Wall clock time and date at job start Tue Mar 31 2020 19:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.65707 * 2 1 4 4 C 1.54598 * 110.83049 * 236.75231 * 2 1 3 5 5 N 1.48116 * 103.42236 * 204.44680 * 4 2 1 6 6 C 1.34778 * 127.03291 * 219.28971 * 5 4 2 7 7 O 1.21678 * 120.00185 * 5.21171 * 6 5 4 8 8 C 1.46687 * 119.99791 * 184.93639 * 6 5 4 9 9 S 1.76214 * 126.12942 * 6.22834 * 8 6 5 10 10 C 1.70949 * 90.31428 * 179.97438 * 9 8 6 11 11 N 1.29433 * 110.38942 * 0.29966 * 10 9 8 12 12 C 1.30940 * 117.36273 * 359.76072 * 11 10 9 13 13 C 1.50699 * 122.90309 * 180.02562 * 12 11 10 14 14 C 1.53005 * 117.50107 * 8.58267 * 13 12 11 15 15 C 1.52997 * 60.00128 * 252.51158 * 14 13 12 16 16 C 1.47489 * 105.93311 * 39.02289 * 5 4 2 17 17 C 1.54001 * 107.07928 * 334.78382 * 16 5 4 18 18 H 1.09002 * 110.32829 * 120.30093 * 17 16 5 19 19 C 1.53010 * 110.32178 * 242.40462 * 17 16 5 20 20 N 1.46490 * 109.47188 * 293.55128 * 19 17 16 21 21 C 1.36944 * 119.99852 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99964 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00005 * 179.97438 * 21 20 19 24 24 N 1.31617 * 119.99750 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00086 * 359.97438 * 23 21 20 26 26 H 1.48511 * 109.46909 * 90.00000 * 25 23 21 27 27 H 1.48493 * 109.47267 * 209.99629 * 25 23 21 28 28 H 1.48503 * 109.47238 * 330.00242 * 25 23 21 29 29 H 1.08999 * 109.47110 * 296.81084 * 1 2 3 30 30 H 1.09007 * 109.46921 * 56.80491 * 1 2 3 31 31 H 1.08991 * 109.47689 * 176.80840 * 1 2 3 32 32 H 1.09007 * 110.61639 * 85.93828 * 4 2 1 33 33 H 1.08995 * 110.54811 * 322.93012 * 4 2 1 34 34 H 1.07999 * 124.80959 * 180.02562 * 10 9 8 35 35 H 1.08998 * 115.55492 * 154.29199 * 13 12 11 36 36 H 1.09007 * 117.49775 * 0.02562 * 14 13 12 37 37 H 1.08998 * 117.50219 * 145.01695 * 14 13 12 38 38 H 1.09003 * 117.49503 * 252.50839 * 15 14 13 39 39 H 1.09002 * 117.51999 * 107.48486 * 15 14 13 40 40 H 1.09000 * 109.90729 * 94.13600 * 16 5 4 41 41 H 1.08995 * 109.91709 * 215.22568 * 16 5 4 42 42 H 1.09003 * 109.46724 * 53.55535 * 19 17 16 43 43 H 1.08998 * 109.47024 * 173.54431 * 19 17 16 44 44 H 0.97000 * 120.00441 * 359.97438 * 20 19 17 45 45 H 0.96998 * 119.99783 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0798 -0.7922 -1.2084 5 7 3.4278 -1.2113 -0.7602 6 6 4.5537 -1.2498 -1.5001 7 8 4.5466 -0.8275 -2.6412 8 6 5.7893 -1.7951 -0.9276 9 16 5.9492 -2.5790 0.6425 10 6 7.6193 -2.8156 0.3647 11 7 7.9575 -2.3336 -0.7879 12 6 7.0147 -1.7811 -1.5093 13 6 7.2688 -1.1820 -2.8685 14 6 8.6463 -1.4093 -3.4945 15 6 8.2694 -0.0278 -2.9560 16 6 3.2874 -1.5717 0.6631 17 6 2.0775 -0.7916 1.2099 18 1 1.3217 -1.4806 1.5870 19 6 2.5200 0.1679 2.3167 20 7 2.9886 -0.6018 3.4716 21 6 3.4368 0.0476 4.5909 22 1 3.4451 1.1272 4.6220 23 6 3.8804 -0.6817 5.6856 24 7 4.3116 -0.0575 6.7611 25 14 3.8653 -2.5488 5.6322 26 1 5.1601 -3.0391 5.0948 27 1 3.6652 -3.0817 7.0037 28 1 2.7590 -3.0101 4.7555 29 1 -0.3633 0.4635 0.9172 30 1 -0.3633 0.5627 -0.8600 31 1 -0.3634 -1.0259 -0.0572 32 1 2.1487 -0.1519 -2.0879 33 1 1.4547 -1.6615 -1.4123 34 1 8.2973 -3.2950 1.0553 35 1 6.4095 -1.1548 -3.5385 36 1 9.3686 -1.9927 -2.9234 37 1 8.6933 -1.5321 -4.5765 38 1 8.0685 0.7584 -3.6838 39 1 8.7436 0.2985 -2.0303 40 1 3.1124 -2.6433 0.7591 41 1 4.1896 -1.2928 1.2074 42 1 3.3286 0.7992 1.9483 43 1 1.6779 0.7928 2.6139 44 1 2.9808 -1.5713 3.4440 45 1 4.6219 -0.5671 7.5259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106745377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:06 Heat of formation + Delta-G solvation = 36.142366 kcal Electronic energy + Delta-G solvation = -27053.498779 eV Core-core repulsion = 23391.365167 eV Total energy + Delta-G solvation = -3662.133612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.69648 -40.88923 -39.04339 -37.47365 -36.54783 -34.36044 -33.48672 -31.78279 -30.93230 -28.21104 -27.32506 -26.53549 -24.76304 -23.95638 -23.27891 -22.82039 -21.89291 -21.29832 -19.71919 -19.69389 -19.18496 -17.79053 -17.39411 -17.07456 -16.59607 -16.34910 -16.22261 -15.71347 -15.46814 -15.41178 -15.14270 -15.06792 -14.74999 -14.19287 -14.17738 -13.79554 -13.64950 -13.39058 -13.17096 -13.13312 -12.76199 -12.64677 -12.53137 -12.43544 -12.09953 -12.00235 -11.83703 -11.78395 -11.59284 -11.49618 -11.48029 -11.14136 -10.94912 -10.71021 -10.58205 -10.04439 -9.62598 -9.29204 -7.99601 -5.34375 -0.86858 0.12922 0.52057 1.25788 1.39772 1.44558 1.52386 1.72621 1.93582 2.51728 2.92637 3.08642 3.22016 3.31746 3.41151 3.55435 3.62984 3.78492 3.91302 3.98821 4.07558 4.11874 4.19423 4.32604 4.41595 4.46705 4.50831 4.65481 4.67513 4.70006 4.71608 4.82841 4.83589 4.97222 5.01222 5.06277 5.15579 5.17548 5.22072 5.26747 5.33106 5.51444 5.78180 6.22707 6.23214 6.49729 6.85730 7.10501 7.83859 8.05347 9.22055 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010433 B = 0.004480 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.095794 B = 6248.624142 C = 8133.606207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 H 0.075 0.925 4 C 0.113 3.887 5 N -0.616 5.616 6 C 0.614 3.386 7 O -0.554 6.554 8 C -0.322 4.322 9 S 0.207 5.793 10 C 0.027 3.973 11 N -0.493 5.493 12 C 0.167 3.833 13 C -0.120 4.120 14 C -0.144 4.144 15 C -0.155 4.155 16 C 0.088 3.912 17 C -0.094 4.094 18 H 0.109 0.891 19 C 0.166 3.834 20 N -0.753 5.753 21 C -0.235 4.235 22 H 0.051 0.949 23 C -0.061 4.061 24 N -0.986 5.986 25 Si 0.945 3.055 26 H -0.268 1.268 27 H -0.300 1.300 28 H -0.242 1.242 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.238 0.762 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.013 0.987 43 H 0.033 0.967 44 H 0.368 0.632 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.614 -7.658 -19.915 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 H 0.094 0.906 4 C -0.009 4.009 5 N -0.348 5.348 6 C 0.403 3.597 7 O -0.435 6.435 8 C -0.446 4.446 9 S 0.465 5.535 10 C -0.267 4.267 11 N -0.207 5.207 12 C 0.028 3.972 13 C -0.140 4.140 14 C -0.181 4.181 15 C -0.193 4.193 16 C -0.035 4.035 17 C -0.113 4.113 18 H 0.127 0.873 19 C 0.039 3.961 20 N -0.399 5.399 21 C -0.366 4.366 22 H 0.069 0.931 23 C -0.253 4.253 24 N -0.636 5.636 25 Si 0.771 3.229 26 H -0.193 1.193 27 H -0.227 1.227 28 H -0.166 1.166 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.254 0.746 35 H 0.148 0.852 36 H 0.118 0.882 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.031 0.969 43 H 0.051 0.949 44 H 0.202 0.798 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.599 -7.605 -19.687 21.114 hybrid contribution 0.583 -0.322 0.248 0.711 sum -0.016 -7.927 -19.440 20.994 Atomic orbital electron populations 1.21709 0.91391 1.03290 1.02825 1.22187 0.97903 0.98860 0.92105 0.90619 1.22689 0.80645 0.99683 0.97841 1.48642 1.08871 1.65510 1.11764 1.16337 0.81015 0.77870 0.84452 1.90720 1.84457 1.49705 1.18595 1.25386 0.99457 1.17812 1.01923 1.84578 1.07175 1.49231 1.12493 1.29538 1.00447 1.00010 0.96664 1.66091 1.35178 1.13539 1.05876 1.19959 0.86226 0.94649 0.96384 1.20910 0.96390 1.04662 0.92060 1.23025 0.95191 0.98510 1.01409 1.22977 1.00831 0.92230 1.03291 1.22539 0.99936 1.00725 0.80344 1.22336 0.96341 0.97634 0.94999 0.87315 1.20785 0.96119 0.93304 0.85856 1.42632 1.78538 1.04692 1.14058 1.18969 1.33503 0.91793 0.92323 0.93112 1.25516 1.01284 1.02910 0.95560 1.69899 1.50897 1.36577 1.06236 0.85554 0.79567 0.80561 0.77209 1.19347 1.22673 1.16608 0.92146 0.90938 0.90927 0.89799 0.88355 0.74568 0.85163 0.88199 0.86372 0.86739 0.89695 0.89080 0.90958 0.96928 0.94911 0.79800 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.16 71.98 0.66 -1.36 16 2 C -0.09 -1.83 3.19 -9.70 -0.03 -1.86 16 3 H 0.08 1.73 7.86 -2.39 -0.02 1.71 16 4 C 0.11 2.31 6.54 86.61 0.57 2.88 16 5 N -0.62 -16.13 3.29 -814.77 -2.68 -18.81 16 6 C 0.61 18.83 7.84 86.45 0.68 19.51 16 7 O -0.55 -18.90 14.51 -4.28 -0.06 -18.96 16 8 C -0.32 -9.46 6.37 23.88 0.15 -9.31 16 9 S 0.21 5.18 19.10 -56.49 -1.08 4.11 16 10 C 0.03 0.61 12.22 130.60 1.60 2.21 16 11 N -0.49 -13.28 9.80 -190.41 -1.87 -15.14 16 12 C 0.17 4.84 6.42 42.09 0.27 5.11 16 13 C -0.12 -3.17 5.50 -11.54 -0.06 -3.23 16 14 C -0.14 -2.98 10.08 30.59 0.31 -2.67 16 15 C -0.16 -3.50 10.23 30.59 0.31 -3.19 16 16 C 0.09 2.25 4.79 86.53 0.41 2.67 16 17 C -0.09 -2.32 2.65 -9.90 -0.03 -2.34 16 18 H 0.11 2.37 7.85 -2.39 -0.02 2.35 16 19 C 0.17 5.74 5.34 86.38 0.46 6.20 16 20 N -0.75 -32.25 5.14 -343.44 -1.76 -34.02 16 21 C -0.23 -12.86 10.47 84.03 0.88 -11.98 16 22 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 23 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 24 N -0.99 -61.70 13.97 21.65 0.30 -61.40 16 25 Si 0.95 41.93 27.73 68.60 1.90 43.83 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.24 -9.29 6.52 99.48 0.65 -8.64 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 32 H 0.08 1.80 7.81 -2.38 -0.02 1.79 16 33 H 0.10 1.59 8.01 -2.39 -0.02 1.57 16 34 H 0.24 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.13 3.76 6.08 -2.39 -0.01 3.75 16 36 H 0.10 2.16 7.74 -2.38 -0.02 2.14 16 37 H 0.12 1.89 8.14 -2.39 -0.02 1.88 16 38 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.09 1.97 8.08 -2.39 -0.02 1.95 16 41 H 0.07 2.17 5.15 -9.38 -0.05 2.13 16 42 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.37 14.54 5.37 -92.71 -0.50 14.04 16 45 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -71.86 374.06 1.81 -70.05 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.42 Total: 30.70 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 6.65 Total: -0.36 kcal Atomic # 7 Polarization: -123.36 SS G_CDS: -6.01 Total: -129.37 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.06 Total: -18.96 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.90 Total: 43.83 kcal Atomic # 16 Polarization: 5.18 SS G_CDS: -1.08 Total: 4.11 kcal Total: -71.86 1.81 -70.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106745377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.193 kcal (2) G-P(sol) polarization free energy of solvation -71.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds