Wall clock time and date at job start Tue Mar 31 2020 19:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64412 * 2 1 4 4 C 1.54322 * 110.71873 * 236.85669 * 2 1 3 5 5 N 1.47016 * 107.27584 * 219.44305 * 4 2 1 6 6 C 1.36934 * 125.65257 * 178.90450 * 5 4 2 7 7 H 1.08001 * 120.00082 * 180.02562 * 6 5 4 8 8 C 1.38818 * 120.00056 * 0.02904 * 6 5 4 9 9 N 1.31621 * 119.99528 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00255 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47048 * 89.99818 * 10 8 6 12 12 H 1.48496 * 109.47094 * 209.99851 * 10 8 6 13 13 H 1.48503 * 109.47024 * 330.00057 * 10 8 6 14 14 C 1.47425 * 108.70144 * 358.94568 * 5 4 2 15 15 C 1.54913 * 104.83172 * 24.12623 * 14 5 4 16 16 H 1.08993 * 111.00353 * 81.06953 * 15 14 5 17 17 C 1.53005 * 111.00185 * 204.91813 * 15 14 5 18 18 N 1.46490 * 109.47021 * 287.19367 * 17 15 14 19 19 C 1.34778 * 120.00109 * 179.97438 * 18 17 15 20 20 O 1.21685 * 119.99710 * 0.02562 * 19 18 17 21 21 C 1.46684 * 120.00587 * 179.97438 * 19 18 17 22 22 S 1.76214 * 126.12685 * 359.69663 * 21 19 18 23 23 C 1.70956 * 90.31408 * 179.97438 * 22 21 19 24 24 N 1.29427 * 110.38612 * 0.34958 * 23 22 21 25 25 C 1.30944 * 117.36717 * 359.72157 * 24 23 22 26 26 C 1.50708 * 122.90150 * 180.02562 * 25 24 23 27 27 C 1.52992 * 117.49870 * 8.58136 * 26 25 24 28 28 C 1.52994 * 117.49758 * 299.95843 * 26 25 24 29 29 H 1.08994 * 109.47357 * 181.68934 * 1 2 3 30 30 H 1.08998 * 109.46865 * 301.68696 * 1 2 3 31 31 H 1.08994 * 109.46919 * 61.68521 * 1 2 3 32 32 H 1.09005 * 109.88278 * 338.86758 * 4 2 1 33 33 H 1.09005 * 109.88137 * 99.87244 * 4 2 1 34 34 H 0.97004 * 119.99644 * 179.97438 * 9 8 6 35 35 H 1.08996 * 110.36900 * 142.96779 * 14 5 4 36 36 H 1.08998 * 110.36632 * 265.28801 * 14 5 4 37 37 H 1.09004 * 109.47149 * 47.19798 * 17 15 14 38 38 H 1.08997 * 109.46866 * 167.19429 * 17 15 14 39 39 H 0.96998 * 120.00572 * 0.02562 * 18 17 15 40 40 H 1.07997 * 124.80439 * 180.02562 * 23 22 21 41 41 H 1.08998 * 115.54433 * 154.29289 * 26 25 24 42 42 H 1.08998 * 117.50549 * 0.02562 * 27 26 25 43 43 H 1.09005 * 117.49814 * 145.02385 * 27 26 25 44 44 H 1.08997 * 117.50150 * 214.98311 * 28 26 25 45 45 H 1.09003 * 117.50064 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 3.2445 -1.5495 -0.7417 6 6 4.0034 -2.3955 -1.5056 7 1 4.8454 -2.9103 -1.0670 8 6 3.6905 -2.5915 -2.8438 9 7 2.6640 -1.9644 -3.3782 10 14 4.7261 -3.7449 -3.8860 11 1 4.1655 -5.1180 -3.8105 12 1 4.7142 -3.2822 -5.2970 13 1 6.1218 -3.7516 -3.3789 14 6 3.4633 -1.2511 0.6853 15 6 2.0790 -0.7976 1.2124 16 1 1.4452 -1.6561 1.4346 17 6 2.2279 0.1037 2.4398 18 7 2.6329 -0.7042 3.5926 19 6 2.8261 -0.1190 4.7912 20 8 2.6637 1.0806 4.9158 21 6 3.2311 -0.9280 5.9458 22 16 3.5020 -2.6692 5.9507 23 6 3.8967 -2.6126 7.6131 24 7 3.8087 -1.3998 8.0564 25 6 3.4574 -0.4710 7.2029 26 6 3.3171 0.9803 7.5841 27 6 3.7941 1.3939 8.9777 28 6 2.2969 1.3303 8.6691 29 1 -0.3634 -1.0271 0.0303 30 1 -0.3633 0.5398 0.8745 31 1 -0.3633 0.4874 -0.9047 32 1 1.3129 -1.4731 -1.5801 33 1 2.3716 -0.0991 -1.9990 34 1 2.4455 -2.1011 -4.3133 35 1 3.7961 -2.1448 1.2131 36 1 4.1932 -0.4494 0.7976 37 1 2.9855 0.8625 2.2436 38 1 1.2750 0.5883 2.6524 39 1 2.7627 -1.6603 3.4933 40 1 4.1746 -3.4686 8.2101 41 1 3.4537 1.6948 6.7723 42 1 4.2097 0.6166 9.6188 43 1 4.2447 2.3809 9.0831 44 1 1.7625 2.2752 8.5715 45 1 1.7268 0.5109 9.1070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093035499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:55 Heat of formation + Delta-G solvation = 55.929582 kcal Electronic energy + Delta-G solvation = -26156.578283 eV Core-core repulsion = 22495.302709 eV Total energy + Delta-G solvation = -3661.275574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.73115 -39.37597 -37.96862 -36.68174 -34.75639 -32.99763 -31.17890 -30.75296 -29.27786 -26.61945 -25.88775 -25.03552 -23.35546 -22.77756 -22.49871 -21.56985 -20.19668 -19.79191 -19.08095 -18.26275 -17.21492 -16.78923 -16.11845 -15.85425 -15.41496 -15.21799 -14.66242 -14.58760 -14.44165 -14.14309 -13.81665 -13.66973 -13.19140 -12.95109 -12.57928 -12.54584 -11.88647 -11.85411 -11.68934 -11.68518 -11.43796 -11.24000 -10.99445 -10.84140 -10.79662 -10.62042 -10.32304 -10.17645 -10.02943 -9.99048 -9.93117 -9.84994 -9.71795 -9.57630 -9.14196 -8.93322 -8.62255 -6.85373 -5.73269 -3.06862 -0.04653 0.88734 1.25906 2.13544 2.98281 3.04244 3.38019 3.43206 3.45232 3.70744 3.87955 4.40388 4.47028 4.64253 4.71984 4.85344 4.96029 5.06492 5.16094 5.22222 5.29387 5.48135 5.50609 5.53438 5.60887 5.71857 5.79920 5.83206 5.96954 5.98619 6.03082 6.10384 6.15887 6.24721 6.34482 6.46060 6.53651 6.59695 6.72351 6.90517 7.23809 7.39600 7.54703 7.62052 7.81887 8.03997 8.23932 9.20069 9.80304 10.46356 11.38311 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.002583 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.460151 B =10839.348049 C =11908.675246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.183 3.817 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.921 5.921 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.141 3.859 15 C -0.114 4.114 16 H 0.081 0.919 17 C 0.133 3.867 18 N -0.717 5.717 19 C 0.595 3.405 20 O -0.524 6.524 21 C -0.286 4.286 22 S 0.171 5.829 23 C 0.034 3.966 24 N -0.473 5.473 25 C 0.172 3.828 26 C -0.097 4.097 27 C -0.164 4.164 28 C -0.157 4.157 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.252 0.748 35 H 0.035 0.965 36 H 0.020 0.980 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.399 0.601 40 H 0.206 0.794 41 H 0.144 0.856 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.580 1.328 22.527 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.087 0.913 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.569 5.569 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.134 4.134 16 H 0.099 0.901 17 C 0.010 3.990 18 N -0.368 5.368 19 C 0.380 3.620 20 O -0.402 6.402 21 C -0.411 4.411 22 S 0.426 5.574 23 C -0.262 4.262 24 N -0.186 5.186 25 C 0.035 3.965 26 C -0.118 4.118 27 C -0.201 4.201 28 C -0.195 4.195 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.037 0.963 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.233 0.767 40 H 0.223 0.777 41 H 0.162 0.838 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.611 1.312 22.157 22.254 hybrid contribution 0.591 -0.517 -0.452 0.906 sum -1.020 0.795 21.705 21.743 Atomic orbital electron populations 1.21694 0.95272 1.01477 1.00749 1.22437 0.95184 0.99122 0.96212 0.91336 1.21220 0.89085 0.93123 0.90707 1.44453 1.32637 1.51526 1.04579 1.19047 1.07648 1.17743 0.91274 0.90503 1.24804 0.98439 1.00312 0.96900 1.69963 1.28773 1.45452 1.12685 0.86125 0.79524 0.80321 0.79826 1.21619 1.21666 1.20717 1.21591 0.92961 0.97061 0.86900 1.22702 0.99543 0.98098 0.93042 0.90099 1.21480 1.00417 0.93682 0.83390 1.45990 1.69602 1.12078 1.09119 1.16634 0.77405 0.86623 0.81346 1.90776 1.51706 1.13759 1.83998 1.25497 1.18576 0.97077 0.99908 1.84132 1.59969 1.03028 1.10256 1.28685 1.01961 0.98569 0.96967 1.65977 1.16670 0.99582 1.36409 1.19732 0.94676 0.95468 0.86650 1.20909 1.06542 0.89879 0.94423 1.22987 0.96936 1.02871 0.97302 1.22913 0.92430 1.03085 1.01055 0.92778 0.93665 0.92640 0.93285 0.93997 0.93748 0.94680 0.96276 0.90965 0.91211 0.76662 0.77702 0.83845 0.87835 0.88418 0.88107 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.13 37.16 0.34 -1.70 16 2 C -0.11 -1.94 3.01 -88.78 -0.27 -2.21 16 3 H 0.07 1.17 8.04 -51.93 -0.42 0.76 16 4 C 0.18 4.32 4.97 -3.07 -0.02 4.30 16 5 N -0.61 -15.09 3.39 -170.07 -0.58 -15.67 16 6 C -0.23 -6.28 10.28 -15.06 -0.15 -6.43 16 7 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -26.75 10.31 55.49 0.57 -26.18 16 10 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.14 2.78 6.65 -2.53 -0.02 2.76 16 15 C -0.11 -1.84 2.50 -88.47 -0.22 -2.06 16 16 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 17 C 0.13 1.88 5.13 -4.04 -0.02 1.86 16 18 N -0.72 -9.30 5.50 -61.62 -0.34 -9.64 16 19 C 0.60 8.29 7.78 -12.85 -0.10 8.19 16 20 O -0.52 -8.54 14.32 5.20 0.07 -8.47 16 21 C -0.29 -3.46 6.48 -37.10 -0.24 -3.70 16 22 S 0.17 1.47 22.35 -107.50 -2.40 -0.94 16 23 C 0.03 0.27 12.22 51.75 0.63 0.90 16 24 N -0.47 -5.12 9.80 -11.53 -0.11 -5.23 16 25 C 0.17 2.09 6.42 -83.89 -0.54 1.55 16 26 C -0.10 -1.13 5.44 -91.78 -0.50 -1.63 16 27 C -0.16 -1.54 10.08 -26.74 -0.27 -1.81 16 28 C -0.16 -1.53 10.23 -26.74 -0.27 -1.80 16 29 H 0.05 0.84 8.13 -51.93 -0.42 0.41 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 1.28 7.06 -51.93 -0.37 0.91 16 33 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 34 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 37 H 0.07 1.09 7.96 -51.93 -0.41 0.67 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.40 4.60 7.66 -40.82 -0.31 4.29 16 40 H 0.21 0.83 8.06 -52.49 -0.42 0.40 16 41 H 0.14 1.88 6.17 -51.93 -0.32 1.56 16 42 H 0.10 1.00 7.74 -51.93 -0.40 0.60 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -32.15 379.77 -10.63 -42.77 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.80 Total: 2.89 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -1.74 Total: -2.11 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.46 Total: -56.72 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.07 Total: -8.47 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.40 Total: -0.94 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.15 -10.63 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093035499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.703 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds