Wall clock time and date at job start Tue Mar 31 2020 19:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.28739 * 2 1 4 4 C 1.54003 * 110.32735 * 237.86492 * 2 1 3 5 5 N 1.47486 * 107.08041 * 242.41136 * 4 2 1 6 6 C 1.34776 * 127.02826 * 154.51685 * 5 4 2 7 7 O 1.21690 * 119.99596 * 185.52863 * 6 5 4 8 8 C 1.46681 * 120.00676 * 5.52764 * 6 5 4 9 9 C 1.35657 * 126.13345 * 186.11949 * 8 6 5 10 10 N 1.30950 * 114.19257 * 180.26604 * 9 8 6 11 11 C 1.29433 * 117.36055 * 359.97438 * 10 9 8 12 12 C 1.50701 * 124.80362 * 180.02562 * 11 10 9 13 13 C 1.53005 * 117.49481 * 8.59712 * 12 11 10 14 14 C 1.53002 * 60.00239 * 252.51173 * 13 12 11 15 15 S 1.70955 * 110.39439 * 0.02562 * 11 10 9 16 16 C 1.48111 * 105.93317 * 334.78061 * 5 4 2 17 17 C 1.54588 * 103.42524 * 39.02251 * 16 5 4 18 18 H 1.09006 * 110.57367 * 81.17150 * 17 16 5 19 19 C 1.52995 * 110.99192 * 204.37165 * 17 16 5 20 20 N 1.46504 * 109.47365 * 288.65575 * 19 17 16 21 21 C 1.36937 * 120.00145 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99742 * 0.02562 * 21 20 19 23 23 C 1.38808 * 119.99920 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99782 * 179.97438 * 23 21 20 25 25 Si 1.86792 * 120.00198 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47607 * 89.99552 * 25 23 21 27 27 H 1.48498 * 109.47356 * 209.99823 * 25 23 21 28 28 H 1.48495 * 109.47134 * 329.99516 * 25 23 21 29 29 H 1.09003 * 109.46721 * 180.68385 * 1 2 3 30 30 H 1.09003 * 109.47246 * 300.68275 * 1 2 3 31 31 H 1.09001 * 109.46938 * 60.68211 * 1 2 3 32 32 H 1.08997 * 109.91548 * 123.05277 * 4 2 1 33 33 H 1.09004 * 110.07514 * 1.86141 * 4 2 1 34 34 H 1.07996 * 122.90713 * 0.23404 * 9 8 6 35 35 H 1.08993 * 115.55494 * 154.30946 * 12 11 10 36 36 H 1.08993 * 117.50164 * 0.02562 * 13 12 11 37 37 H 1.09002 * 117.49183 * 145.02144 * 13 12 11 38 38 H 1.08996 * 117.49852 * 252.51865 * 14 13 12 39 39 H 1.08993 * 117.49612 * 107.48860 * 14 13 12 40 40 H 1.09006 * 110.65886 * 157.51183 * 16 5 4 41 41 H 1.09001 * 110.65944 * 280.62030 * 16 5 4 42 42 H 1.09009 * 109.46916 * 48.65130 * 19 17 16 43 43 H 1.08998 * 109.47506 * 168.65342 * 19 17 16 44 44 H 0.96993 * 119.99707 * 359.97438 * 20 19 17 45 45 H 0.97000 * 119.99687 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7682 -1.2229 5 7 2.8277 -1.9217 -0.7102 6 6 3.0614 -3.0872 -1.3453 7 8 3.6241 -3.9954 -0.7626 8 6 2.6374 -3.2612 -2.7386 9 6 2.7029 -4.4100 -3.4572 10 7 2.2643 -4.2999 -4.6862 11 6 1.8309 -3.1395 -5.0614 12 6 1.2901 -2.8255 -6.4326 13 6 1.0626 -3.9988 -7.3879 14 6 2.2255 -3.0333 -7.6255 15 16 1.9586 -2.0134 -3.7815 16 6 3.2789 -1.5396 0.6479 17 6 2.0672 -0.7735 1.2263 18 1 1.3175 -1.4699 1.6021 19 6 2.5053 0.1939 2.3276 20 7 2.8962 -0.5658 3.5178 21 6 3.3277 0.0919 4.6387 22 1 3.3795 1.1707 4.6455 23 6 3.6975 -0.6279 5.7665 24 7 4.1128 0.0043 6.8438 25 14 3.6073 -2.4936 5.7550 26 1 4.9004 -3.0489 5.2811 27 1 3.3317 -2.9843 7.1292 28 1 2.5179 -2.9308 4.8455 29 1 -0.3633 -1.0276 0.0123 30 1 -0.3634 0.5244 0.8838 31 1 -0.3633 0.5032 -0.8961 32 1 2.7181 -0.1227 -1.8102 33 1 1.2354 -1.1157 -1.8387 34 1 3.0842 -5.3351 -3.0511 35 1 0.5889 -1.9925 -6.4821 36 1 1.3037 -4.9977 -7.0246 37 1 0.2114 -3.9378 -8.0660 38 1 2.1393 -2.3372 -8.4598 39 1 3.2319 -3.3970 -7.4185 40 1 3.4936 -2.4257 1.2453 41 1 4.1523 -0.8897 0.5943 42 1 3.3533 0.7827 1.9778 43 1 1.6788 0.8594 2.5767 44 1 2.8493 -1.5345 3.5118 45 1 4.3709 -0.4986 7.6320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106903794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:08 Heat of formation + Delta-G solvation = 30.927366 kcal Electronic energy + Delta-G solvation = -26069.469995 eV Core-core repulsion = 22407.110243 eV Total energy + Delta-G solvation = -3662.359752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55848 -40.86146 -39.17058 -37.76584 -36.65591 -34.35277 -33.32786 -31.98733 -30.80129 -28.23293 -27.40655 -26.90640 -24.81931 -23.66774 -23.25638 -22.75858 -21.91102 -21.34496 -19.89928 -19.51288 -19.30494 -17.85768 -17.54969 -17.00064 -16.65191 -16.56642 -16.02652 -15.76457 -15.47215 -15.30433 -15.19369 -14.96857 -14.78826 -14.54502 -14.19499 -13.82686 -13.64187 -13.47576 -13.23018 -13.05754 -12.86131 -12.70628 -12.52331 -12.38244 -12.15912 -11.92502 -11.89064 -11.85064 -11.69776 -11.62955 -11.56513 -11.28988 -11.00098 -10.67174 -10.53100 -10.10914 -9.69717 -9.30373 -8.04665 -5.36828 -0.91280 0.03886 0.46347 1.23291 1.35000 1.37377 1.42940 1.65746 1.95639 2.44905 2.81269 3.00659 3.21634 3.27780 3.42458 3.54963 3.71037 3.74364 3.88805 3.94526 4.03984 4.08761 4.13559 4.25729 4.29761 4.40060 4.45486 4.54361 4.71926 4.75257 4.79221 4.80348 4.86389 4.94689 4.96088 5.03155 5.14114 5.14768 5.20581 5.29099 5.32002 5.47815 5.75499 6.19754 6.23722 6.51635 6.78853 7.06290 7.83486 7.99561 9.16683 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024260 B = 0.002526 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.884791 B =11081.031581 C =11887.458782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 H 0.113 0.887 4 C 0.090 3.910 5 N -0.615 5.615 6 C 0.607 3.393 7 O -0.576 6.576 8 C -0.324 4.324 9 C 0.120 3.880 10 N -0.504 5.504 11 C 0.071 3.929 12 C -0.115 4.115 13 C -0.150 4.150 14 C -0.145 4.145 15 S 0.259 5.741 16 C 0.112 3.888 17 C -0.098 4.098 18 H 0.075 0.925 19 C 0.168 3.832 20 N -0.762 5.762 21 C -0.227 4.227 22 H 0.065 0.935 23 C -0.061 4.061 24 N -0.981 5.981 25 Si 0.945 3.055 26 H -0.284 1.284 27 H -0.294 1.294 28 H -0.258 1.258 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.181 0.819 35 H 0.159 0.841 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.037 0.963 43 H 0.040 0.960 44 H 0.362 0.638 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.626 -1.114 -35.020 36.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 H 0.131 0.869 4 C -0.032 4.032 5 N -0.347 5.347 6 C 0.396 3.604 7 O -0.458 6.458 8 C -0.448 4.448 9 C -0.039 4.039 10 N -0.218 5.218 11 C -0.202 4.202 12 C -0.137 4.137 13 C -0.189 4.189 14 C -0.184 4.184 15 S 0.520 5.480 16 C -0.010 4.010 17 C -0.118 4.118 18 H 0.093 0.907 19 C 0.042 3.958 20 N -0.407 5.407 21 C -0.358 4.358 22 H 0.083 0.917 23 C -0.253 4.253 24 N -0.632 5.632 25 Si 0.774 3.226 26 H -0.210 1.210 27 H -0.221 1.221 28 H -0.183 1.183 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.198 0.802 35 H 0.176 0.824 36 H 0.107 0.893 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.195 0.805 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.548 -0.777 -34.926 36.493 hybrid contribution 0.861 -2.330 1.556 2.931 sum -9.688 -3.106 -33.370 34.887 Atomic orbital electron populations 1.21872 0.92504 1.02012 1.03559 1.22064 0.97651 1.00084 0.90599 0.86872 1.22710 0.96281 0.86781 0.97468 1.48681 1.53315 1.14838 1.17898 1.16653 0.78479 0.80913 0.84336 1.90832 1.45613 1.41443 1.67863 1.25520 1.18801 1.00572 0.99909 1.22166 0.95335 0.98696 0.87697 1.66231 1.15519 1.24437 1.15630 1.27350 0.98418 0.92519 1.01874 1.20934 1.05358 1.04418 0.82946 1.23079 1.01228 0.94396 1.00159 1.23143 0.95242 1.02906 0.97123 1.83634 1.53655 1.10791 0.99927 1.22474 0.97876 0.99047 0.81576 1.22420 0.96483 0.97460 0.95426 0.90703 1.20794 0.97556 0.93025 0.84464 1.42821 1.80758 1.04839 1.12325 1.19053 1.33910 0.92268 0.90571 0.91704 1.25399 1.02140 1.01826 0.95905 1.69861 1.52822 1.36082 1.04403 0.85552 0.78417 0.81846 0.76818 1.21019 1.22063 1.18286 0.93374 0.92050 0.89477 0.88257 0.88938 0.80246 0.82379 0.89345 0.85597 0.85001 0.89769 0.92384 0.89651 0.94454 0.94234 0.80539 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.90 71.98 0.64 -1.45 16 2 C -0.08 -1.49 3.17 -9.90 -0.03 -1.52 16 3 H 0.11 1.64 7.86 -2.39 -0.02 1.63 16 4 C 0.09 1.51 5.09 86.53 0.44 1.95 16 5 N -0.62 -15.92 3.29 -814.79 -2.68 -18.60 16 6 C 0.61 18.22 7.85 86.45 0.68 18.90 16 7 O -0.58 -22.33 17.06 -4.32 -0.07 -22.40 16 8 C -0.32 -7.62 6.37 23.88 0.15 -7.47 16 9 C 0.12 2.86 11.10 84.23 0.93 3.79 16 10 N -0.50 -10.73 9.98 -190.30 -1.90 -12.63 16 11 C 0.07 1.12 6.96 88.46 0.62 1.73 16 12 C -0.12 -1.05 6.28 -11.54 -0.07 -1.13 16 13 C -0.15 -1.31 10.12 30.60 0.31 -1.00 16 14 C -0.15 -1.11 10.23 30.60 0.31 -0.79 16 15 S 0.26 3.66 19.06 -56.49 -1.08 2.58 16 16 C 0.11 3.34 6.46 86.61 0.56 3.90 16 17 C -0.10 -2.65 2.60 -9.71 -0.03 -2.68 16 18 H 0.07 2.21 7.86 -2.38 -0.02 2.19 16 19 C 0.17 5.78 5.59 86.38 0.48 6.26 16 20 N -0.76 -35.13 5.33 -343.45 -1.83 -36.96 16 21 C -0.23 -12.86 10.47 84.03 0.88 -11.97 16 22 H 0.06 3.95 8.06 -2.91 -0.02 3.93 16 23 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 24 N -0.98 -63.30 13.97 21.65 0.30 -63.00 16 25 Si 0.95 47.29 27.74 68.60 1.90 49.19 16 26 H -0.28 -14.13 7.11 99.48 0.71 -13.43 16 27 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 28 H -0.26 -11.91 6.52 99.48 0.65 -11.26 16 29 H 0.05 0.79 8.13 -2.39 -0.02 0.77 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 1.24 8.07 -2.39 -0.02 1.22 16 33 H 0.09 1.26 5.30 -8.93 -0.05 1.21 16 34 H 0.18 4.30 8.06 -2.91 -0.02 4.27 16 35 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.09 1.18 7.84 -2.39 -0.02 1.16 16 37 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 40 H 0.06 2.08 7.81 -2.38 -0.02 2.06 16 41 H 0.09 2.46 7.95 -2.39 -0.02 2.45 16 42 H 0.04 1.27 8.00 -2.38 -0.02 1.25 16 43 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.36 16.58 5.53 -92.71 -0.51 16.07 16 45 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -77.94 379.61 1.38 -76.55 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.40 Total: 19.91 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 6.34 Total: 5.35 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -6.11 Total: -131.18 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.07 Total: -22.40 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.90 Total: 49.19 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.08 Total: 2.58 kcal Total: -77.94 1.38 -76.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106903794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.482 kcal (2) G-P(sol) polarization free energy of solvation -77.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds