Wall clock time and date at job start Tue Mar 31 2020 19:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.65707 * 2 1 4 4 C 1.54598 * 110.83049 * 236.75231 * 2 1 3 5 5 N 1.48116 * 103.42236 * 204.44680 * 4 2 1 6 6 C 1.34778 * 127.03291 * 219.28971 * 5 4 2 7 7 O 1.21678 * 120.00185 * 5.21171 * 6 5 4 8 8 C 1.46687 * 119.99791 * 184.93639 * 6 5 4 9 9 S 1.76214 * 126.12942 * 6.22834 * 8 6 5 10 10 C 1.70949 * 90.31428 * 179.97438 * 9 8 6 11 11 N 1.29433 * 110.38942 * 0.29966 * 10 9 8 12 12 C 1.30940 * 117.36273 * 359.76072 * 11 10 9 13 13 C 1.50699 * 122.90309 * 180.02562 * 12 11 10 14 14 C 1.53005 * 117.50107 * 8.58267 * 13 12 11 15 15 C 1.52997 * 60.00128 * 252.51158 * 14 13 12 16 16 C 1.47489 * 105.93311 * 39.02289 * 5 4 2 17 17 C 1.54001 * 107.07928 * 334.78382 * 16 5 4 18 18 H 1.09002 * 110.32829 * 120.30093 * 17 16 5 19 19 C 1.53010 * 110.32178 * 242.40462 * 17 16 5 20 20 N 1.46490 * 109.47188 * 293.55128 * 19 17 16 21 21 C 1.36944 * 119.99852 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99964 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00005 * 179.97438 * 21 20 19 24 24 N 1.31617 * 119.99750 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00086 * 359.97438 * 23 21 20 26 26 H 1.48511 * 109.46909 * 90.00000 * 25 23 21 27 27 H 1.48493 * 109.47267 * 209.99629 * 25 23 21 28 28 H 1.48503 * 109.47238 * 330.00242 * 25 23 21 29 29 H 1.08999 * 109.47110 * 296.81084 * 1 2 3 30 30 H 1.09007 * 109.46921 * 56.80491 * 1 2 3 31 31 H 1.08991 * 109.47689 * 176.80840 * 1 2 3 32 32 H 1.09007 * 110.61639 * 85.93828 * 4 2 1 33 33 H 1.08995 * 110.54811 * 322.93012 * 4 2 1 34 34 H 1.07999 * 124.80959 * 180.02562 * 10 9 8 35 35 H 1.08998 * 115.55492 * 154.29199 * 13 12 11 36 36 H 1.09007 * 117.49775 * 0.02562 * 14 13 12 37 37 H 1.08998 * 117.50219 * 145.01695 * 14 13 12 38 38 H 1.09003 * 117.49503 * 252.50839 * 15 14 13 39 39 H 1.09002 * 117.51999 * 107.48486 * 15 14 13 40 40 H 1.09000 * 109.90729 * 94.13600 * 16 5 4 41 41 H 1.08995 * 109.91709 * 215.22568 * 16 5 4 42 42 H 1.09003 * 109.46724 * 53.55535 * 19 17 16 43 43 H 1.08998 * 109.47024 * 173.54431 * 19 17 16 44 44 H 0.97000 * 120.00441 * 359.97438 * 20 19 17 45 45 H 0.96998 * 119.99783 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0798 -0.7922 -1.2084 5 7 3.4278 -1.2113 -0.7602 6 6 4.5537 -1.2498 -1.5001 7 8 4.5466 -0.8275 -2.6412 8 6 5.7893 -1.7951 -0.9276 9 16 5.9492 -2.5790 0.6425 10 6 7.6193 -2.8156 0.3647 11 7 7.9575 -2.3336 -0.7879 12 6 7.0147 -1.7811 -1.5093 13 6 7.2688 -1.1820 -2.8685 14 6 8.6463 -1.4093 -3.4945 15 6 8.2694 -0.0278 -2.9560 16 6 3.2874 -1.5717 0.6631 17 6 2.0775 -0.7916 1.2099 18 1 1.3217 -1.4806 1.5870 19 6 2.5200 0.1679 2.3167 20 7 2.9886 -0.6018 3.4716 21 6 3.4368 0.0476 4.5909 22 1 3.4451 1.1272 4.6220 23 6 3.8804 -0.6817 5.6856 24 7 4.3116 -0.0575 6.7611 25 14 3.8653 -2.5488 5.6322 26 1 5.1601 -3.0391 5.0948 27 1 3.6652 -3.0817 7.0037 28 1 2.7590 -3.0101 4.7555 29 1 -0.3633 0.4635 0.9172 30 1 -0.3633 0.5627 -0.8600 31 1 -0.3634 -1.0259 -0.0572 32 1 2.1487 -0.1519 -2.0879 33 1 1.4547 -1.6615 -1.4123 34 1 8.2973 -3.2950 1.0553 35 1 6.4095 -1.1548 -3.5385 36 1 9.3686 -1.9927 -2.9234 37 1 8.6933 -1.5321 -4.5765 38 1 8.0685 0.7584 -3.6838 39 1 8.7436 0.2985 -2.0303 40 1 3.1124 -2.6433 0.7591 41 1 4.1896 -1.2928 1.2074 42 1 3.3286 0.7992 1.9483 43 1 1.6779 0.7928 2.6139 44 1 2.9808 -1.5713 3.4440 45 1 4.6219 -0.5671 7.5259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106745377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:06 Heat of formation + Delta-G solvation = 56.369732 kcal Electronic energy + Delta-G solvation = -27052.621655 eV Core-core repulsion = 23391.365167 eV Total energy + Delta-G solvation = -3661.256488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63800 -39.84103 -37.88280 -36.52867 -34.85193 -33.20685 -31.69813 -30.73358 -29.52119 -27.24199 -26.00040 -25.45627 -23.20938 -22.91822 -22.38607 -21.50140 -20.70882 -20.22807 -18.64417 -18.28548 -17.66746 -16.71345 -16.31719 -16.00777 -15.37857 -15.10244 -14.67629 -14.51245 -14.41157 -14.24911 -14.05235 -13.85483 -13.15404 -13.06059 -12.81761 -12.71126 -12.41608 -12.35494 -11.95412 -11.69846 -11.58763 -11.56887 -11.45800 -11.12497 -10.88113 -10.82752 -10.64684 -10.49249 -10.39748 -10.20442 -10.04596 -9.67087 -9.64984 -9.53202 -9.01596 -8.95760 -8.60644 -7.32665 -5.83524 -3.20131 0.16259 1.14857 1.53650 2.30671 2.77796 3.03410 3.28012 3.29556 3.37907 3.87392 4.03910 4.26380 4.49459 4.51336 4.55897 4.71785 4.78024 4.83865 4.98315 5.10585 5.12735 5.23499 5.37486 5.39045 5.45298 5.46623 5.52994 5.59074 5.62403 5.64030 5.74206 5.75588 5.88304 5.94992 5.97929 6.03235 6.08705 6.09796 6.21094 6.28475 6.54082 6.64234 7.32757 7.53140 7.91637 7.97892 8.34784 9.12957 9.84828 10.03874 11.34870 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010433 B = 0.004480 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.095794 B = 6248.624142 C = 8133.606207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.088 0.912 4 C 0.113 3.887 5 N -0.616 5.616 6 C 0.620 3.380 7 O -0.529 6.529 8 C -0.297 4.297 9 S 0.205 5.795 10 C 0.017 3.983 11 N -0.477 5.477 12 C 0.174 3.826 13 C -0.097 4.097 14 C -0.163 4.163 15 C -0.158 4.158 16 C 0.089 3.911 17 C -0.103 4.103 18 H 0.090 0.910 19 C 0.165 3.835 20 N -0.756 5.756 21 C -0.245 4.245 22 H 0.090 0.910 23 C 0.007 3.993 24 N -0.932 5.932 25 Si 0.878 3.122 26 H -0.282 1.282 27 H -0.290 1.290 28 H -0.276 1.276 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.204 0.796 35 H 0.143 0.857 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.029 0.971 43 H 0.034 0.966 44 H 0.360 0.640 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 -5.441 -18.469 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.106 0.894 4 C -0.009 4.009 5 N -0.349 5.349 6 C 0.409 3.591 7 O -0.409 6.409 8 C -0.421 4.421 9 S 0.463 5.537 10 C -0.277 4.277 11 N -0.191 5.191 12 C 0.035 3.965 13 C -0.118 4.118 14 C -0.200 4.200 15 C -0.196 4.196 16 C -0.035 4.035 17 C -0.123 4.123 18 H 0.109 0.891 19 C 0.038 3.962 20 N -0.402 5.402 21 C -0.375 4.375 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.580 5.580 25 Si 0.708 3.292 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.202 1.202 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.221 0.779 35 H 0.161 0.839 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.047 0.953 43 H 0.052 0.948 44 H 0.192 0.808 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.163 -5.390 -18.192 18.975 hybrid contribution 0.329 -1.144 -0.202 1.207 sum 0.492 -6.534 -18.394 19.527 Atomic orbital electron populations 1.21728 0.93517 1.02073 1.02407 1.22240 0.96309 0.99938 0.93449 0.89388 1.22509 0.81556 0.98769 0.98075 1.48583 1.08433 1.66046 1.11828 1.16174 0.80446 0.77944 0.84542 1.90744 1.84001 1.48466 1.17642 1.25337 0.99402 1.16478 1.00874 1.84714 1.06362 1.49342 1.13301 1.28915 1.00388 1.01468 0.96961 1.66039 1.35226 1.12663 1.05134 1.19679 0.86024 0.94927 0.95873 1.20910 0.95720 1.02896 0.92250 1.22970 0.97242 0.99507 1.00329 1.22926 1.01762 0.91680 1.03235 1.22521 1.00773 0.99594 0.80574 1.22419 0.95979 0.98077 0.95783 0.89127 1.20707 0.96958 0.92649 0.85897 1.42717 1.78795 1.04180 1.14459 1.19039 1.34543 0.93181 0.90712 0.89190 1.24659 1.01038 0.97137 0.96066 1.69694 1.48862 1.34290 1.05154 0.86647 0.77859 0.87584 0.77130 1.20901 1.21603 1.20199 0.91584 0.92403 0.92423 0.89525 0.90746 0.77933 0.83947 0.87805 0.88563 0.88207 0.88769 0.91114 0.89052 0.95323 0.94803 0.80768 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.16 37.16 0.34 -0.92 16 2 C -0.10 -1.11 3.19 -88.93 -0.28 -1.39 16 3 H 0.09 1.04 7.86 -51.93 -0.41 0.64 16 4 C 0.11 1.28 6.54 -2.31 -0.02 1.27 16 5 N -0.62 -8.47 3.29 -171.51 -0.56 -9.04 16 6 C 0.62 9.60 7.84 -12.85 -0.10 9.50 16 7 O -0.53 -8.98 14.51 5.21 0.08 -8.91 16 8 C -0.30 -4.41 6.37 -37.10 -0.24 -4.65 16 9 S 0.21 2.71 19.10 -107.50 -2.05 0.65 16 10 C 0.02 0.20 12.22 51.75 0.63 0.84 16 11 N -0.48 -6.67 9.80 -11.54 -0.11 -6.78 16 12 C 0.17 2.55 6.42 -83.90 -0.54 2.01 16 13 C -0.10 -1.30 5.50 -91.77 -0.50 -1.80 16 14 C -0.16 -1.78 10.08 -26.73 -0.27 -2.05 16 15 C -0.16 -1.83 10.23 -26.73 -0.27 -2.10 16 16 C 0.09 1.23 4.79 -2.98 -0.01 1.21 16 17 C -0.10 -1.39 2.65 -89.25 -0.24 -1.63 16 18 H 0.09 1.16 7.85 -51.93 -0.41 0.75 16 19 C 0.17 2.92 5.34 -4.04 -0.02 2.90 16 20 N -0.76 -16.58 5.14 -59.91 -0.31 -16.88 16 21 C -0.24 -6.61 10.47 -15.06 -0.16 -6.77 16 22 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 23 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -28.44 13.97 55.49 0.78 -27.66 16 25 Si 0.88 20.78 27.73 -169.99 -4.71 16.07 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 28 H -0.28 -6.03 6.52 56.52 0.37 -5.66 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.09 1.00 7.81 -51.93 -0.41 0.59 16 33 H 0.07 0.73 8.01 -51.93 -0.42 0.32 16 34 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.14 2.02 6.08 -51.93 -0.32 1.71 16 36 H 0.10 1.19 7.74 -51.92 -0.40 0.79 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 41 H 0.09 1.43 5.15 -40.94 -0.21 1.22 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.36 7.58 5.37 -40.82 -0.22 7.36 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -32.22 374.06 -9.64 -41.85 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.60 Total: 8.55 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.77 Total: -3.49 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.21 Total: -60.37 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.71 Total: 16.07 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.05 Total: 0.65 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.22 -9.64 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106745377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.225 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds