Wall clock time and date at job start Tue Mar 31 2020 19:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39901 * 109.47141 * 2 1 4 4 F 1.39905 * 109.47541 * 239.99868 * 2 1 3 5 5 C 1.50702 * 109.47077 * 119.99960 * 2 1 3 6 6 O 1.21276 * 119.99744 * 25.00379 * 5 2 1 7 7 N 1.34777 * 119.99898 * 205.00065 * 5 2 1 8 8 C 1.46498 * 119.99817 * 179.97438 * 7 5 2 9 9 H 1.09000 * 109.57476 * 35.16075 * 8 7 5 10 10 C 1.53123 * 109.52509 * 275.00196 * 8 7 5 11 11 C 1.53036 * 109.27788 * 182.44210 * 10 8 7 12 12 N 1.46846 * 109.52384 * 59.18000 * 11 10 8 13 13 C 1.46903 * 110.99717 * 174.15896 * 12 11 10 14 14 C 1.50695 * 109.47089 * 66.04674 * 13 12 11 15 15 O 1.21300 * 120.00132 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00085 * 179.97438 * 14 13 12 17 17 C 1.37097 * 120.00159 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00100 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99985 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00002 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99941 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47139 * 59.99752 * 21 19 17 23 23 H 1.48499 * 109.47142 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46954 * 299.99808 * 21 19 17 25 25 C 1.46842 * 111.19700 * 298.25435 * 12 11 10 26 26 C 1.53041 * 109.52407 * 61.74724 * 25 12 11 27 27 H 1.08992 * 109.50537 * 60.79770 * 26 25 12 28 28 O 1.42900 * 109.50505 * 180.87834 * 26 25 12 29 29 H 1.08991 * 109.47335 * 299.99893 * 1 2 3 30 30 H 1.09007 * 109.46762 * 60.00511 * 1 2 3 31 31 H 1.09005 * 109.46998 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00183 * 0.02562 * 7 5 2 33 33 H 1.09000 * 109.50367 * 62.49755 * 10 8 7 34 34 H 1.09006 * 109.50264 * 302.38094 * 10 8 7 35 35 H 1.08999 * 109.46075 * 179.19317 * 11 10 8 36 36 H 1.08998 * 109.46309 * 299.16289 * 11 10 8 37 37 H 1.09007 * 109.46443 * 186.04380 * 13 12 11 38 38 H 1.08994 * 109.47048 * 306.04358 * 13 12 11 39 39 H 0.97003 * 119.99880 * 359.97438 * 16 14 13 40 40 H 0.97000 * 120.00009 * 180.02562 * 20 19 17 41 41 H 1.09006 * 109.46447 * 181.75636 * 25 12 11 42 42 H 1.08994 * 109.46873 * 301.72670 * 25 12 11 43 43 H 0.96696 * 113.99846 * 299.99875 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2305 6 8 1.3370 -1.5393 1.7784 7 7 3.2543 -0.4246 1.7220 8 6 3.7424 -1.1148 2.9185 9 1 3.3821 -2.1435 2.9191 10 6 3.2326 -0.3933 4.1692 11 6 3.7952 -1.0823 5.4145 12 7 5.2627 -1.0496 5.3727 13 6 5.8366 -1.5784 6.6173 14 6 5.5139 -3.0456 6.7356 15 8 4.8688 -3.5966 5.8686 16 7 5.9421 -3.7458 7.8046 17 6 5.6490 -5.0807 7.9120 18 1 5.0753 -5.5714 7.1398 19 6 6.0909 -5.8026 9.0140 20 7 6.7903 -5.2058 9.9530 21 14 5.6922 -7.6217 9.1600 22 1 6.2675 -8.3492 8.0002 23 1 6.2737 -8.1566 10.4173 24 1 4.2187 -7.8055 9.1781 25 6 5.7769 -1.7770 4.2053 26 6 5.2736 -1.1087 2.9238 27 1 5.6341 -0.0809 2.8836 28 8 5.7575 -1.8289 1.7884 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8103 0.2387 1.2839 33 1 2.1435 -0.4315 4.1928 34 1 3.5605 0.6460 4.1489 35 1 3.4456 -0.5623 6.3064 36 1 3.4556 -2.1177 5.4414 37 1 6.9183 -1.4442 6.6042 38 1 5.4143 -1.0437 7.4680 39 1 6.4583 -3.3052 8.4978 40 1 7.0991 -5.7099 10.7221 41 1 6.8668 -1.7615 4.2189 42 1 5.4281 -2.8091 4.2378 43 1 6.7218 -1.8683 1.7294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099618143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:19 Heat of formation + Delta-G solvation = -238.815468 kcal Electronic energy + Delta-G solvation = -30057.783688 eV Core-core repulsion = 25386.744609 eV Total energy + Delta-G solvation = -4671.039080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.34137 -48.33599 -41.57615 -40.69873 -39.28401 -37.14726 -36.22822 -35.70987 -33.40557 -32.97128 -32.34299 -30.74037 -28.79642 -26.82200 -25.65859 -24.27228 -23.59263 -21.89799 -21.46084 -21.01638 -19.95707 -19.61990 -18.91412 -18.37802 -18.06020 -17.83173 -17.17435 -16.84057 -16.53193 -16.46846 -16.02932 -15.92997 -15.67457 -15.36142 -15.23977 -15.08229 -14.83141 -14.65201 -14.54476 -14.11927 -13.84615 -13.62293 -13.54283 -13.51696 -13.38171 -13.27180 -13.09936 -12.98855 -12.52173 -12.47433 -12.27115 -12.17022 -12.15938 -11.69477 -11.47864 -11.20035 -10.99623 -10.95263 -10.41274 -10.01766 -9.09368 -8.49320 -5.98816 0.91977 1.34747 1.38043 1.41964 1.48195 1.99390 2.26234 2.54670 2.77215 2.84563 3.12903 3.17048 3.24289 3.35569 3.43207 3.63523 3.93277 3.96462 4.12162 4.31977 4.35730 4.37680 4.43901 4.49570 4.55292 4.65798 4.66784 4.78478 4.82415 4.91025 4.93113 5.08924 5.15299 5.29510 5.39133 5.80962 5.95609 5.99190 6.05424 6.56157 6.69552 6.80046 7.09247 7.52648 8.08358 8.65824 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.021246 B = 0.002510 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.592045 B =11152.088211 C =11562.007829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.289 3.711 3 F -0.183 7.183 4 F -0.189 7.189 5 C 0.479 3.521 6 O -0.538 6.538 7 N -0.685 5.685 8 C 0.153 3.847 9 H 0.053 0.947 10 C -0.106 4.106 11 C 0.042 3.958 12 N -0.491 5.491 13 C 0.050 3.950 14 C 0.404 3.596 15 O -0.624 6.624 16 N -0.568 5.568 17 C -0.334 4.334 18 H 0.075 0.925 19 C -0.009 4.009 20 N -0.916 5.916 21 Si 0.988 3.012 22 H -0.274 1.274 23 H -0.268 1.268 24 H -0.274 1.274 25 C 0.005 3.995 26 C 0.118 3.882 27 H 0.098 0.902 28 O -0.577 6.577 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.419 0.581 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.026 0.974 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.089 0.911 42 H 0.048 0.952 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 17.125 -15.456 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.250 3.750 3 F -0.164 7.164 4 F -0.170 7.170 5 C 0.260 3.740 6 O -0.415 6.415 7 N -0.336 5.336 8 C 0.048 3.952 9 H 0.071 0.929 10 C -0.145 4.145 11 C -0.086 4.086 12 N -0.214 5.214 13 C -0.082 4.082 14 C 0.192 3.808 15 O -0.512 6.512 16 N -0.205 5.205 17 C -0.464 4.464 18 H 0.093 0.907 19 C -0.210 4.210 20 N -0.557 5.557 21 Si 0.812 3.188 22 H -0.199 1.199 23 H -0.193 1.193 24 H -0.200 1.200 25 C -0.124 4.124 26 C 0.059 3.941 27 H 0.116 0.884 28 O -0.385 6.385 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.113 0.887 32 H 0.257 0.743 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.067 0.933 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -5.693 16.547 -15.652 23.477 hybrid contribution 0.897 -1.678 0.623 2.002 sum -4.796 14.869 -15.029 21.678 Atomic orbital electron populations 1.22702 0.86738 1.06994 1.07368 1.21347 0.97073 0.75256 0.81367 1.93069 1.90595 1.36161 1.96578 1.93087 1.90771 1.81051 1.52053 1.21233 0.82892 0.83689 0.86180 1.90800 1.56797 1.33694 1.60178 1.45854 1.16423 1.42288 1.29037 1.21035 0.93367 0.96164 0.84619 0.92851 1.21798 1.00408 1.00894 0.91399 1.22203 0.87918 0.99674 0.98855 1.62547 1.06817 1.50876 1.01171 1.22176 1.02963 0.88433 0.94606 1.22231 0.83982 0.91616 0.82997 1.90444 1.45629 1.73033 1.42084 1.42109 1.48345 1.09263 1.20760 1.19569 1.33784 0.86298 1.06776 0.90741 1.25976 0.96050 1.04248 0.94710 1.69648 1.36544 1.38804 1.10685 0.85068 0.78521 0.77319 0.77928 1.19892 1.19273 1.19975 1.23034 1.00634 0.98351 0.90367 1.21863 0.91428 0.96157 0.84681 0.88394 1.86510 1.28762 1.78157 1.45071 0.87842 0.86649 0.88716 0.74327 0.91087 0.87996 0.89186 0.95517 0.86471 0.86642 0.76879 0.91209 0.89310 0.93339 0.75075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 8.92 71.98 0.64 -1.89 16 2 C 0.29 5.53 2.47 29.85 0.07 5.60 16 3 F -0.18 -3.08 16.51 44.97 0.74 -2.34 16 4 F -0.19 -4.10 17.05 44.97 0.77 -3.33 16 5 C 0.48 12.10 7.20 87.66 0.63 12.73 16 6 O -0.54 -17.67 15.76 -3.02 -0.05 -17.71 16 7 N -0.69 -15.58 4.93 -442.15 -2.18 -17.76 16 8 C 0.15 4.20 2.20 45.07 0.10 4.30 16 9 H 0.05 2.00 7.59 -2.39 -0.02 1.98 16 10 C -0.11 -2.66 5.67 30.65 0.17 -2.49 16 11 C 0.04 1.28 5.09 86.33 0.44 1.72 16 12 N -0.49 -14.08 4.86 -900.95 -4.38 -18.46 16 13 C 0.05 1.55 5.86 85.55 0.50 2.05 16 14 C 0.40 18.06 7.20 87.66 0.63 18.70 16 15 O -0.62 -32.51 11.20 -3.09 -0.03 -32.55 16 16 N -0.57 -28.16 5.29 -306.99 -1.62 -29.78 16 17 C -0.33 -18.75 9.68 84.04 0.81 -17.93 16 18 H 0.07 4.50 7.16 -2.91 -0.02 4.48 16 19 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 20 N -0.92 -48.74 13.05 21.66 0.28 -48.45 16 21 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 C 0.01 0.15 4.60 86.33 0.40 0.55 16 26 C 0.12 2.82 3.14 30.65 0.10 2.92 16 27 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 28 O -0.58 -13.78 13.23 -148.98 -1.97 -15.75 16 29 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.09 1.50 7.87 -2.38 -0.02 1.48 16 32 H 0.42 7.21 8.16 -92.71 -0.76 6.45 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.09 2.43 8.06 -2.39 -0.02 2.41 16 36 H 0.03 1.08 6.00 -2.39 -0.01 1.07 16 37 H 0.12 3.11 8.14 -2.38 -0.02 3.09 16 38 H 0.12 3.12 8.06 -2.39 -0.02 3.10 16 39 H 0.40 18.62 7.90 -92.71 -0.73 17.89 16 40 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 41 H 0.09 2.30 8.12 -2.38 -0.02 2.28 16 42 H 0.05 1.99 5.36 -2.39 -0.01 1.98 16 43 H 0.40 5.93 9.08 -74.06 -0.67 5.26 16 Total: -1.00 -72.56 360.79 -2.52 -75.07 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: -1.07 Total: 39.83 kcal Atomic # 6 Polarization: 21.26 SS G_CDS: 4.96 Total: 26.22 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -7.90 Total: -114.45 kcal Atomic # 8 Polarization: -63.96 SS G_CDS: -2.05 Total: -66.01 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 1.51 Total: -5.67 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -72.56 -2.52 -75.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099618143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.741 kcal (2) G-P(sol) polarization free energy of solvation -72.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds