Wall clock time and date at job start Tue Mar 31 2020 19:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64412 * 2 1 4 4 C 1.54322 * 110.71873 * 236.85669 * 2 1 3 5 5 N 1.47016 * 107.27584 * 219.44305 * 4 2 1 6 6 C 1.36934 * 125.65257 * 178.90450 * 5 4 2 7 7 H 1.08001 * 120.00082 * 180.02562 * 6 5 4 8 8 C 1.38818 * 120.00056 * 0.02904 * 6 5 4 9 9 N 1.31621 * 119.99528 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00255 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46979 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46936 * 119.99940 * 10 8 6 13 13 H 1.48493 * 109.47316 * 239.99911 * 10 8 6 14 14 C 1.47425 * 108.70144 * 358.94568 * 5 4 2 15 15 C 1.54913 * 104.83172 * 24.12623 * 14 5 4 16 16 H 1.08993 * 111.00353 * 81.06953 * 15 14 5 17 17 C 1.53005 * 111.00185 * 204.91813 * 15 14 5 18 18 N 1.46490 * 109.47021 * 287.19367 * 17 15 14 19 19 C 1.34778 * 120.00109 * 179.97438 * 18 17 15 20 20 O 1.21635 * 119.99848 * 0.02562 * 19 18 17 21 21 C 1.47264 * 120.00423 * 180.02562 * 19 18 17 22 22 C 1.35206 * 123.14510 * 180.02562 * 21 19 18 23 23 S 1.70934 * 108.82994 * 179.97438 * 22 21 19 24 24 C 1.70769 * 91.12956 * 359.97438 * 23 22 21 25 25 C 1.50698 * 124.71869 * 180.02562 * 24 23 22 26 26 C 1.52999 * 117.50231 * 8.72519 * 25 24 23 27 27 C 1.53002 * 117.49987 * 300.06317 * 25 24 23 28 28 N 1.28644 * 110.55849 * 359.76749 * 24 23 22 29 29 H 1.08994 * 109.47357 * 181.68934 * 1 2 3 30 30 H 1.08998 * 109.46865 * 301.68696 * 1 2 3 31 31 H 1.08994 * 109.46919 * 61.68521 * 1 2 3 32 32 H 1.09005 * 109.88278 * 338.86758 * 4 2 1 33 33 H 1.09005 * 109.88137 * 99.87244 * 4 2 1 34 34 H 0.97004 * 119.99644 * 179.97438 * 9 8 6 35 35 H 1.08996 * 110.36900 * 142.96779 * 14 5 4 36 36 H 1.08998 * 110.36632 * 265.28801 * 14 5 4 37 37 H 1.09004 * 109.47149 * 47.19798 * 17 15 14 38 38 H 1.08997 * 109.46866 * 167.19429 * 17 15 14 39 39 H 0.96998 * 120.00572 * 0.02562 * 18 17 15 40 40 H 1.08005 * 125.58720 * 359.95654 * 22 21 19 41 41 H 1.09005 * 115.54672 * 154.39872 * 25 24 23 42 42 H 1.08997 * 117.49889 * 359.97438 * 26 25 24 43 43 H 1.08996 * 117.49902 * 145.01692 * 26 25 24 44 44 H 1.08998 * 117.50081 * 214.98047 * 27 25 24 45 45 H 1.08994 * 117.49818 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 3.2445 -1.5495 -0.7417 6 6 4.0034 -2.3955 -1.5056 7 1 4.8454 -2.9103 -1.0670 8 6 3.6905 -2.5915 -2.8438 9 7 2.6640 -1.9644 -3.3782 10 14 4.7261 -3.7449 -3.8860 11 1 5.8128 -4.3221 -3.0545 12 1 3.8710 -4.8395 -4.4114 13 1 5.3173 -2.9908 -5.0203 14 6 3.4633 -1.2511 0.6853 15 6 2.0790 -0.7976 1.2124 16 1 1.4452 -1.6561 1.4346 17 6 2.2279 0.1037 2.4398 18 7 2.6329 -0.7042 3.5926 19 6 2.8261 -0.1190 4.7912 20 8 2.6637 1.0800 4.9158 21 6 3.2338 -0.9310 5.9501 22 6 3.4444 -0.4106 7.1801 23 16 3.9000 -1.6705 8.2416 24 6 3.7824 -2.8190 6.9833 25 6 4.0547 -4.2930 7.1383 26 6 4.2648 -4.8273 8.5565 27 6 5.4533 -4.7085 7.5991 28 7 3.4239 -2.2515 5.8858 29 1 -0.3634 -1.0271 0.0303 30 1 -0.3633 0.5398 0.8745 31 1 -0.3633 0.4874 -0.9047 32 1 1.3129 -1.4731 -1.5801 33 1 2.3716 -0.0991 -1.9990 34 1 2.4455 -2.1011 -4.3133 35 1 3.7961 -2.1448 1.2131 36 1 4.1932 -0.4494 0.7976 37 1 2.9855 0.8625 2.2436 38 1 1.2750 0.5883 2.6524 39 1 2.7627 -1.6603 3.4933 40 1 3.3419 0.6307 7.4480 41 1 3.5459 -4.9425 6.4260 42 1 4.2065 -4.1126 9.3774 43 1 3.8944 -5.8284 8.7771 44 1 5.8644 -5.6315 7.1903 45 1 6.1765 -3.9157 7.7897 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093244632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:04 Heat of formation + Delta-G solvation = 51.132890 kcal Electronic energy + Delta-G solvation = -25916.951335 eV Core-core repulsion = 22255.467761 eV Total energy + Delta-G solvation = -3661.483575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.67339 -39.06775 -37.96332 -37.36588 -34.66734 -32.90012 -30.87076 -30.69494 -29.38982 -26.59798 -25.85833 -25.13262 -23.78619 -22.94410 -22.41737 -21.13819 -20.17016 -19.92378 -19.27344 -18.50981 -16.91444 -16.74155 -16.50024 -15.71473 -15.66465 -15.05524 -14.88154 -14.46241 -14.28395 -13.93583 -13.75474 -13.52841 -13.10510 -12.88449 -12.71915 -12.50330 -12.31889 -11.98894 -11.79938 -11.66182 -11.36974 -11.32676 -11.17626 -11.06142 -10.79577 -10.75453 -10.33383 -10.14206 -10.04720 -9.94636 -9.89548 -9.87112 -9.69866 -9.52583 -9.17938 -8.85997 -8.57657 -6.79475 -5.68362 -3.01476 0.21461 0.87080 1.28684 1.73076 3.16229 3.22821 3.40862 3.41336 3.46760 3.49301 3.57998 4.26331 4.41642 4.45958 4.51824 4.75785 4.92293 5.03785 5.11000 5.15194 5.25176 5.34023 5.37281 5.50829 5.55500 5.56274 5.59532 5.64760 5.79701 5.90098 6.06015 6.13386 6.22769 6.32504 6.47020 6.52131 6.63032 6.66162 6.79362 6.98771 7.12863 7.60344 7.61672 7.67619 7.87102 8.19298 8.29127 9.25391 9.85632 10.52144 11.43369 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.002666 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.285569 B =10498.322158 C =12273.532139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.184 3.816 5 N -0.606 5.606 6 C -0.226 4.226 7 H 0.078 0.922 8 C -0.010 4.010 9 N -0.922 5.922 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.142 3.858 15 C -0.112 4.112 16 H 0.081 0.919 17 C 0.131 3.869 18 N -0.703 5.703 19 C 0.590 3.410 20 O -0.540 6.540 21 C 0.017 3.983 22 C -0.230 4.230 23 S 0.204 5.796 24 C 0.060 3.940 25 C -0.086 4.086 26 C -0.169 4.169 27 C -0.158 4.158 28 N -0.439 5.439 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.251 0.749 35 H 0.037 0.963 36 H 0.019 0.981 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.411 0.589 40 H 0.190 0.810 41 H 0.137 0.863 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.510 -2.069 26.333 26.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.354 4.354 7 H 0.095 0.905 8 C -0.206 4.206 9 N -0.569 5.569 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.015 3.985 15 C -0.132 4.132 16 H 0.099 0.901 17 C 0.008 3.992 18 N -0.353 5.353 19 C 0.373 3.627 20 O -0.418 6.418 21 C -0.117 4.117 22 C -0.372 4.372 23 S 0.462 5.538 24 C -0.219 4.219 25 C -0.108 4.108 26 C -0.207 4.207 27 C -0.197 4.197 28 N -0.154 5.154 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.247 0.753 40 H 0.207 0.793 41 H 0.155 0.845 42 H 0.116 0.884 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.568 -1.631 26.688 26.744 hybrid contribution 0.287 -0.424 -1.564 1.646 sum 0.855 -2.055 25.124 25.222 Atomic orbital electron populations 1.21691 0.95318 1.01469 1.00681 1.22441 0.95154 0.99106 0.96314 0.91386 1.21213 0.89098 0.93105 0.90690 1.44467 1.32612 1.51505 1.04642 1.19110 1.07525 1.17560 0.91251 0.90456 1.24801 0.98471 1.00398 0.96900 1.69978 1.28804 1.45622 1.12542 0.86050 0.79281 0.80119 0.80366 1.20538 1.21793 1.21796 1.21587 0.92976 0.97150 0.86767 1.22679 0.99512 0.98068 0.92947 0.90074 1.21482 1.00252 0.93762 0.83712 1.45915 1.67859 1.12986 1.08566 1.17042 0.77538 0.86235 0.81883 1.90809 1.52577 1.13897 1.84538 1.20475 1.06974 0.89149 0.95147 1.26619 1.06921 1.06765 0.96875 1.82699 1.60500 0.96515 1.14108 1.26199 1.03570 1.00134 0.92016 1.20438 1.02286 0.87969 1.00111 1.23173 1.02537 1.03329 0.91708 1.23179 0.90396 1.03949 1.02206 1.66824 1.13767 1.07775 1.26991 0.92778 0.93694 0.92683 0.93314 0.94037 0.93859 0.94507 0.96350 0.91134 0.91385 0.75291 0.79261 0.84536 0.88369 0.87069 0.87197 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.13 37.16 0.34 -1.80 16 2 C -0.11 -2.05 3.01 -88.78 -0.27 -2.32 16 3 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 4 C 0.18 4.48 4.97 -3.07 -0.02 4.46 16 5 N -0.61 -15.68 3.39 -170.07 -0.58 -16.26 16 6 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 8 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 9 N -0.92 -27.33 10.31 55.49 0.57 -26.75 16 10 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 14 C 0.14 2.96 6.65 -2.53 -0.02 2.95 16 15 C -0.11 -1.96 2.50 -88.47 -0.22 -2.18 16 16 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 17 C 0.13 2.04 5.13 -4.04 -0.02 2.02 16 18 N -0.70 -10.49 5.50 -61.44 -0.34 -10.83 16 19 C 0.59 9.16 7.80 -12.59 -0.10 9.06 16 20 O -0.54 -9.64 16.71 5.25 0.09 -9.56 16 21 C 0.02 0.23 6.70 -84.53 -0.57 -0.33 16 22 C -0.23 -2.45 10.62 29.65 0.31 -2.13 16 23 S 0.20 1.56 21.65 -107.50 -2.33 -0.77 16 24 C 0.06 0.59 6.99 -13.61 -0.10 0.49 16 25 C -0.09 -0.63 6.33 -91.77 -0.58 -1.21 16 26 C -0.17 -0.80 10.01 -26.69 -0.27 -1.07 16 27 C -0.16 -0.88 10.24 -26.69 -0.27 -1.15 16 28 N -0.44 -5.54 10.12 -8.51 -0.09 -5.62 16 29 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 1.31 7.06 -51.93 -0.37 0.94 16 33 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 37 H 0.07 1.15 7.96 -51.93 -0.41 0.74 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.41 5.89 7.99 -40.82 -0.33 5.56 16 40 H 0.19 1.80 8.03 -52.48 -0.42 1.38 16 41 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.10 0.41 7.21 -51.93 -0.37 0.03 16 43 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -33.26 383.55 -10.82 -44.08 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.89 Total: 2.75 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.02 Total: -0.15 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.43 Total: -59.46 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.33 Total: -0.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.26 -10.82 -44.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093244632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.213 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds