Wall clock time and date at job start Tue Mar 31 2020 19:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64412 * 2 1 4 4 C 1.54322 * 110.71873 * 236.85669 * 2 1 3 5 5 N 1.47016 * 107.27584 * 219.44305 * 4 2 1 6 6 C 1.36934 * 125.65257 * 178.90450 * 5 4 2 7 7 H 1.08001 * 120.00082 * 180.02562 * 6 5 4 8 8 C 1.38818 * 120.00056 * 0.02904 * 6 5 4 9 9 N 1.31621 * 119.99528 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00255 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46979 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46936 * 119.99940 * 10 8 6 13 13 H 1.48493 * 109.47316 * 239.99911 * 10 8 6 14 14 C 1.47425 * 108.70144 * 358.94568 * 5 4 2 15 15 C 1.54913 * 104.83172 * 24.12623 * 14 5 4 16 16 H 1.08993 * 111.00353 * 81.06953 * 15 14 5 17 17 C 1.53005 * 111.00185 * 204.91813 * 15 14 5 18 18 N 1.46490 * 109.47021 * 287.19367 * 17 15 14 19 19 C 1.34778 * 120.00109 * 179.97438 * 18 17 15 20 20 O 1.21635 * 119.99848 * 0.02562 * 19 18 17 21 21 C 1.47264 * 120.00423 * 180.02562 * 19 18 17 22 22 C 1.35206 * 123.14510 * 180.02562 * 21 19 18 23 23 S 1.70934 * 108.82994 * 179.97438 * 22 21 19 24 24 C 1.70769 * 91.12956 * 359.97438 * 23 22 21 25 25 C 1.50698 * 124.71869 * 180.02562 * 24 23 22 26 26 C 1.52999 * 117.50231 * 8.72519 * 25 24 23 27 27 C 1.53002 * 117.49987 * 300.06317 * 25 24 23 28 28 N 1.28644 * 110.55849 * 359.76749 * 24 23 22 29 29 H 1.08994 * 109.47357 * 181.68934 * 1 2 3 30 30 H 1.08998 * 109.46865 * 301.68696 * 1 2 3 31 31 H 1.08994 * 109.46919 * 61.68521 * 1 2 3 32 32 H 1.09005 * 109.88278 * 338.86758 * 4 2 1 33 33 H 1.09005 * 109.88137 * 99.87244 * 4 2 1 34 34 H 0.97004 * 119.99644 * 179.97438 * 9 8 6 35 35 H 1.08996 * 110.36900 * 142.96779 * 14 5 4 36 36 H 1.08998 * 110.36632 * 265.28801 * 14 5 4 37 37 H 1.09004 * 109.47149 * 47.19798 * 17 15 14 38 38 H 1.08997 * 109.46866 * 167.19429 * 17 15 14 39 39 H 0.96998 * 120.00572 * 0.02562 * 18 17 15 40 40 H 1.08005 * 125.58720 * 359.95654 * 22 21 19 41 41 H 1.09005 * 115.54672 * 154.39872 * 25 24 23 42 42 H 1.08997 * 117.49889 * 359.97438 * 26 25 24 43 43 H 1.08996 * 117.49902 * 145.01692 * 26 25 24 44 44 H 1.08998 * 117.50081 * 214.98047 * 27 25 24 45 45 H 1.08994 * 117.49818 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 3.2445 -1.5495 -0.7417 6 6 4.0034 -2.3955 -1.5056 7 1 4.8454 -2.9103 -1.0670 8 6 3.6905 -2.5915 -2.8438 9 7 2.6640 -1.9644 -3.3782 10 14 4.7261 -3.7449 -3.8860 11 1 5.8128 -4.3221 -3.0545 12 1 3.8710 -4.8395 -4.4114 13 1 5.3173 -2.9908 -5.0203 14 6 3.4633 -1.2511 0.6853 15 6 2.0790 -0.7976 1.2124 16 1 1.4452 -1.6561 1.4346 17 6 2.2279 0.1037 2.4398 18 7 2.6329 -0.7042 3.5926 19 6 2.8261 -0.1190 4.7912 20 8 2.6637 1.0800 4.9158 21 6 3.2338 -0.9310 5.9501 22 6 3.4444 -0.4106 7.1801 23 16 3.9000 -1.6705 8.2416 24 6 3.7824 -2.8190 6.9833 25 6 4.0547 -4.2930 7.1383 26 6 4.2648 -4.8273 8.5565 27 6 5.4533 -4.7085 7.5991 28 7 3.4239 -2.2515 5.8858 29 1 -0.3634 -1.0271 0.0303 30 1 -0.3633 0.5398 0.8745 31 1 -0.3633 0.4874 -0.9047 32 1 1.3129 -1.4731 -1.5801 33 1 2.3716 -0.0991 -1.9990 34 1 2.4455 -2.1011 -4.3133 35 1 3.7961 -2.1448 1.2131 36 1 4.1932 -0.4494 0.7976 37 1 2.9855 0.8625 2.2436 38 1 1.2750 0.5883 2.6524 39 1 2.7627 -1.6603 3.4933 40 1 3.3419 0.6307 7.4480 41 1 3.5459 -4.9425 6.4260 42 1 4.2065 -4.1126 9.3774 43 1 3.8944 -5.8284 8.7771 44 1 5.8644 -5.6315 7.1903 45 1 6.1765 -3.9157 7.7897 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093244632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:03 Heat of formation + Delta-G solvation = 29.761963 kcal Electronic energy + Delta-G solvation = -25917.878048 eV Core-core repulsion = 22255.467761 eV Total energy + Delta-G solvation = -3662.410288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62621 -40.21405 -39.43216 -37.95892 -36.13482 -34.69892 -32.56411 -31.73417 -30.85303 -28.02710 -27.34851 -26.44489 -25.05121 -23.83933 -23.31458 -21.96043 -21.65678 -21.27070 -20.57917 -19.50875 -18.79851 -17.86406 -17.23481 -17.01420 -16.71827 -16.59997 -16.01106 -15.73262 -15.53517 -15.20985 -14.99868 -14.59689 -14.56370 -14.40135 -14.16071 -13.47466 -13.31204 -13.27173 -13.15030 -13.03388 -12.87453 -12.70681 -12.42784 -12.39555 -11.93582 -11.89013 -11.86630 -11.64444 -11.55362 -11.46487 -11.40097 -11.14038 -10.87630 -10.72174 -10.60328 -10.23623 -9.76538 -8.90819 -7.85629 -5.21453 -0.56913 0.18055 0.53025 0.81313 1.44624 1.45829 1.56256 2.12059 2.21307 2.48367 2.72252 2.99229 3.31964 3.56557 3.61589 3.75050 3.82520 3.90021 3.92529 4.01911 4.09026 4.13220 4.33390 4.39925 4.47017 4.57282 4.67526 4.72435 4.76192 4.77679 4.82210 4.93906 5.01609 5.06410 5.09277 5.11934 5.20918 5.29394 5.34049 5.42910 5.45923 5.70531 5.80413 6.19209 6.23638 6.55173 7.03237 7.09807 7.76598 8.41578 9.24759 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.002666 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.285569 B =10498.322158 C =12273.532139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.077 0.923 4 C 0.192 3.808 5 N -0.628 5.628 6 C -0.243 4.243 7 H 0.081 0.919 8 C -0.067 4.067 9 N -0.950 5.950 10 Si 0.979 3.021 11 H -0.266 1.266 12 H -0.290 1.290 13 H -0.292 1.292 14 C 0.138 3.862 15 C -0.090 4.090 16 H 0.086 0.914 17 C 0.143 3.857 18 N -0.702 5.702 19 C 0.589 3.411 20 O -0.571 6.571 21 C -0.012 4.012 22 C -0.240 4.240 23 S 0.296 5.704 24 C 0.044 3.956 25 C -0.112 4.112 26 C -0.150 4.150 27 C -0.157 4.157 28 N -0.471 5.471 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.017 0.983 33 H 0.002 0.998 34 H 0.247 0.753 35 H 0.041 0.959 36 H 0.017 0.983 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.414 0.586 40 H 0.197 0.803 41 H 0.130 0.870 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -2.917 29.355 29.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.096 0.904 4 C 0.067 3.933 5 N -0.354 5.354 6 C -0.372 4.372 7 H 0.098 0.902 8 C -0.260 4.260 9 N -0.599 5.599 10 Si 0.807 3.193 11 H -0.190 1.190 12 H -0.217 1.217 13 H -0.220 1.220 14 C 0.013 3.987 15 C -0.110 4.110 16 H 0.104 0.896 17 C 0.019 3.981 18 N -0.351 5.351 19 C 0.374 3.626 20 O -0.451 6.451 21 C -0.147 4.147 22 C -0.383 4.383 23 S 0.555 5.445 24 C -0.234 4.234 25 C -0.134 4.134 26 C -0.187 4.187 27 C -0.196 4.196 28 N -0.186 5.186 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.020 0.980 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.250 0.750 40 H 0.214 0.786 41 H 0.148 0.852 42 H 0.126 0.874 43 H 0.146 0.854 44 H 0.137 0.863 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.035 -2.499 29.758 29.880 hybrid contribution 0.219 -0.195 -2.382 2.400 sum 1.254 -2.694 27.376 27.537 Atomic orbital electron populations 1.21640 0.92866 1.01728 1.02229 1.22323 0.97085 0.98617 0.93941 0.90447 1.20985 0.88038 0.91991 0.92286 1.44791 1.32752 1.51304 1.06601 1.19494 1.07902 1.17831 0.91972 0.90158 1.25667 0.99876 1.02269 0.98159 1.70202 1.30321 1.46997 1.12405 0.84998 0.77943 0.77908 0.78416 1.19019 1.21705 1.21958 1.21728 0.95102 0.97281 0.84567 1.22464 0.97036 0.98277 0.93208 0.89602 1.21279 1.00745 0.93011 0.83020 1.45858 1.67839 1.13013 1.08434 1.17372 0.76748 0.86122 0.82407 1.90776 1.54072 1.15133 1.85107 1.20223 1.09652 0.89713 0.95127 1.26933 1.05916 1.08352 0.97126 1.82316 1.57885 0.93332 1.10964 1.26688 1.02630 1.01654 0.92437 1.20547 1.03998 0.86678 1.02145 1.23313 1.00912 1.04183 0.90337 1.23287 0.89868 1.04267 1.02146 1.66799 1.15413 1.07598 1.28814 0.93287 0.90558 0.92600 0.96480 0.97986 0.94408 0.94063 0.96490 0.91823 0.90069 0.74975 0.78557 0.85222 0.87410 0.85403 0.86313 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 9.13 71.98 0.66 -3.26 16 2 C -0.10 -3.70 3.01 -9.60 -0.03 -3.73 16 3 H 0.08 2.74 8.04 -2.39 -0.02 2.72 16 4 C 0.19 9.72 4.97 86.73 0.43 10.15 16 5 N -0.63 -33.38 3.39 -691.99 -2.35 -35.73 16 6 C -0.24 -14.04 10.28 84.04 0.86 -13.18 16 7 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 8 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 9 N -0.95 -58.36 10.31 21.65 0.22 -58.14 16 10 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 13 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 14 C 0.14 5.84 6.65 86.86 0.58 6.42 16 15 C -0.09 -3.09 2.50 -9.40 -0.02 -3.11 16 16 H 0.09 2.90 8.04 -2.39 -0.02 2.88 16 17 C 0.14 4.30 5.13 86.38 0.44 4.74 16 18 N -0.70 -20.63 5.50 -466.52 -2.56 -23.20 16 19 C 0.59 18.15 7.80 86.62 0.68 18.83 16 20 O -0.57 -20.26 16.71 -4.14 -0.07 -20.33 16 21 C -0.01 -0.32 6.70 40.56 0.27 -0.05 16 22 C -0.24 -4.79 10.62 67.12 0.71 -4.08 16 23 S 0.30 3.75 21.65 -56.49 -1.22 2.53 16 24 C 0.04 0.80 6.99 88.57 0.62 1.42 16 25 C -0.11 -1.45 6.33 -11.54 -0.07 -1.53 16 26 C -0.15 -0.97 10.01 30.62 0.31 -0.66 16 27 C -0.16 -1.38 10.24 30.62 0.31 -1.07 16 28 N -0.47 -11.63 10.12 -180.84 -1.83 -13.46 16 29 H 0.05 1.55 8.13 -2.39 -0.02 1.53 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 32 H 0.02 0.96 7.06 -2.38 -0.02 0.94 16 33 H 0.00 0.11 7.51 -2.38 -0.02 0.09 16 34 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.02 0.74 7.91 -2.39 -0.02 0.72 16 37 H 0.06 2.03 7.96 -2.39 -0.02 2.01 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.41 11.77 7.99 -92.71 -0.74 11.03 16 40 H 0.20 3.48 8.03 -2.91 -0.02 3.46 16 41 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.11 0.48 7.21 -2.39 -0.02 0.46 16 43 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -74.70 383.55 0.69 -74.01 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.26 Total: 18.09 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 6.21 Total: 7.47 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -6.52 Total: -130.52 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.07 Total: -20.33 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.22 Total: 2.53 kcal Total: -74.70 0.69 -74.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093244632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.771 kcal (2) G-P(sol) polarization free energy of solvation -74.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds