 1.50699 * 119.99741 * 180.02562 * 7 6 4 10 10 C 1.50698 * 109.47009 * 180.02562 * 9 7 6 11 11 C 1.33637 * 122.74846 * 84.97826 * 10 9 7 12 12 S 1.76203 * 107.92463 * 179.79976 * 11 10 9 13 13 C 1.70985 * 90.27887 * 0.28413 * 12 11 10 14 14 C 1.50706 * 124.91237 * 179.97438 * 13 12 11 15 15 C 1.52995 * 117.50181 * 8.44331 * 14 13 12 16 16 C 1.52993 * 117.50081 * 299.78096 * 14 13 12 17 17 N 1.29025 * 110.16791 * 359.70778 * 13 12 11 18 18 C 1.55155 * 102.94537 * 218.39547 * 4 2 1 19 19 C 1.54905 * 101.58420 * 35.49992 * 18 4 2 20 20 N 1.47028 * 109.87989 * 121.17783 * 2 1 3 21 21 C 1.36932 * 125.64747 * 298.31581 * 20 2 1 22 22 H 1.08003 * 120.00077 * 0.02562 * 21 20 2 23 23 C 1.38810 * 120.00022 * 179.97438 * 21 20 2 24 24 N 1.31619 * 119.99877 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00026 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47244 * 90.00621 * 25 23 21 27 27 H 1.48504 * 109.46825 * 210.00367 * 25 23 21 28 28 H 1.48501 * 109.47216 * 330.00244 * 25 23 21 29 29 H 1.08994 * 109.47235 * 181.01585 * 1 2 3 30 30 H 1.09003 * 109.47012 * 301.01830 * 1 2 3 31 31 H 1.09002 * 109.47029 * 61.01074 * 1 2 3 32 32 H 0.97001 * 119.99191 * 25.00942 * 6 4 2 33 33 H 1.09000 * 109.47402 * 60.00204 * 9 7 6 34 34 H 1.09003 * 109.47055 * 300.00423 * 9 7 6 35 35 H 1.07997 * 126.04055 * 0.02562 * 11 10 9 36 36 H 1.08998 * 115.54512 * 154.11093 * 14 13 12 37 37 H 1.09000 * 117.49859 * 0.02562 * 15 14 13 38 38 H 1.08999 * 117.49900 * 145.01759 * 15 14 13 39 39 H 1.08998 * 117.50372 * 214.98309 * 16 14 13 40 40 H 1.09006 * 117.50059 * 359.97438 * 16 14 13 41 41 H 1.08999 * 111.00839 * 153.58000 * 18 4 2 42 42 H 1.09003 * 111.00116 * 277.42715 * 18 4 2 43 43 H 1.08993 * 110.37216 * 204.15479 * 19 18 4 44 44 H 1.08999 * 110.45924 * 81.87590 * 19 18 4 45 45 H 0.97006 * 119.99943 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 1.3039 -1.4414 -1.6221 6 7 2.4555 0.1992 -2.2873 7 6 2.4582 -0.1835 -3.5795 8 8 2.1286 -1.3115 -3.8786 9 6 2.8708 0.7906 -4.6528 10 6 2.7865 0.1195 -5.9995 11 6 1.6529 0.0526 -6.7041 12 16 1.9973 -0.8031 -8.2054 13 6 3.6295 -0.9931 -7.7325 14 6 4.6885 -1.6890 -8.5483 15 6 4.3263 -2.0931 -9.9788 16 6 4.4610 -3.1624 -8.8919 17 7 3.8244 -0.4497 -6.5786 18 6 3.2875 -1.5134 -0.6944 19 6 2.8145 -1.8806 0.7342 20 7 2.0300 -0.7158 1.1830 21 6 1.8050 -0.3591 2.4857 22 1 1.2143 0.5164 2.7116 23 6 2.3352 -1.1234 3.5160 24 7 3.0547 -2.1907 3.2407 25 14 2.0277 -0.6373 5.2933 26 1 0.7872 -1.2936 5.7785 27 1 3.1760 -1.0689 6.1303 28 1 1.8757 0.8372 5.3840 29 1 -0.3633 -1.0274 0.0182 30 1 -0.3633 0.5296 0.8807 31 1 -0.3633 0.4981 -0.8989 32 1 2.7189 1.1015 -2.0480 33 1 3.8950 1.1173 -4.4728 34 1 2.2057 1.6540 -4.6352 35 1 0.6957 0.4554 -6.4076 36 1 5.7131 -1.3684 -8.3599 37 1 3.3223 -1.8552 -10.3301 38 1 5.1128 -2.0388 -10.7315 39 1 5.3360 -3.8112 -8.9299 40 1 3.5456 -3.6287 -8.5275 41 1 3.4851 -2.4094 -1.2829 42 1 4.1654 -0.8681 -0.6616 43 1 3.6715 -2.0359 1.3894 44 1 2.1890 -2.7729 0.7109 45 1 3.4255 -2.7246 3.9608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088901398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:35 Heat of formation + Delta-G solvation = 38.870122 kcal Electronic energy + Delta-G solvation = -25946.147054 eV Core-core repulsion = 22284.131726 eV Total energy + Delta-G solvation = -3662.015328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42728 -40.50567 -39.11607 -38.06529 -35.58300 -33.93593 -32.94783 -32.05750 -30.60255 -29.14177 -26.79533 -26.20972 -25.75936 -23.37553 -22.79094 -22.07155 -21.58074 -21.33571 -20.56609 -18.75558 -18.65085 -18.13740 -17.37462 -17.13143 -16.65760 -16.06174 -15.87144 -15.77306 -15.42840 -15.33537 -14.88474 -14.58711 -14.32185 -14.17871 -14.00990 -13.82281 -13.33740 -13.23692 -13.04638 -12.93482 -12.75016 -12.61227 -12.57491 -12.25627 -12.23310 -12.09238 -11.97647 -11.81436 -11.57939 -11.50991 -11.45101 -10.95199 -10.73666 -10.64218 -10.30612 -10.00736 -9.59408 -8.90550 -7.74875 -5.20129 -0.28619 0.39022 0.73261 1.48013 1.49784 1.57907 1.59558 1.65371 2.28419 2.53058 2.79868 3.04477 3.35678 3.56633 3.69561 3.79830 3.86394 3.92140 3.96398 4.01149 4.16419 4.21568 4.24263 4.40508 4.49125 4.50894 4.62263 4.67382 4.70512 4.75209 4.79977 4.91067 4.94274 5.02947 5.04388 5.12724 5.15402 5.17071 5.36685 5.49498 5.58706 5.63628 5.79185 6.29838 6.59501 6.78897 7.10602 7.28611 7.78680 8.42531 9.27192 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028477 B = 0.002136 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.997405 B =13108.351779 C =13665.234780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 H 0.056 0.944 4 C 0.154 3.846 5 H 0.077 0.923 6 N -0.703 5.703 7 C 0.518 3.482 8 O -0.582 6.582 9 C -0.060 4.060 10 C 0.069 3.931 11 C -0.256 4.256 12 S 0.154 5.846 13 C 0.065 3.935 14 C -0.110 4.110 15 C -0.147 4.147 16 C -0.162 4.162 17 N -0.498 5.498 18 C -0.139 4.139 19 C 0.158 3.842 20 N -0.614 5.614 21 C -0.225 4.225 22 H 0.087 0.913 23 C -0.072 4.072 24 N -0.953 5.953 25 Si 0.979 3.021 26 H -0.291 1.291 27 H -0.297 1.297 28 H -0.265 1.265 29 H 0.032 0.968 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.417 0.583 33 H 0.125 0.875 34 H 0.151 0.849 35 H 0.195 0.805 36 H 0.133 0.867 37 H 0.101 0.899 38 H 0.132 0.868 39 H 0.122 0.878 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.077 0.923 44 H -0.018 1.018 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 7.473 -27.994 28.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.044 3.956 3 H 0.074 0.926 4 C 0.048 3.952 5 H 0.095 0.905 6 N -0.355 5.355 7 C 0.305 3.695 8 O -0.461 6.461 9 C -0.102 4.102 10 C -0.063 4.063 11 C -0.395 4.395 12 S 0.410 5.590 13 C -0.212 4.212 14 C -0.132 4.132 15 C -0.184 4.184 16 C -0.201 4.201 17 N -0.213 5.213 18 C -0.179 4.179 19 C 0.032 3.968 20 N -0.339 5.339 21 C -0.354 4.354 22 H 0.105 0.895 23 C -0.264 4.264 24 N -0.603 5.603 25 Si 0.808 3.192 26 H -0.218 1.218 27 H -0.223 1.223 28 H -0.190 1.190 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.254 0.746 33 H 0.143 0.857 34 H 0.168 0.832 35 H 0.213 0.787 36 H 0.151 0.849 37 H 0.120 0.880 38 H 0.151 0.849 39 H 0.140 0.860 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.000 1.000 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.124 6.352 -28.644 29.340 hybrid contribution 0.019 0.336 2.506 2.529 sum -0.105 6.688 -26.138 26.980 Atomic orbital electron populations 1.22126 0.96544 1.00569 1.01318 1.21214 0.93524 0.95179 0.85658 0.92617 1.21671 0.95913 0.90908 0.86729 0.90536 1.45803 1.68074 1.16417 1.05175 1.20948 0.76400 0.88502 0.83644 1.90699 1.49613 1.22964 1.82871 1.20268 1.06905 0.97264 0.85751 1.19733 0.88066 1.00635 0.97858 1.27102 1.04227 1.09262 0.98957 1.83493 1.05765 1.51049 1.18733 1.26500 0.98218 1.01613 0.94865 1.20563 0.96736 0.98326 0.97538 1.23270 1.04366 1.00764 0.90047 1.23240 1.04602 0.90084 1.02180 1.65922 1.34040 1.12382 1.08971 1.23184 0.97954 0.99811 0.96930 1.21646 0.95698 0.87817 0.91600 1.44734 1.59725 1.28500 1.00963 1.19407 1.26240 1.08044 0.81667 0.89496 1.25648 1.00921 0.97781 1.02073 1.70055 1.40463 1.19012 1.30733 0.85055 0.76444 0.78089 0.79611 1.21788 1.22348 1.18988 0.94896 0.93278 0.90887 0.74595 0.85704 0.83169 0.78743 0.84888 0.88046 0.84941 0.85963 0.89214 0.92300 0.91072 0.90504 0.99965 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.13 71.98 0.66 -4.53 16 2 C 0.15 5.83 3.48 45.34 0.16 5.99 16 3 H 0.06 1.97 7.71 -2.39 -0.02 1.96 16 4 C 0.15 5.52 2.85 46.18 0.13 5.65 16 5 H 0.08 3.05 7.25 -2.38 -0.02 3.03 16 6 N -0.70 -18.80 5.18 -436.93 -2.26 -21.06 16 7 C 0.52 14.56 7.82 87.66 0.69 15.25 16 8 O -0.58 -22.20 15.68 -3.01 -0.05 -22.24 16 9 C -0.06 -1.17 6.11 29.10 0.18 -0.99 16 10 C 0.07 1.67 5.23 41.52 0.22 1.89 16 11 C -0.26 -5.33 11.14 66.78 0.74 -4.58 16 12 S 0.15 2.81 21.94 -56.49 -1.24 1.57 16 13 C 0.07 1.46 7.04 88.52 0.62 2.09 16 14 C -0.11 -1.83 6.33 -11.54 -0.07 -1.90 16 15 C -0.15 -1.48 10.02 30.62 0.31 -1.17 16 16 C -0.16 -2.17 10.24 30.62 0.31 -1.86 16 17 N -0.50 -13.57 10.53 -179.39 -1.89 -15.46 16 18 C -0.14 -5.70 6.77 31.98 0.22 -5.48 16 19 C 0.16 8.09 5.89 86.85 0.51 8.60 16 20 N -0.61 -30.85 3.13 -668.27 -2.09 -32.94 16 21 C -0.22 -12.22 9.89 84.03 0.83 -11.38 16 22 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 23 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 24 N -0.95 -57.31 10.09 21.65 0.22 -57.09 16 25 Si 0.98 45.45 29.55 68.60 2.03 47.48 16 26 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 28 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.42 8.28 8.37 -92.71 -0.78 7.50 16 33 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.20 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.10 0.96 7.22 -2.39 -0.02 0.94 16 38 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.08 4.44 5.87 -2.39 -0.01 4.43 16 44 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 45 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 Total: -1.00 -76.10 383.07 0.91 -75.19 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.23 Total: 20.59 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 5.97 Total: 3.97 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -6.02 Total: -126.55 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.05 Total: -22.24 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.24 Total: 1.57 kcal Total: -76.10 0.91 -75.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088901398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.060 kcal (2) G-P(sol) polarization free energy of solvation -76.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds