Wall clock time and date at job start Tue Mar 31 2020 19:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39901 * 109.47141 * 2 1 4 4 F 1.39905 * 109.47541 * 239.99868 * 2 1 3 5 5 C 1.50702 * 109.47077 * 119.99960 * 2 1 3 6 6 O 1.21276 * 119.99744 * 25.00379 * 5 2 1 7 7 N 1.34777 * 119.99898 * 205.00065 * 5 2 1 8 8 C 1.46498 * 119.99817 * 179.97438 * 7 5 2 9 9 H 1.09000 * 109.57476 * 35.16075 * 8 7 5 10 10 C 1.53123 * 109.52509 * 275.00196 * 8 7 5 11 11 C 1.53036 * 109.27788 * 182.44210 * 10 8 7 12 12 N 1.46846 * 109.52384 * 59.18000 * 11 10 8 13 13 C 1.46903 * 110.99717 * 174.15896 * 12 11 10 14 14 C 1.50695 * 109.47089 * 66.04674 * 13 12 11 15 15 O 1.21300 * 120.00132 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00085 * 179.97438 * 14 13 12 17 17 C 1.37097 * 120.00159 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00100 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99985 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00002 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99941 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47139 * 59.99752 * 21 19 17 23 23 H 1.48499 * 109.47142 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46954 * 299.99808 * 21 19 17 25 25 C 1.46842 * 111.19700 * 298.25435 * 12 11 10 26 26 C 1.53041 * 109.52407 * 61.74724 * 25 12 11 27 27 H 1.08992 * 109.50537 * 60.79770 * 26 25 12 28 28 O 1.42900 * 109.50505 * 180.87834 * 26 25 12 29 29 H 1.08991 * 109.47335 * 299.99893 * 1 2 3 30 30 H 1.09007 * 109.46762 * 60.00511 * 1 2 3 31 31 H 1.09005 * 109.46998 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00183 * 0.02562 * 7 5 2 33 33 H 1.09000 * 109.50367 * 62.49755 * 10 8 7 34 34 H 1.09006 * 109.50264 * 302.38094 * 10 8 7 35 35 H 1.08999 * 109.46075 * 179.19317 * 11 10 8 36 36 H 1.08998 * 109.46309 * 299.16289 * 11 10 8 37 37 H 1.09007 * 109.46443 * 186.04380 * 13 12 11 38 38 H 1.08994 * 109.47048 * 306.04358 * 13 12 11 39 39 H 0.97003 * 119.99880 * 359.97438 * 16 14 13 40 40 H 0.97000 * 120.00009 * 180.02562 * 20 19 17 41 41 H 1.09006 * 109.46447 * 181.75636 * 25 12 11 42 42 H 1.08994 * 109.46873 * 301.72670 * 25 12 11 43 43 H 0.96696 * 113.99846 * 299.99875 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2305 6 8 1.3370 -1.5393 1.7784 7 7 3.2543 -0.4246 1.7220 8 6 3.7424 -1.1148 2.9185 9 1 3.3821 -2.1435 2.9191 10 6 3.2326 -0.3933 4.1692 11 6 3.7952 -1.0823 5.4145 12 7 5.2627 -1.0496 5.3727 13 6 5.8366 -1.5784 6.6173 14 6 5.5139 -3.0456 6.7356 15 8 4.8688 -3.5966 5.8686 16 7 5.9421 -3.7458 7.8046 17 6 5.6490 -5.0807 7.9120 18 1 5.0753 -5.5714 7.1398 19 6 6.0909 -5.8026 9.0140 20 7 6.7903 -5.2058 9.9530 21 14 5.6922 -7.6217 9.1600 22 1 6.2675 -8.3492 8.0002 23 1 6.2737 -8.1566 10.4173 24 1 4.2187 -7.8055 9.1781 25 6 5.7769 -1.7770 4.2053 26 6 5.2736 -1.1087 2.9238 27 1 5.6341 -0.0809 2.8836 28 8 5.7575 -1.8289 1.7884 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8103 0.2387 1.2839 33 1 2.1435 -0.4315 4.1928 34 1 3.5605 0.6460 4.1489 35 1 3.4456 -0.5623 6.3064 36 1 3.4556 -2.1177 5.4414 37 1 6.9183 -1.4442 6.6042 38 1 5.4143 -1.0437 7.4680 39 1 6.4583 -3.3052 8.4978 40 1 7.0991 -5.7099 10.7221 41 1 6.8668 -1.7615 4.2189 42 1 5.4281 -2.8091 4.2378 43 1 6.7218 -1.8683 1.7294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099618143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:19 Heat of formation + Delta-G solvation = -210.835517 kcal Electronic energy + Delta-G solvation = -30056.570387 eV Core-core repulsion = 25386.744609 eV Total energy + Delta-G solvation = -4669.825778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.50428 -47.50070 -40.40366 -39.31738 -37.87125 -35.89495 -35.01399 -33.90482 -32.05303 -31.56214 -31.20217 -29.56466 -27.38880 -25.41016 -24.29421 -23.13066 -22.37492 -20.88714 -20.22574 -19.36000 -18.72119 -18.07663 -17.91884 -17.33877 -17.09714 -16.21092 -16.12399 -15.67682 -15.26491 -14.91284 -14.79207 -14.55522 -14.31591 -14.08018 -13.86499 -13.82208 -13.69886 -13.58957 -13.48724 -13.00985 -12.92530 -12.72275 -12.56900 -12.30063 -12.22968 -11.97488 -11.56174 -11.34483 -11.22841 -11.03690 -10.79096 -10.58702 -10.50088 -10.30611 -10.17442 -9.92883 -9.51669 -9.34067 -9.31537 -8.06452 -7.53826 -6.51153 -3.92643 1.94166 2.37846 3.13243 3.20677 3.25112 3.40590 3.65898 3.74686 3.89943 4.09951 4.14035 4.21775 4.31356 4.72137 4.90511 5.01899 5.04898 5.10301 5.18542 5.19569 5.30166 5.36915 5.49366 5.53047 5.67979 5.79286 5.88461 5.96177 6.02370 6.07458 6.11685 6.21198 6.46986 6.61645 7.02048 7.16706 7.24068 7.46046 7.59786 7.66537 7.94725 8.49012 9.07061 9.42195 9.92432 10.65155 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.021246 B = 0.002510 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.592045 B =11152.088211 C =11562.007829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.281 3.719 3 F -0.191 7.191 4 F -0.182 7.182 5 C 0.485 3.515 6 O -0.500 6.500 7 N -0.696 5.696 8 C 0.152 3.848 9 H 0.101 0.899 10 C -0.118 4.118 11 C 0.041 3.959 12 N -0.511 5.511 13 C 0.042 3.958 14 C 0.402 3.598 15 O -0.593 6.593 16 N -0.553 5.553 17 C -0.304 4.304 18 H 0.103 0.897 19 C 0.025 3.975 20 N -0.898 5.898 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.273 1.273 25 C 0.004 3.996 26 C 0.106 3.894 27 H 0.063 0.937 28 O -0.563 6.563 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.406 0.594 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.393 0.607 40 H 0.274 0.726 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 14.782 -14.827 21.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.241 3.759 3 F -0.172 7.172 4 F -0.163 7.163 5 C 0.265 3.735 6 O -0.374 6.374 7 N -0.346 5.346 8 C 0.048 3.952 9 H 0.119 0.881 10 C -0.157 4.157 11 C -0.087 4.087 12 N -0.235 5.235 13 C -0.090 4.090 14 C 0.188 3.812 15 O -0.481 6.481 16 N -0.188 5.188 17 C -0.434 4.434 18 H 0.120 0.880 19 C -0.177 4.177 20 N -0.538 5.538 21 Si 0.757 3.243 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.125 4.125 26 C 0.046 3.954 27 H 0.081 0.919 28 O -0.367 6.367 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.241 0.759 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.227 0.773 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -6.302 14.164 -14.999 21.571 hybrid contribution 1.073 -0.980 0.518 1.542 sum -5.229 13.184 -14.482 20.270 Atomic orbital electron populations 1.22636 0.88834 1.06897 1.05632 1.21412 0.95879 0.75504 0.83059 1.93052 1.90510 1.36908 1.96708 1.93097 1.90519 1.80762 1.51892 1.20682 0.83105 0.84104 0.85598 1.90813 1.55756 1.32028 1.58819 1.45966 1.16477 1.42517 1.29662 1.21217 0.92296 0.98276 0.83386 0.88075 1.21903 1.00828 0.99884 0.93110 1.22226 0.87699 1.01976 0.96812 1.62436 1.07162 1.52245 1.01659 1.22033 1.01033 0.92805 0.93087 1.21056 0.86075 0.89416 0.84637 1.90410 1.44907 1.71499 1.41243 1.42044 1.47163 1.09906 1.19699 1.19677 1.32577 0.84534 1.06588 0.87953 1.25296 0.96411 1.00685 0.95325 1.69598 1.36219 1.37558 1.10439 0.85916 0.78942 0.81813 0.77584 1.19833 1.20870 1.19807 1.23071 0.99653 1.00804 0.88938 1.21973 0.92513 0.94872 0.86016 0.91933 1.86539 1.26782 1.77924 1.45492 0.88745 0.89192 0.87969 0.75930 0.90546 0.91021 0.90770 0.90767 0.89165 0.89069 0.77345 0.91643 0.91075 0.88332 0.77270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.92 37.16 0.33 -1.09 16 2 C 0.28 2.89 2.47 -27.88 -0.07 2.82 16 3 F -0.19 -1.84 16.51 2.25 0.04 -1.80 16 4 F -0.18 -2.09 17.05 2.25 0.04 -2.05 16 5 C 0.48 6.23 7.20 -10.98 -0.08 6.15 16 6 O -0.50 -7.97 15.76 5.56 0.09 -7.89 16 7 N -0.70 -8.31 4.93 -53.68 -0.26 -8.57 16 8 C 0.15 2.10 2.20 -67.80 -0.15 1.96 16 9 H 0.10 1.77 7.59 -51.93 -0.39 1.38 16 10 C -0.12 -1.55 5.67 -26.65 -0.15 -1.70 16 11 C 0.04 0.64 5.09 -3.83 -0.02 0.62 16 12 N -0.51 -7.75 4.86 -236.12 -1.15 -8.90 16 13 C 0.04 0.69 5.86 -4.98 -0.03 0.66 16 14 C 0.40 8.82 7.20 -10.99 -0.08 8.74 16 15 O -0.59 -14.71 11.20 5.54 0.06 -14.65 16 16 N -0.55 -13.40 5.29 -10.96 -0.06 -13.46 16 17 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 18 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 19 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 20 N -0.90 -23.83 13.05 55.50 0.72 -23.11 16 21 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 C 0.00 0.06 4.60 -3.83 -0.02 0.04 16 26 C 0.11 1.35 3.14 -26.65 -0.08 1.27 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 O -0.56 -7.07 13.23 -35.23 -0.47 -7.54 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.10 0.84 7.87 -51.93 -0.41 0.43 16 32 H 0.41 3.98 8.16 -40.82 -0.33 3.65 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.05 8.06 -51.93 -0.42 0.64 16 36 H 0.07 1.43 6.00 -51.93 -0.31 1.12 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 1.35 8.06 -51.93 -0.42 0.93 16 39 H 0.39 9.13 7.90 -40.82 -0.32 8.80 16 40 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 42 H 0.10 1.95 5.36 -51.93 -0.28 1.67 16 43 H 0.38 3.20 9.08 45.56 0.41 3.61 16 LS Contribution 360.79 15.07 5.44 5.44 Total: -1.00 -31.74 360.79 -6.10 -37.84 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -4.94 Total: 17.33 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -0.59 Total: 11.66 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.75 Total: -54.04 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.32 Total: -30.08 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.08 Total: -3.85 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.74 -6.10 -37.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099618143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.999 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds