Wall clock time and date at job start Tue Mar 31 2020 19:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64412 * 2 1 4 4 C 1.54322 * 110.71873 * 236.85669 * 2 1 3 5 5 N 1.47016 * 107.27584 * 219.44305 * 4 2 1 6 6 C 1.36934 * 125.65257 * 178.90450 * 5 4 2 7 7 H 1.08001 * 120.00082 * 180.02562 * 6 5 4 8 8 C 1.38818 * 120.00056 * 0.02904 * 6 5 4 9 9 N 1.31621 * 119.99528 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00255 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47048 * 89.99818 * 10 8 6 12 12 H 1.48496 * 109.47094 * 209.99851 * 10 8 6 13 13 H 1.48503 * 109.47024 * 330.00057 * 10 8 6 14 14 C 1.47425 * 108.70144 * 358.94568 * 5 4 2 15 15 C 1.54913 * 104.83172 * 24.12623 * 14 5 4 16 16 H 1.08993 * 111.00353 * 81.06953 * 15 14 5 17 17 C 1.53005 * 111.00185 * 204.91813 * 15 14 5 18 18 N 1.46490 * 109.47021 * 287.19367 * 17 15 14 19 19 C 1.34778 * 120.00109 * 179.97438 * 18 17 15 20 20 O 1.21685 * 119.99710 * 0.02562 * 19 18 17 21 21 C 1.46684 * 120.00587 * 179.97438 * 19 18 17 22 22 S 1.76214 * 126.12685 * 359.69663 * 21 19 18 23 23 C 1.70956 * 90.31408 * 179.97438 * 22 21 19 24 24 N 1.29427 * 110.38612 * 0.34958 * 23 22 21 25 25 C 1.30944 * 117.36717 * 359.72157 * 24 23 22 26 26 C 1.50708 * 122.90150 * 180.02562 * 25 24 23 27 27 C 1.52992 * 117.49870 * 8.58136 * 26 25 24 28 28 C 1.52994 * 117.49758 * 299.95843 * 26 25 24 29 29 H 1.08994 * 109.47357 * 181.68934 * 1 2 3 30 30 H 1.08998 * 109.46865 * 301.68696 * 1 2 3 31 31 H 1.08994 * 109.46919 * 61.68521 * 1 2 3 32 32 H 1.09005 * 109.88278 * 338.86758 * 4 2 1 33 33 H 1.09005 * 109.88137 * 99.87244 * 4 2 1 34 34 H 0.97004 * 119.99644 * 179.97438 * 9 8 6 35 35 H 1.08996 * 110.36900 * 142.96779 * 14 5 4 36 36 H 1.08998 * 110.36632 * 265.28801 * 14 5 4 37 37 H 1.09004 * 109.47149 * 47.19798 * 17 15 14 38 38 H 1.08997 * 109.46866 * 167.19429 * 17 15 14 39 39 H 0.96998 * 120.00572 * 0.02562 * 18 17 15 40 40 H 1.07997 * 124.80439 * 180.02562 * 23 22 21 41 41 H 1.08998 * 115.54433 * 154.29289 * 26 25 24 42 42 H 1.08998 * 117.50549 * 0.02562 * 27 26 25 43 43 H 1.09005 * 117.49814 * 145.02385 * 27 26 25 44 44 H 1.08997 * 117.50150 * 214.98311 * 28 26 25 45 45 H 1.09003 * 117.50064 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 3.2445 -1.5495 -0.7417 6 6 4.0034 -2.3955 -1.5056 7 1 4.8454 -2.9103 -1.0670 8 6 3.6905 -2.5915 -2.8438 9 7 2.6640 -1.9644 -3.3782 10 14 4.7261 -3.7449 -3.8860 11 1 4.1655 -5.1180 -3.8105 12 1 4.7142 -3.2822 -5.2970 13 1 6.1218 -3.7516 -3.3789 14 6 3.4633 -1.2511 0.6853 15 6 2.0790 -0.7976 1.2124 16 1 1.4452 -1.6561 1.4346 17 6 2.2279 0.1037 2.4398 18 7 2.6329 -0.7042 3.5926 19 6 2.8261 -0.1190 4.7912 20 8 2.6637 1.0806 4.9158 21 6 3.2311 -0.9280 5.9458 22 16 3.5020 -2.6692 5.9507 23 6 3.8967 -2.6126 7.6131 24 7 3.8087 -1.3998 8.0564 25 6 3.4574 -0.4710 7.2029 26 6 3.3171 0.9803 7.5841 27 6 3.7941 1.3939 8.9777 28 6 2.2969 1.3303 8.6691 29 1 -0.3634 -1.0271 0.0303 30 1 -0.3633 0.5398 0.8745 31 1 -0.3633 0.4874 -0.9047 32 1 1.3129 -1.4731 -1.5801 33 1 2.3716 -0.0991 -1.9990 34 1 2.4455 -2.1011 -4.3133 35 1 3.7961 -2.1448 1.2131 36 1 4.1932 -0.4494 0.7976 37 1 2.9855 0.8625 2.2436 38 1 1.2750 0.5883 2.6524 39 1 2.7627 -1.6603 3.4933 40 1 4.1746 -3.4686 8.2101 41 1 3.4537 1.6948 6.7723 42 1 4.2097 0.6166 9.6188 43 1 4.2447 2.3809 9.0831 44 1 1.7625 2.2752 8.5715 45 1 1.7268 0.5109 9.1070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093035499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:54 Heat of formation + Delta-G solvation = 35.815565 kcal Electronic energy + Delta-G solvation = -26157.450492 eV Core-core repulsion = 22495.302709 eV Total energy + Delta-G solvation = -3662.147784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.58471 -40.46437 -39.45124 -37.44965 -36.10081 -34.71065 -32.54803 -32.11612 -30.61210 -27.96415 -27.33015 -26.38007 -24.64557 -23.83275 -23.24283 -22.65720 -21.66624 -21.15986 -20.27407 -19.10733 -18.78057 -18.07446 -17.11836 -17.04554 -16.61797 -16.34117 -16.08607 -15.63655 -15.43203 -15.32852 -15.23777 -14.71603 -14.59926 -14.41958 -14.14736 -13.45143 -13.34819 -13.28921 -13.12181 -12.84788 -12.70695 -12.62406 -12.40543 -12.39965 -11.94175 -11.83965 -11.76292 -11.58964 -11.51167 -11.39079 -11.30154 -11.11745 -10.71726 -10.68601 -10.65128 -10.17358 -9.72235 -8.89031 -7.84185 -5.19713 -0.81197 0.16693 0.54100 1.33512 1.45996 1.47726 1.56307 1.99197 2.02482 2.49644 2.97038 3.14938 3.33707 3.56654 3.59955 3.72314 3.88592 3.91478 3.94806 3.97561 4.12174 4.23325 4.35287 4.46385 4.50367 4.59666 4.72960 4.75191 4.78984 4.84156 4.87001 4.95540 5.03933 5.07960 5.12522 5.21121 5.27153 5.33287 5.36409 5.45007 5.48006 5.72330 5.82518 6.20899 6.31748 6.55529 7.01578 7.11245 7.78743 8.43245 9.26011 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.002583 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.460151 B =10839.348049 C =11908.675246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.075 0.925 4 C 0.191 3.809 5 N -0.629 5.629 6 C -0.241 4.241 7 H 0.083 0.917 8 C -0.067 4.067 9 N -0.951 5.951 10 Si 0.977 3.023 11 H -0.284 1.284 12 H -0.297 1.297 13 H -0.269 1.269 14 C 0.137 3.863 15 C -0.092 4.092 16 H 0.090 0.910 17 C 0.146 3.854 18 N -0.713 5.713 19 C 0.595 3.405 20 O -0.555 6.555 21 C -0.324 4.324 22 S 0.210 5.790 23 C 0.050 3.950 24 N -0.496 5.496 25 C 0.169 3.831 26 C -0.122 4.122 27 C -0.150 4.150 28 C -0.150 4.150 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.017 0.983 33 H 0.000 1.000 34 H 0.246 0.754 35 H 0.047 0.953 36 H 0.018 0.982 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.407 0.593 40 H 0.248 0.752 41 H 0.123 0.877 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.325 0.115 24.937 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.094 0.906 4 C 0.066 3.934 5 N -0.354 5.354 6 C -0.370 4.370 7 H 0.101 0.899 8 C -0.260 4.260 9 N -0.600 5.600 10 Si 0.806 3.194 11 H -0.211 1.211 12 H -0.223 1.223 13 H -0.194 1.194 14 C 0.011 3.989 15 C -0.111 4.111 16 H 0.108 0.892 17 C 0.022 3.978 18 N -0.364 5.364 19 C 0.382 3.618 20 O -0.436 6.436 21 C -0.448 4.448 22 S 0.466 5.534 23 C -0.244 4.244 24 N -0.210 5.210 25 C 0.031 3.969 26 C -0.142 4.142 27 C -0.187 4.187 28 C -0.188 4.188 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.018 0.982 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.242 0.758 40 H 0.264 0.736 41 H 0.141 0.859 42 H 0.121 0.879 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.343 0.074 24.598 24.634 hybrid contribution 0.574 -0.186 -1.137 1.287 sum -0.769 -0.113 23.460 23.473 Atomic orbital electron populations 1.21643 0.92939 1.01773 1.02153 1.22310 0.97014 0.98592 0.94062 0.90615 1.20982 0.88102 0.91983 0.92295 1.44781 1.32702 1.51240 1.06728 1.19459 1.07922 1.17735 0.91903 0.89926 1.25651 0.99866 1.02259 0.98249 1.70193 1.30395 1.46994 1.12417 0.85093 0.78499 0.78268 0.77567 1.21089 1.22322 1.19435 1.21771 0.95057 0.97518 0.84510 1.22493 0.97137 0.98374 0.93119 0.89185 1.21244 1.00802 0.92956 0.82775 1.45867 1.69518 1.12344 1.08632 1.16864 0.76731 0.86443 0.81803 1.90755 1.53088 1.15160 1.84566 1.25364 1.20826 0.99268 0.99308 1.83963 1.59195 0.99902 1.10339 1.29456 0.99087 0.98781 0.97105 1.66034 1.18174 1.00329 1.36456 1.19874 0.94185 0.95898 0.86972 1.20871 1.08738 0.89872 0.94759 1.23025 0.96744 1.03417 0.95501 1.22960 0.92646 1.03416 0.99770 0.93154 0.90540 0.92842 0.96493 0.98218 0.94480 0.93452 0.96468 0.91834 0.90083 0.75761 0.73649 0.85884 0.87875 0.87061 0.87187 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 9.13 71.98 0.66 -3.03 16 2 C -0.10 -3.49 3.01 -9.60 -0.03 -3.51 16 3 H 0.08 2.55 8.04 -2.39 -0.02 2.53 16 4 C 0.19 9.32 4.97 86.73 0.43 9.75 16 5 N -0.63 -31.79 3.39 -691.99 -2.35 -34.14 16 6 C -0.24 -13.39 10.28 84.04 0.86 -12.53 16 7 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 8 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 9 N -0.95 -57.21 10.31 21.65 0.22 -56.99 16 10 Si 0.98 45.53 29.55 68.60 2.03 47.55 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 14 C 0.14 5.29 6.65 86.86 0.58 5.86 16 15 C -0.09 -2.83 2.50 -9.40 -0.02 -2.85 16 16 H 0.09 2.67 8.04 -2.39 -0.02 2.65 16 17 C 0.15 3.87 5.13 86.38 0.44 4.32 16 18 N -0.71 -17.42 5.50 -467.09 -2.57 -19.99 16 19 C 0.60 16.15 7.78 86.45 0.67 16.82 16 20 O -0.56 -18.12 14.32 -4.30 -0.06 -18.18 16 21 C -0.32 -7.45 6.48 23.88 0.15 -7.29 16 22 S 0.21 3.08 22.35 -56.49 -1.26 1.82 16 23 C 0.05 0.64 12.22 130.60 1.60 2.24 16 24 N -0.50 -9.73 9.80 -190.40 -1.87 -11.60 16 25 C 0.17 3.94 6.42 42.09 0.27 4.21 16 26 C -0.12 -2.81 5.44 -11.54 -0.06 -2.87 16 27 C -0.15 -2.66 10.08 30.59 0.31 -2.35 16 28 C -0.15 -2.79 10.23 30.59 0.31 -2.47 16 29 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.02 0.92 7.06 -2.38 -0.02 0.90 16 33 H 0.00 -0.02 7.51 -2.38 -0.02 -0.04 16 34 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.02 0.69 7.91 -2.39 -0.02 0.67 16 37 H 0.06 1.84 7.96 -2.39 -0.02 1.82 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.41 8.60 7.66 -92.71 -0.71 7.89 16 40 H 0.25 0.84 8.06 -2.91 -0.02 0.82 16 41 H 0.12 3.33 6.17 -2.39 -0.01 3.32 16 42 H 0.10 1.85 7.74 -2.39 -0.02 1.83 16 43 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -72.45 379.77 1.08 -71.37 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.29 Total: 17.23 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 6.64 Total: 2.92 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -6.56 Total: -122.71 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.06 Total: -18.18 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.26 Total: 1.82 kcal Total: -72.45 1.08 -71.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093035499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.185 kcal (2) G-P(sol) polarization free energy of solvation -72.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds