Wall clock time and date at job start Tue Mar 31 2020 19:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39905 * 109.47157 * 2 1 4 4 F 1.39900 * 109.47010 * 119.99609 * 2 1 3 5 5 C 1.50697 * 109.47466 * 239.99756 * 2 1 3 6 6 O 1.21283 * 119.99731 * 25.00068 * 5 2 1 7 7 N 1.34779 * 120.00429 * 205.00024 * 5 2 1 8 8 C 1.46497 * 119.99904 * 179.97438 * 7 5 2 9 9 H 1.08997 * 109.52399 * 324.87400 * 8 7 5 10 10 C 1.53121 * 109.52147 * 85.00464 * 8 7 5 11 11 C 1.53035 * 109.27734 * 177.55560 * 10 8 7 12 12 N 1.46847 * 109.52606 * 300.82126 * 11 10 8 13 13 C 1.46901 * 111.00009 * 185.84117 * 12 11 10 14 14 C 1.50695 * 109.47267 * 66.04436 * 13 12 11 15 15 O 1.21289 * 120.00182 * 359.97438 * 14 13 12 16 16 N 1.34783 * 119.99828 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99926 * 179.97438 * 16 14 13 18 18 H 1.07998 * 119.99961 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99736 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00208 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99843 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47191 * 59.99609 * 21 19 17 23 23 H 1.48496 * 109.47522 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46985 * 300.00074 * 21 19 17 25 25 C 1.46844 * 111.20049 * 61.73670 * 12 11 10 26 26 C 1.53038 * 109.52383 * 298.26575 * 25 12 11 27 27 H 1.09002 * 109.50170 * 299.22972 * 26 25 12 28 28 O 1.42902 * 109.49891 * 179.12083 * 26 25 12 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00208 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00190 * 1 2 3 32 32 H 0.96997 * 119.99462 * 359.97438 * 7 5 2 33 33 H 1.08998 * 109.49892 * 297.49313 * 10 8 7 34 34 H 1.08997 * 109.50634 * 57.61558 * 10 8 7 35 35 H 1.09010 * 109.46568 * 60.83238 * 11 10 8 36 36 H 1.09004 * 109.46648 * 180.80925 * 11 10 8 37 37 H 1.09010 * 109.46881 * 186.04266 * 13 12 11 38 38 H 1.08998 * 109.47262 * 306.04025 * 13 12 11 39 39 H 0.96996 * 119.99819 * 0.02562 * 16 14 13 40 40 H 0.96998 * 119.99851 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.45892 * 58.27990 * 25 12 11 42 42 H 1.08996 * 109.46451 * 178.24456 * 25 12 11 43 43 H 0.96696 * 114.00087 * 60.19743 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 1.1423 5 6 2.0324 -0.7104 -1.2304 6 8 1.3370 -0.7706 -2.2223 7 7 3.2544 -1.2790 -1.2286 8 6 3.7424 -1.9701 -2.4246 9 1 2.9103 -2.4670 -2.9232 10 6 4.3783 -0.9550 -3.3784 11 6 4.9403 -1.6902 -4.5972 12 7 5.9414 -2.6715 -4.1599 13 6 6.6021 -3.2988 -5.3122 14 6 7.4123 -2.2650 -6.0509 15 8 7.4366 -1.1183 -5.6565 16 7 8.1092 -2.6145 -7.1504 17 6 8.8459 -1.6738 -7.8228 18 1 8.8675 -0.6527 -7.4716 19 6 9.5639 -2.0340 -8.9566 20 7 9.5371 -3.2763 -9.3841 21 14 10.5682 -0.7525 -9.8722 22 1 11.5956 -0.1857 -8.9620 23 1 11.2356 -1.3865 -11.0375 24 1 9.6723 0.3335 -10.3448 25 6 5.3435 -3.6841 -3.2804 26 6 4.7934 -3.0084 -2.0223 27 1 5.6064 -2.5157 -1.4889 28 8 4.1936 -3.9915 -1.1763 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 3.8106 -1.2305 -0.4354 33 1 3.6240 -0.2377 -3.7020 34 1 5.1846 -0.4299 -2.8664 35 1 4.1312 -2.2038 -5.1167 36 1 5.4065 -0.9719 -5.2717 37 1 7.2599 -4.0956 -4.9645 38 1 5.8486 -3.7155 -5.9806 39 1 8.0888 -3.5313 -7.4664 40 1 10.0386 -3.5277 -10.1754 41 1 4.5325 -4.1883 -3.8060 42 1 6.1023 -4.4140 -2.9985 43 1 4.8031 -4.6823 -0.8825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099618142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:17 Heat of formation + Delta-G solvation = -211.160579 kcal Electronic energy + Delta-G solvation = -29595.978207 eV Core-core repulsion = 24926.138333 eV Total energy + Delta-G solvation = -4669.839874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.55672 -47.55182 -40.48155 -39.18957 -38.01336 -36.11721 -35.15444 -33.89494 -32.14706 -31.58993 -31.14196 -29.73985 -27.50114 -25.46425 -24.31042 -23.25878 -22.52345 -20.99549 -20.29428 -19.26911 -18.81325 -18.15116 -17.94580 -17.43696 -17.17584 -16.33068 -16.16952 -15.77066 -15.27949 -14.91105 -14.77981 -14.62071 -14.36230 -14.15860 -14.06255 -13.86705 -13.74655 -13.68900 -13.46389 -13.07530 -13.02076 -12.83885 -12.77513 -12.47388 -12.33831 -12.01302 -11.59288 -11.44483 -11.39198 -11.13789 -10.85632 -10.71545 -10.46134 -10.39418 -10.24786 -10.14335 -9.53388 -9.40576 -8.52597 -8.03705 -7.94411 -6.44576 -3.85543 1.84326 2.27621 3.18123 3.24302 3.28286 3.34467 3.58090 3.62254 3.85732 3.97594 4.11325 4.15663 4.21651 4.52690 4.76747 4.86559 4.99103 5.00078 5.14004 5.15219 5.21623 5.24122 5.34224 5.45760 5.52247 5.61416 5.63616 5.75974 5.81179 5.91371 5.99859 6.21519 6.28308 6.39252 6.91068 7.12722 7.17422 7.39731 7.52388 7.54631 8.02723 8.58056 9.14848 9.50665 10.02019 10.72973 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.023206 B = 0.002273 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.295500 B =12314.681738 C =13036.953162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.281 3.719 3 F -0.181 7.181 4 F -0.189 7.189 5 C 0.487 3.513 6 O -0.503 6.503 7 N -0.696 5.696 8 C 0.152 3.848 9 H 0.095 0.905 10 C -0.121 4.121 11 C 0.053 3.947 12 N -0.512 5.512 13 C 0.047 3.953 14 C 0.442 3.558 15 O -0.577 6.577 16 N -0.563 5.563 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.027 3.973 26 C 0.102 3.898 27 H 0.074 0.926 28 O -0.563 6.563 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.408 0.592 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.028 0.972 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.042 0.958 42 H 0.083 0.917 43 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.486 -1.268 18.464 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.242 3.758 3 F -0.162 7.162 4 F -0.170 7.170 5 C 0.268 3.732 6 O -0.378 6.378 7 N -0.346 5.346 8 C 0.048 3.952 9 H 0.113 0.887 10 C -0.160 4.160 11 C -0.075 4.075 12 N -0.238 5.238 13 C -0.084 4.084 14 C 0.228 3.772 15 O -0.462 6.462 16 N -0.199 5.199 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.102 4.102 26 C 0.043 3.957 27 H 0.092 0.908 28 O -0.368 6.368 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.109 0.891 32 H 0.243 0.757 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.046 0.954 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.101 0.899 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -15.019 -0.008 18.033 23.468 hybrid contribution 0.905 -0.799 -0.560 1.331 sum -14.114 -0.806 17.473 22.475 Atomic orbital electron populations 1.22635 0.88813 1.06358 1.06183 1.21379 0.95918 0.76234 0.82304 1.93103 1.90512 1.36064 1.96561 1.93065 1.90476 1.80666 1.52801 1.20688 0.82735 0.80692 0.89131 1.90792 1.56004 1.57971 1.33020 1.45932 1.16606 1.54561 1.17453 1.21256 0.96814 0.91855 0.85300 0.88657 1.21938 1.00521 0.97593 0.95918 1.22277 0.92608 0.95929 0.96698 1.61487 1.29939 1.14290 1.18110 1.21843 0.97837 0.96907 0.91821 1.19683 0.84866 0.89364 0.83305 1.90488 1.66900 1.20447 1.68323 1.41862 1.42245 1.12244 1.23572 1.19645 1.23388 0.93061 1.06813 0.87927 1.25264 0.98230 0.97029 0.97382 1.69600 1.42609 1.16839 1.25227 0.85917 0.79666 0.80025 0.78615 1.19876 1.20982 1.19892 1.22748 0.98523 0.94618 0.94312 1.22007 0.94197 0.88626 0.90902 0.90767 1.86537 1.41357 1.40787 1.68159 0.88783 0.87981 0.89125 0.75687 0.90326 0.90066 0.95355 0.86933 0.89211 0.93214 0.77480 0.91791 0.93962 0.89902 0.77102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 8.92 37.16 0.33 -0.97 16 2 C 0.28 2.69 2.47 -27.89 -0.07 2.62 16 3 F -0.18 -1.93 17.05 2.25 0.04 -1.89 16 4 F -0.19 -1.78 16.51 2.25 0.04 -1.74 16 5 C 0.49 5.70 7.20 -10.99 -0.08 5.62 16 6 O -0.50 -7.21 15.76 5.55 0.09 -7.13 16 7 N -0.70 -7.53 4.93 -53.69 -0.26 -7.80 16 8 C 0.15 1.82 2.20 -67.81 -0.15 1.67 16 9 H 0.10 1.29 7.58 -51.93 -0.39 0.90 16 10 C -0.12 -1.64 5.67 -26.65 -0.15 -1.79 16 11 C 0.05 0.83 5.11 -3.83 -0.02 0.81 16 12 N -0.51 -7.88 4.39 -236.11 -1.04 -8.92 16 13 C 0.05 0.79 5.45 -4.98 -0.03 0.77 16 14 C 0.44 10.03 7.46 -10.98 -0.08 9.94 16 15 O -0.58 -14.92 13.92 5.55 0.08 -14.84 16 16 N -0.56 -13.87 5.29 -10.96 -0.06 -13.93 16 17 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 18 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 21 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 25 C 0.03 0.32 5.09 -3.83 -0.02 0.30 16 26 C 0.10 1.07 3.13 -26.65 -0.08 0.99 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 O -0.56 -5.22 13.23 -35.23 -0.47 -5.69 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.10 0.75 7.87 -51.93 -0.41 0.35 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.41 3.71 8.16 -40.82 -0.33 3.38 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 36 H 0.11 2.17 5.80 -51.93 -0.30 1.87 16 37 H 0.09 1.34 7.98 -51.92 -0.41 0.92 16 38 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 39 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 43 H 0.38 1.96 9.08 45.56 0.41 2.37 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -32.44 365.84 -6.03 -38.47 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -5.07 Total: 13.47 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -0.59 Total: 12.13 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.64 Total: -54.09 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.30 Total: -27.65 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.08 Total: -3.63 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.44 -6.03 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099618142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.692 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds