Wall clock time and date at job start Tue Mar 31 2020 19:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.99486 * 2 1 4 4 C 1.54324 * 109.88375 * 121.09652 * 2 1 3 5 5 H 1.09005 * 110.71934 * 215.76478 * 4 2 1 6 6 N 1.46892 * 110.71958 * 338.86436 * 4 2 1 7 7 C 1.46902 * 111.00112 * 204.99975 * 6 4 2 8 8 C 1.50696 * 109.47342 * 180.02562 * 7 6 4 9 9 C 1.38667 * 120.41949 * 90.00163 * 8 7 6 10 10 C 1.38631 * 118.41957 * 180.02562 * 9 8 7 11 11 C 1.38230 * 119.16205 * 359.97438 * 10 9 8 12 12 N 1.31852 * 120.76354 * 359.97438 * 11 10 9 13 13 C 1.31893 * 121.72546 * 359.71131 * 12 11 10 14 14 C 1.55155 * 102.93924 * 97.22718 * 4 2 1 15 15 C 1.54689 * 101.67730 * 35.33807 * 14 4 2 16 16 N 1.47017 * 109.88449 * 238.91030 * 2 1 3 17 17 C 1.34775 * 125.64996 * 59.47887 * 16 2 1 18 18 O 1.21284 * 120.00295 * 0.02562 * 17 16 2 19 19 C 1.50708 * 119.99957 * 179.97438 * 17 16 2 20 20 S 1.80998 * 109.47052 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00013 * 180.02562 * 20 19 17 22 22 H 1.07991 * 119.99794 * 0.02562 * 21 20 19 23 23 C 1.38798 * 119.99771 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00311 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99653 * 180.02562 * 23 21 20 26 26 H 1.48511 * 109.47049 * 269.99633 * 25 23 21 27 27 H 1.48494 * 109.47357 * 29.99707 * 25 23 21 28 28 H 1.48502 * 109.47120 * 150.00426 * 25 23 21 29 29 H 1.09001 * 109.47324 * 179.64137 * 1 2 3 30 30 H 1.08999 * 109.47430 * 299.64015 * 1 2 3 31 31 H 1.09002 * 109.47373 * 59.64129 * 1 2 3 32 32 H 1.00897 * 111.00139 * 81.04906 * 6 4 2 33 33 H 1.09004 * 109.46857 * 300.00398 * 7 6 4 34 34 H 1.09004 * 109.47136 * 59.99389 * 7 6 4 35 35 H 1.08001 * 120.79227 * 359.97247 * 9 8 7 36 36 H 1.07996 * 120.41888 * 179.97438 * 10 9 8 37 37 H 1.08000 * 119.62142 * 180.02562 * 11 10 9 38 38 H 1.07999 * 119.61997 * 180.30424 * 13 12 11 39 39 H 1.09001 * 111.00292 * 153.57485 * 14 4 2 40 40 H 1.09002 * 111.00365 * 277.42439 * 14 4 2 41 41 H 1.09002 * 110.38906 * 204.36355 * 15 14 4 42 42 H 1.08994 * 110.24141 * 82.11486 * 15 14 4 43 43 H 1.09005 * 109.46512 * 60.00633 * 19 17 16 44 44 H 1.08991 * 109.47135 * 300.00153 * 19 17 16 45 45 H 0.97001 * 119.99662 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.9639 -0.2813 1.6201 6 7 1.0265 -0.8028 2.2903 7 6 1.6355 -0.9507 3.6189 8 6 0.5523 -1.0022 4.6652 9 6 -0.0018 -2.2160 5.0430 10 6 -0.9961 -2.2151 6.0090 11 6 -1.3989 -1.0131 6.5600 12 7 -0.8487 0.1223 6.1771 13 6 0.1036 0.1588 5.2654 14 6 2.3519 -2.1694 0.6923 15 6 2.8523 -1.8529 -0.7368 16 7 2.0300 -0.7139 -1.1839 17 6 1.7741 -0.3851 -2.4657 18 8 1.0767 0.5745 -2.7180 19 6 2.3556 -1.2093 -3.5855 20 16 1.8348 -0.5193 -5.1757 21 6 2.6327 -1.6434 -6.2730 22 1 3.2248 -2.4554 -5.8777 23 6 2.5002 -1.4853 -7.6456 24 7 1.7789 -0.4953 -8.1275 25 14 3.3455 -2.6775 -8.8090 26 1 4.7046 -2.1738 -9.1325 27 1 3.4525 -4.0094 -8.1611 28 1 2.5517 -2.7970 -10.0583 29 1 -0.3634 -1.0276 -0.0064 30 1 -0.3634 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 0.3657 -1.5440 2.1110 33 1 2.2162 -1.8726 3.6518 34 1 2.2905 -0.1017 3.8148 35 1 0.3327 -3.1399 4.5947 36 1 -1.4502 -3.1419 6.3271 37 1 -2.1726 -1.0039 7.3135 38 1 0.5340 1.1076 4.9807 39 1 3.1271 -2.6618 1.2794 40 1 1.4452 -2.7736 0.6603 41 1 2.6998 -2.7110 -1.3914 42 1 3.9059 -1.5744 -0.7143 43 1 2.0019 -2.2369 -3.5016 44 1 3.4435 -1.1929 -3.5216 45 1 1.3396 0.1236 -7.5234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178147508.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:15 Heat of formation + Delta-G solvation = 2.844489 kcal Electronic energy + Delta-G solvation = -25539.493145 eV Core-core repulsion = 21875.915628 eV Total energy + Delta-G solvation = -3663.577517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.67974 -40.19920 -37.94850 -35.68414 -33.04846 -32.53459 -32.22035 -31.37138 -30.43366 -28.51406 -26.24547 -25.06366 -24.79513 -23.98861 -23.05126 -22.21601 -20.74803 -18.98324 -18.25624 -17.61698 -17.04227 -16.79499 -16.43215 -16.05795 -15.37075 -15.29458 -14.80336 -14.43156 -14.26868 -14.06811 -13.85846 -13.66234 -13.53755 -13.39484 -13.31227 -12.94685 -12.70306 -12.54443 -12.42816 -12.33208 -11.97044 -11.89005 -11.75211 -11.51559 -11.03653 -10.92580 -10.90360 -10.28595 -10.20241 -9.87356 -9.58535 -9.48360 -9.40895 -9.01940 -8.83202 -8.56569 -8.22275 -6.67610 -6.62880 -4.00678 0.64761 0.83697 2.76361 2.98968 3.27841 3.33716 3.38028 3.45574 3.55377 3.80248 4.02479 4.19700 4.21768 4.26444 4.32809 4.39480 4.53712 4.55846 4.63773 4.87217 4.90869 4.98725 5.02808 5.05879 5.21672 5.28158 5.31876 5.34412 5.36516 5.45189 5.48331 5.52905 5.64942 5.66478 5.77857 5.78521 5.89326 6.00366 6.06724 6.25448 6.38693 6.46181 6.58728 6.86263 7.56630 7.61728 7.91348 8.49262 8.49972 9.26477 10.81112 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.032714 B = 0.001891 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.703534 B =14802.031492 C =15118.733779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.146 3.854 3 H 0.076 0.924 4 C 0.082 3.918 5 H 0.095 0.905 6 N -0.669 5.669 7 C 0.102 3.898 8 C -0.135 4.135 9 C -0.070 4.070 10 C -0.174 4.174 11 C 0.097 3.903 12 N -0.486 5.486 13 C 0.121 3.879 14 C -0.162 4.162 15 C 0.103 3.897 16 N -0.623 5.623 17 C 0.548 3.452 18 O -0.512 6.512 19 C -0.124 4.124 20 S -0.116 6.116 21 C -0.607 4.607 22 H 0.065 0.935 23 C 0.035 3.965 24 N -0.884 5.884 25 Si 1.087 2.913 26 H -0.284 1.284 27 H -0.287 1.287 28 H -0.279 1.279 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.347 0.653 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 -6.367 30.553 31.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.042 3.958 3 H 0.094 0.906 4 C -0.029 4.029 5 H 0.113 0.887 6 N -0.300 5.300 7 C -0.027 4.027 8 C -0.137 4.137 9 C -0.097 4.097 10 C -0.193 4.193 11 C -0.060 4.060 12 N -0.195 5.195 13 C -0.036 4.036 14 C -0.202 4.202 15 C -0.021 4.021 16 N -0.361 5.361 17 C 0.337 3.663 18 O -0.386 6.386 19 C -0.276 4.276 20 S 0.111 5.889 21 C -0.755 4.755 22 H 0.084 0.916 23 C -0.176 4.176 24 N -0.518 5.518 25 Si 0.913 3.087 26 H -0.210 1.210 27 H -0.213 1.213 28 H -0.205 1.205 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.167 0.833 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.172 0.828 38 H 0.174 0.826 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.869 -3.765 28.920 29.177 hybrid contribution 1.314 -2.871 1.510 3.500 sum 0.444 -6.636 30.429 31.148 Atomic orbital electron populations 1.21934 0.94132 1.01724 1.03160 1.21384 0.95579 0.95687 0.83109 0.90616 1.22627 0.94325 0.94725 0.91179 0.88655 1.60478 1.16496 1.52884 1.00143 1.20841 0.93519 1.01517 0.86826 1.20783 0.99625 0.94302 0.98986 1.21523 0.94768 0.97893 0.95517 1.22142 0.98752 1.00008 0.98444 1.22814 0.97641 0.87804 0.97735 1.67745 1.08836 1.29962 1.12911 1.22725 0.91935 0.97984 0.90995 1.23460 1.02356 0.97897 0.96485 1.22147 0.95193 0.89860 0.94888 1.48573 1.52083 1.30527 1.04939 1.19938 0.80168 0.84803 0.81421 1.90699 1.37242 1.28106 1.82545 1.23298 1.03723 1.02288 0.98241 1.84829 1.68245 1.42001 0.93866 1.23720 1.39479 1.17250 0.95091 0.91633 1.26055 0.96194 0.99354 0.95950 1.70768 1.28077 1.14013 1.38961 0.83291 0.75912 0.74271 0.75215 1.21046 1.21330 1.20487 0.93539 0.90555 0.91442 0.83297 0.93860 0.89509 0.85095 0.84790 0.82827 0.82603 0.89931 0.90398 0.90326 0.91233 0.89221 0.89155 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.26 37.15 0.31 -1.60 16 2 C 0.15 1.74 3.48 -66.96 -0.23 1.50 16 3 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 4 C 0.08 0.63 3.15 -65.88 -0.21 0.42 16 5 H 0.10 0.65 7.82 -51.93 -0.41 0.24 16 6 N -0.67 -4.50 4.78 -106.06 -0.51 -5.00 16 7 C 0.10 0.54 5.70 -4.98 -0.03 0.51 16 8 C -0.13 -0.86 5.41 -104.48 -0.57 -1.43 16 9 C -0.07 -0.40 9.86 -39.28 -0.39 -0.79 16 10 C -0.17 -0.98 10.11 -39.44 -0.40 -1.38 16 11 C 0.10 0.68 11.18 -17.55 -0.20 0.49 16 12 N -0.49 -4.47 10.36 -13.25 -0.14 -4.60 16 13 C 0.12 0.95 10.86 -17.54 -0.19 0.76 16 14 C -0.16 -1.13 6.65 -24.70 -0.16 -1.29 16 15 C 0.10 1.03 6.68 -2.65 -0.02 1.01 16 16 N -0.62 -8.75 3.08 -163.16 -0.50 -9.25 16 17 C 0.55 10.52 7.65 -10.98 -0.08 10.44 16 18 O -0.51 -11.76 14.76 5.55 0.08 -11.67 16 19 C -0.12 -2.57 5.17 36.01 0.19 -2.38 16 20 S -0.12 -3.15 19.60 -107.50 -2.11 -5.26 16 21 C -0.61 -17.58 9.50 30.94 0.29 -17.29 16 22 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 23 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 24 N -0.88 -27.63 13.67 55.49 0.76 -26.87 16 25 Si 1.09 25.02 29.92 -169.99 -5.09 19.93 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H 0.05 0.56 7.95 -51.93 -0.41 0.15 16 30 H 0.08 0.87 7.44 -51.93 -0.39 0.48 16 31 H 0.07 1.09 6.74 -51.93 -0.35 0.74 16 32 H 0.35 2.35 7.72 -39.29 -0.30 2.04 16 33 H 0.04 0.19 8.10 -51.93 -0.42 -0.23 16 34 H 0.09 0.43 8.03 -51.93 -0.42 0.01 16 35 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 37 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.55 7.77 -51.93 -0.40 0.15 16 41 H 0.08 0.80 7.48 -51.93 -0.39 0.41 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.73 7.84 -51.91 -0.41 1.32 16 44 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.28 8.89 7.12 -40.82 -0.29 8.60 16 LS Contribution 383.25 15.07 5.78 5.78 Total: -1.00 -35.97 383.25 -10.28 -46.25 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.77 Total: 0.80 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -1.78 Total: -10.10 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.39 Total: -45.72 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.09 Total: 19.93 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.11 Total: -5.26 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.97 -10.28 -46.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147508.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.092 kcal (2) G-P(sol) polarization free energy of solvation -35.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds