Wall clock time and date at job start Tue Mar 31 2020 19:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.30553 * 2 1 4 4 C 1.54393 * 110.34051 * 237.70931 * 2 1 3 5 5 N 1.48139 * 104.62068 * 265.00124 * 4 2 1 6 6 C 1.34773 * 127.83840 * 140.41359 * 5 4 2 7 7 O 1.21635 * 119.99731 * 179.97438 * 6 5 4 8 8 C 1.47261 * 120.00259 * 359.97330 * 6 5 4 9 9 N 1.33562 * 123.14122 * 359.70927 * 8 6 5 10 10 C 1.28641 * 115.76561 * 179.83202 * 9 8 6 11 11 S 1.70765 * 110.56315 * 0.41802 * 10 9 8 12 12 C 1.35210 * 123.14252 * 179.97438 * 8 6 5 13 13 C 1.50697 * 125.58750 * 359.96585 * 12 8 6 14 14 C 1.52993 * 117.50022 * 188.74550 * 13 12 8 15 15 C 1.53001 * 117.49883 * 120.08212 * 13 12 8 16 16 C 1.48315 * 104.38933 * 320.47276 * 5 4 2 17 17 C 1.54283 * 110.34028 * 122.17943 * 2 1 3 18 18 H 1.08997 * 110.34370 * 359.88770 * 17 2 1 19 19 C 1.53004 * 110.34155 * 237.73765 * 17 2 1 20 20 N 1.46499 * 109.47198 * 176.47418 * 19 17 2 21 21 C 1.36939 * 119.99933 * 180.27608 * 20 19 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 19 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 19 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47201 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47080 * 120.00466 * 25 23 21 28 28 H 1.48506 * 109.47018 * 240.00565 * 25 23 21 29 29 H 1.09003 * 109.47026 * 297.82849 * 1 2 3 30 30 H 1.09009 * 109.47071 * 57.82024 * 1 2 3 31 31 H 1.08992 * 109.47525 * 177.82134 * 1 2 3 32 32 H 1.09004 * 110.40591 * 23.78539 * 4 2 1 33 33 H 1.08999 * 110.40518 * 146.21099 * 4 2 1 34 34 H 1.08007 * 124.72032 * 180.15400 * 10 9 8 35 35 H 1.08997 * 115.54984 * 334.41933 * 13 12 8 36 36 H 1.09001 * 117.50073 * 359.97438 * 14 13 12 37 37 H 1.08994 * 117.49974 * 145.02173 * 14 13 12 38 38 H 1.08999 * 117.50005 * 214.97774 * 15 13 12 39 39 H 1.08998 * 117.49943 * 359.97438 * 15 13 12 40 40 H 1.08998 * 110.38541 * 280.73226 * 16 5 4 41 41 H 1.09004 * 110.50344 * 158.25046 * 16 5 4 42 42 H 1.09009 * 109.46730 * 56.47206 * 19 17 2 43 43 H 1.08998 * 109.46846 * 296.47750 * 19 17 2 44 44 H 0.97001 * 119.99790 * 359.97438 * 20 19 17 45 45 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7734 -1.2238 5 7 2.3138 -2.1446 -0.7206 6 6 2.0771 -3.3119 -1.3514 7 8 2.3369 -4.3646 -0.8002 8 6 1.5040 -3.3128 -2.7079 9 7 1.1900 -2.1954 -3.3687 10 6 0.7010 -2.3612 -4.5470 11 16 0.5862 -4.0236 -4.9202 12 6 1.2416 -4.4451 -3.3987 13 6 1.4864 -5.8487 -2.9077 14 6 1.3151 -6.9889 -3.9133 15 6 0.2786 -6.7823 -2.8060 16 6 2.8795 -1.9432 0.6355 17 6 2.0663 -0.7704 1.2244 18 1 1.2398 -1.1471 1.8269 19 6 2.9692 0.1325 2.0673 20 7 3.3995 -0.5900 3.2668 21 6 4.2152 0.0234 4.1799 22 1 4.5448 1.0383 4.0134 23 6 4.6182 -0.6592 5.3194 24 7 4.2167 -1.8963 5.5220 25 14 5.7314 0.1772 6.5645 26 1 6.0383 1.5561 6.1065 27 1 5.0467 0.2343 7.8810 28 1 6.9939 -0.5936 6.6962 29 1 -0.3633 0.4798 0.9088 30 1 -0.3634 0.5474 -0.8699 31 1 -0.3634 -1.0268 -0.0391 32 1 1.3222 -0.7890 -2.0198 33 1 2.9949 -0.3258 -1.5790 34 1 0.4005 -1.5605 -5.2066 35 1 2.2685 -5.9539 -2.1559 36 1 1.0249 -6.7239 -4.9300 37 1 1.9843 -7.8444 -3.8229 38 1 0.2663 -7.5021 -1.9876 39 1 -0.6932 -6.3813 -3.0939 40 1 3.9351 -1.6794 0.5713 41 1 2.7470 -2.8396 1.2415 42 1 2.4180 1.0264 2.3596 43 1 3.8433 0.4196 1.4828 44 1 3.1031 -1.5014 3.4165 45 1 4.4986 -2.3733 6.3181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106663452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:28 Heat of formation + Delta-G solvation = 34.162376 kcal Electronic energy + Delta-G solvation = -26593.620087 eV Core-core repulsion = 22931.400616 eV Total energy + Delta-G solvation = -3662.219471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.82779 -40.29017 -38.93552 -38.17672 -36.44027 -34.09006 -33.02471 -31.60281 -30.72975 -28.03365 -27.42282 -26.33735 -25.11505 -23.54510 -23.25872 -22.99673 -22.25436 -20.99003 -20.14437 -19.24007 -18.96295 -17.47481 -17.26464 -17.22402 -16.59145 -16.32243 -16.01684 -15.62980 -15.40570 -15.27360 -15.10180 -14.95011 -14.68057 -14.26995 -14.12874 -13.78178 -13.45539 -13.16936 -13.11877 -12.97858 -12.82477 -12.67932 -12.55197 -12.47707 -12.10832 -12.10547 -11.99133 -11.80227 -11.67719 -11.57440 -11.46886 -10.99333 -10.94148 -10.52015 -10.25707 -10.02919 -9.65178 -9.01459 -7.95380 -5.25131 -0.54205 0.19712 0.60261 0.91827 1.46132 1.47628 1.57768 1.91691 2.21208 2.55208 2.86144 3.05299 3.37278 3.38724 3.53098 3.61620 3.74066 3.81827 3.97112 3.98591 4.14788 4.21078 4.26933 4.35381 4.48919 4.53409 4.53966 4.64112 4.66900 4.74945 4.83789 4.88323 4.88957 4.90945 5.03550 5.11558 5.13490 5.20207 5.21072 5.24658 5.33742 5.49126 5.54042 6.26068 6.33936 6.51854 7.00448 7.31923 8.07405 8.30134 9.28605 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018618 B = 0.002642 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.572405 B =10596.867009 C =11674.781380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.093 4.093 3 H 0.106 0.894 4 C 0.099 3.901 5 N -0.605 5.605 6 C 0.596 3.404 7 O -0.575 6.575 8 C -0.021 4.021 9 N -0.455 5.455 10 C -0.004 4.004 11 S 0.286 5.714 12 C -0.167 4.167 13 C -0.121 4.121 14 C -0.151 4.151 15 C -0.158 4.158 16 C 0.121 3.879 17 C -0.092 4.092 18 H 0.066 0.934 19 C 0.165 3.835 20 N -0.748 5.748 21 C -0.242 4.242 22 H 0.080 0.920 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.976 3.024 26 H -0.262 1.262 27 H -0.293 1.293 28 H -0.295 1.295 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.248 0.752 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.033 0.967 43 H 0.028 0.972 44 H 0.371 0.629 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.510 -2.434 -30.337 32.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.113 4.113 3 H 0.125 0.875 4 C -0.023 4.023 5 N -0.336 5.336 6 C 0.385 3.615 7 O -0.456 6.456 8 C -0.155 4.155 9 N -0.170 5.170 10 C -0.303 4.303 11 S 0.543 5.457 12 C -0.292 4.292 13 C -0.141 4.141 14 C -0.188 4.188 15 C -0.196 4.196 16 C -0.002 4.002 17 C -0.112 4.112 18 H 0.084 0.916 19 C 0.039 3.961 20 N -0.391 5.391 21 C -0.374 4.374 22 H 0.098 0.902 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.805 3.195 26 H -0.187 1.187 27 H -0.220 1.220 28 H -0.222 1.222 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.148 0.852 33 H 0.091 0.909 34 H 0.264 0.736 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.203 0.797 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.577 -2.830 -30.729 33.324 hybrid contribution 1.279 -0.159 2.598 2.900 sum -11.298 -2.988 -28.131 30.462 Atomic orbital electron populations 1.21742 0.93318 1.00974 1.02785 1.22151 0.97125 0.99927 0.92064 0.87545 1.23065 1.02677 0.78767 0.97765 1.48900 1.61035 1.06772 1.16933 1.17227 0.77732 0.82167 0.84393 1.90740 1.55663 1.31623 1.67576 1.19907 1.09860 0.88835 0.96893 1.66939 1.13732 1.28821 1.07460 1.29169 1.02469 1.02230 0.96423 1.82402 1.53050 1.01391 1.08847 1.25054 1.04044 0.99103 1.00953 1.20586 1.04022 0.85044 1.04478 1.23286 1.02005 0.98497 0.95037 1.23176 0.93634 1.00878 1.01915 1.22248 0.97262 0.98208 0.82477 1.22223 0.97435 0.94964 0.96537 0.91579 1.20876 0.94969 0.93689 0.86599 1.42649 1.58741 1.15211 1.22463 1.19705 1.20718 0.97513 0.99441 0.90203 1.25634 1.03395 0.97114 1.01041 1.69855 1.51217 1.12146 1.29117 0.85032 0.77784 0.78071 0.78631 1.18654 1.22039 1.22248 0.92376 0.90030 0.94663 0.85224 0.90889 0.73640 0.87122 0.86595 0.86650 0.87863 0.87463 0.91605 0.93165 0.94938 0.95436 0.79737 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.90 71.98 0.64 -2.31 16 2 C -0.09 -2.38 3.31 -9.89 -0.03 -2.41 16 3 H 0.11 2.36 7.71 -2.39 -0.02 2.34 16 4 C 0.10 2.55 6.16 86.54 0.53 3.08 16 5 N -0.61 -20.36 3.32 -811.56 -2.69 -23.05 16 6 C 0.60 21.25 7.89 86.62 0.68 21.93 16 7 O -0.58 -24.30 14.43 -4.14 -0.06 -24.36 16 8 C -0.02 -0.58 6.64 40.56 0.27 -0.31 16 9 N -0.46 -9.49 7.32 -193.03 -1.41 -10.91 16 10 C 0.00 -0.05 12.17 130.71 1.59 1.54 16 11 S 0.29 3.08 21.77 -56.49 -1.23 1.85 16 12 C -0.17 -3.67 6.04 24.99 0.15 -3.52 16 13 C -0.12 -2.75 5.40 -11.54 -0.06 -2.82 16 14 C -0.15 -2.13 10.03 30.62 0.31 -1.82 16 15 C -0.16 -2.73 10.24 30.62 0.31 -2.42 16 16 C 0.12 4.63 6.34 86.50 0.55 5.18 16 17 C -0.09 -3.19 2.76 -9.89 -0.03 -3.22 16 18 H 0.07 2.50 7.71 -2.39 -0.02 2.48 16 19 C 0.17 6.69 5.37 86.38 0.46 7.16 16 20 N -0.75 -39.58 5.46 -343.44 -1.87 -41.45 16 21 C -0.24 -13.89 9.99 84.03 0.84 -13.05 16 22 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 23 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 24 N -0.97 -62.16 13.06 21.65 0.28 -61.88 16 25 Si 0.98 47.50 29.55 68.60 2.03 49.53 16 26 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 28 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.13 2.98 5.01 -2.38 -0.01 2.97 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.25 0.50 8.06 -2.91 -0.02 0.48 16 35 H 0.11 3.39 6.17 -2.39 -0.01 3.38 16 36 H 0.12 1.11 7.28 -2.39 -0.02 1.09 16 37 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.07 2.64 7.78 -2.39 -0.02 2.62 16 41 H 0.05 2.23 7.89 -2.38 -0.02 2.21 16 42 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.03 1.10 8.02 -2.39 -0.02 1.08 16 44 H 0.37 21.32 7.56 -92.71 -0.70 20.62 16 45 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -78.36 377.43 2.04 -76.32 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.31 Total: 31.22 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 6.69 Total: 2.73 kcal Atomic # 7 Polarization: -131.59 SS G_CDS: -5.70 Total: -137.29 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.06 Total: -24.36 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.23 Total: 1.85 kcal Total: -78.36 2.04 -76.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106663452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.482 kcal (2) G-P(sol) polarization free energy of solvation -78.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds