Wall clock time and date at job start Tue Mar 31 2020 19:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.30553 * 2 1 4 4 C 1.54393 * 110.34051 * 237.70931 * 2 1 3 5 5 N 1.48139 * 104.62068 * 265.00124 * 4 2 1 6 6 C 1.34773 * 127.83840 * 140.41359 * 5 4 2 7 7 O 1.21635 * 119.99731 * 179.97438 * 6 5 4 8 8 C 1.47261 * 120.00259 * 359.97330 * 6 5 4 9 9 N 1.33562 * 123.14122 * 359.70927 * 8 6 5 10 10 C 1.28641 * 115.76561 * 179.83202 * 9 8 6 11 11 S 1.70765 * 110.56315 * 0.41802 * 10 9 8 12 12 C 1.35210 * 123.14252 * 179.97438 * 8 6 5 13 13 C 1.50697 * 125.58750 * 359.96585 * 12 8 6 14 14 C 1.52993 * 117.50022 * 188.74550 * 13 12 8 15 15 C 1.53001 * 117.49883 * 120.08212 * 13 12 8 16 16 C 1.48315 * 104.38933 * 320.47276 * 5 4 2 17 17 C 1.54283 * 110.34028 * 122.17943 * 2 1 3 18 18 H 1.08997 * 110.34370 * 359.88770 * 17 2 1 19 19 C 1.53004 * 110.34155 * 237.73765 * 17 2 1 20 20 N 1.46499 * 109.47198 * 176.47418 * 19 17 2 21 21 C 1.36939 * 119.99933 * 180.27608 * 20 19 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 19 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 19 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47201 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47080 * 120.00466 * 25 23 21 28 28 H 1.48506 * 109.47018 * 240.00565 * 25 23 21 29 29 H 1.09003 * 109.47026 * 297.82849 * 1 2 3 30 30 H 1.09009 * 109.47071 * 57.82024 * 1 2 3 31 31 H 1.08992 * 109.47525 * 177.82134 * 1 2 3 32 32 H 1.09004 * 110.40591 * 23.78539 * 4 2 1 33 33 H 1.08999 * 110.40518 * 146.21099 * 4 2 1 34 34 H 1.08007 * 124.72032 * 180.15400 * 10 9 8 35 35 H 1.08997 * 115.54984 * 334.41933 * 13 12 8 36 36 H 1.09001 * 117.50073 * 359.97438 * 14 13 12 37 37 H 1.08994 * 117.49974 * 145.02173 * 14 13 12 38 38 H 1.08999 * 117.50005 * 214.97774 * 15 13 12 39 39 H 1.08998 * 117.49943 * 359.97438 * 15 13 12 40 40 H 1.08998 * 110.38541 * 280.73226 * 16 5 4 41 41 H 1.09004 * 110.50344 * 158.25046 * 16 5 4 42 42 H 1.09009 * 109.46730 * 56.47206 * 19 17 2 43 43 H 1.08998 * 109.46846 * 296.47750 * 19 17 2 44 44 H 0.97001 * 119.99790 * 359.97438 * 20 19 17 45 45 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7734 -1.2238 5 7 2.3138 -2.1446 -0.7206 6 6 2.0771 -3.3119 -1.3514 7 8 2.3369 -4.3646 -0.8002 8 6 1.5040 -3.3128 -2.7079 9 7 1.1900 -2.1954 -3.3687 10 6 0.7010 -2.3612 -4.5470 11 16 0.5862 -4.0236 -4.9202 12 6 1.2416 -4.4451 -3.3987 13 6 1.4864 -5.8487 -2.9077 14 6 1.3151 -6.9889 -3.9133 15 6 0.2786 -6.7823 -2.8060 16 6 2.8795 -1.9432 0.6355 17 6 2.0663 -0.7704 1.2244 18 1 1.2398 -1.1471 1.8269 19 6 2.9692 0.1325 2.0673 20 7 3.3995 -0.5900 3.2668 21 6 4.2152 0.0234 4.1799 22 1 4.5448 1.0383 4.0134 23 6 4.6182 -0.6592 5.3194 24 7 4.2167 -1.8963 5.5220 25 14 5.7314 0.1772 6.5645 26 1 6.0383 1.5561 6.1065 27 1 5.0467 0.2343 7.8810 28 1 6.9939 -0.5936 6.6962 29 1 -0.3633 0.4798 0.9088 30 1 -0.3634 0.5474 -0.8699 31 1 -0.3634 -1.0268 -0.0391 32 1 1.3222 -0.7890 -2.0198 33 1 2.9949 -0.3258 -1.5790 34 1 0.4005 -1.5605 -5.2066 35 1 2.2685 -5.9539 -2.1559 36 1 1.0249 -6.7239 -4.9300 37 1 1.9843 -7.8444 -3.8229 38 1 0.2663 -7.5021 -1.9876 39 1 -0.6932 -6.3813 -3.0939 40 1 3.9351 -1.6794 0.5713 41 1 2.7470 -2.8396 1.2415 42 1 2.4180 1.0264 2.3596 43 1 3.8433 0.4196 1.4828 44 1 3.1031 -1.5014 3.4165 45 1 4.4986 -2.3733 6.3181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106663452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:28 Heat of formation + Delta-G solvation = 55.585588 kcal Electronic energy + Delta-G solvation = -26592.691107 eV Core-core repulsion = 22931.400616 eV Total energy + Delta-G solvation = -3661.290491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.82618 -39.18048 -37.77304 -37.33428 -34.56447 -32.60440 -31.32143 -30.75985 -29.13432 -26.81034 -26.28749 -25.01736 -23.43198 -22.77100 -22.38652 -21.92790 -20.95848 -19.64978 -19.05208 -18.32505 -17.05745 -16.52924 -16.19406 -15.92510 -15.34267 -15.08814 -14.68291 -14.47605 -14.42744 -14.17333 -13.72063 -13.37227 -13.13177 -13.01612 -12.83876 -12.53264 -12.34904 -12.22679 -11.92605 -11.84169 -11.57471 -11.34318 -11.22335 -11.10450 -10.85998 -10.81428 -10.53679 -10.42871 -10.22426 -10.01842 -9.85325 -9.66584 -9.63291 -9.58053 -9.14280 -8.84609 -8.46203 -6.88252 -5.72080 -3.01136 0.21643 0.87115 1.29307 1.80809 3.09986 3.29381 3.46311 3.51507 3.54072 3.61029 3.84667 4.17569 4.48202 4.58197 4.65989 4.67249 4.81517 4.88302 5.00690 5.09138 5.23899 5.27811 5.38258 5.52927 5.57191 5.61462 5.64551 5.70679 5.74861 5.75471 5.95146 5.99383 6.07490 6.11763 6.17135 6.21142 6.30618 6.35521 6.48082 6.64352 6.77595 6.91685 7.11401 7.70771 7.74089 8.23127 8.46331 9.57516 10.15298 10.49824 11.50715 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018618 B = 0.002642 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.572405 B =10596.867009 C =11674.781380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.102 4.102 3 H 0.087 0.913 4 C 0.095 3.905 5 N -0.603 5.603 6 C 0.609 3.391 7 O -0.533 6.533 8 C 0.008 3.992 9 N -0.430 5.430 10 C -0.010 4.010 11 S 0.196 5.804 12 C -0.148 4.148 13 C -0.088 4.088 14 C -0.177 4.177 15 C -0.159 4.159 16 C 0.116 3.884 17 C -0.103 4.103 18 H 0.081 0.919 19 C 0.164 3.836 20 N -0.733 5.733 21 C -0.239 4.239 22 H 0.071 0.929 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.205 0.795 35 H 0.150 0.850 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.023 0.977 43 H 0.021 0.979 44 H 0.384 0.616 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.185 -4.212 -26.792 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 H 0.105 0.895 4 C -0.028 4.028 5 N -0.334 5.334 6 C 0.395 3.605 7 O -0.411 6.411 8 C -0.125 4.125 9 N -0.144 5.144 10 C -0.309 4.309 11 S 0.452 5.548 12 C -0.272 4.272 13 C -0.108 4.108 14 C -0.215 4.215 15 C -0.197 4.197 16 C -0.005 4.005 17 C -0.123 4.123 18 H 0.099 0.901 19 C 0.036 3.964 20 N -0.378 5.378 21 C -0.370 4.370 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.222 0.778 35 H 0.167 0.833 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.218 0.782 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.236 -4.663 -27.127 29.730 hybrid contribution 0.912 0.444 1.655 1.941 sum -10.324 -4.219 -25.472 27.807 Atomic orbital electron populations 1.21788 0.94675 1.01506 1.01471 1.22134 0.96077 0.99657 0.94336 0.89499 1.22906 1.01798 0.80540 0.97565 1.48807 1.61243 1.05508 1.17844 1.16535 0.78253 0.82774 0.82961 1.90772 1.53954 1.30268 1.66106 1.20314 1.07260 0.87036 0.97939 1.67042 1.11944 1.29487 1.05903 1.28427 1.04861 1.00287 0.97320 1.82763 1.55713 1.03033 1.13273 1.24798 1.04199 0.99670 0.98515 1.20736 1.03472 0.83608 1.03030 1.23169 1.03298 1.00194 0.94845 1.23088 0.93564 1.01764 1.01263 1.22526 0.97558 0.99251 0.81192 1.22393 0.98779 0.95478 0.95656 0.90061 1.20723 0.94263 0.93375 0.88067 1.42397 1.58877 1.15424 1.21072 1.19260 1.21323 0.97214 0.99215 0.91148 1.24750 1.01227 0.96364 0.98693 1.69678 1.49343 1.10450 1.28559 0.86126 0.80217 0.78411 0.81490 1.20588 1.21914 1.21895 0.92329 0.92883 0.93076 0.86892 0.91619 0.77848 0.83253 0.88745 0.87539 0.87535 0.88655 0.90320 0.89696 0.95967 0.96106 0.78221 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.90 37.16 0.33 -1.33 16 2 C -0.10 -1.37 3.31 -89.22 -0.30 -1.66 16 3 H 0.09 1.08 7.71 -51.93 -0.40 0.68 16 4 C 0.09 1.26 6.16 -2.41 -0.01 1.25 16 5 N -0.60 -9.65 3.32 -170.49 -0.57 -10.21 16 6 C 0.61 10.15 7.89 -12.60 -0.10 10.05 16 7 O -0.53 -10.18 14.43 5.25 0.08 -10.11 16 8 C 0.01 0.11 6.64 -84.53 -0.56 -0.45 16 9 N -0.43 -4.90 7.32 -12.36 -0.09 -4.99 16 10 C -0.01 -0.08 12.17 51.43 0.63 0.55 16 11 S 0.20 1.41 21.77 -107.50 -2.34 -0.93 16 12 C -0.15 -1.68 6.04 -35.39 -0.21 -1.89 16 13 C -0.09 -0.98 5.40 -91.78 -0.50 -1.47 16 14 C -0.18 -1.39 10.03 -26.69 -0.27 -1.65 16 15 C -0.16 -1.41 10.24 -26.69 -0.27 -1.68 16 16 C 0.12 2.07 6.34 -2.32 -0.01 2.05 16 17 C -0.10 -1.74 2.76 -89.22 -0.25 -1.99 16 18 H 0.08 1.46 7.71 -51.93 -0.40 1.06 16 19 C 0.16 3.29 5.37 -4.04 -0.02 3.27 16 20 N -0.73 -18.82 5.46 -59.90 -0.33 -19.15 16 21 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 25 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.11 1.41 5.01 -51.93 -0.26 1.15 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.20 0.79 8.06 -52.48 -0.42 0.36 16 35 H 0.15 2.04 6.17 -51.93 -0.32 1.72 16 36 H 0.09 0.61 7.28 -51.93 -0.38 0.24 16 37 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.46 7.78 -51.93 -0.40 1.06 16 41 H 0.08 1.68 7.89 -51.93 -0.41 1.27 16 42 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.02 0.42 8.02 -51.93 -0.42 0.01 16 44 H 0.38 10.45 7.56 -40.82 -0.31 10.14 16 45 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 377.43 15.07 5.69 5.69 Total: -1.00 -33.75 377.43 -10.30 -44.05 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.65 Total: 8.34 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -1.79 Total: -2.40 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -0.26 Total: -62.41 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.34 Total: -0.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.75 -10.30 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106663452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.640 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds