Wall clock time and date at job start Tue Mar 31 2020 19:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.99486 * 2 1 4 4 C 1.54324 * 109.88375 * 121.09652 * 2 1 3 5 5 H 1.09005 * 110.71934 * 215.76478 * 4 2 1 6 6 N 1.46892 * 110.71958 * 338.86436 * 4 2 1 7 7 C 1.46902 * 111.00112 * 204.99975 * 6 4 2 8 8 C 1.50696 * 109.47342 * 180.02562 * 7 6 4 9 9 C 1.38667 * 120.41949 * 90.00163 * 8 7 6 10 10 C 1.38631 * 118.41957 * 180.02562 * 9 8 7 11 11 C 1.38230 * 119.16205 * 359.97438 * 10 9 8 12 12 N 1.31852 * 120.76354 * 359.97438 * 11 10 9 13 13 C 1.31893 * 121.72546 * 359.71131 * 12 11 10 14 14 C 1.55155 * 102.93924 * 97.22718 * 4 2 1 15 15 C 1.54689 * 101.67730 * 35.33807 * 14 4 2 16 16 N 1.47017 * 109.88449 * 238.91030 * 2 1 3 17 17 C 1.34775 * 125.64996 * 59.47887 * 16 2 1 18 18 O 1.21284 * 120.00295 * 0.02562 * 17 16 2 19 19 C 1.50708 * 119.99957 * 179.97438 * 17 16 2 20 20 S 1.80998 * 109.47052 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00013 * 180.02562 * 20 19 17 22 22 H 1.07991 * 119.99794 * 0.02562 * 21 20 19 23 23 C 1.38798 * 119.99771 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00311 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99653 * 180.02562 * 23 21 20 26 26 H 1.48511 * 109.47049 * 269.99633 * 25 23 21 27 27 H 1.48494 * 109.47357 * 29.99707 * 25 23 21 28 28 H 1.48502 * 109.47120 * 150.00426 * 25 23 21 29 29 H 1.09001 * 109.47324 * 179.64137 * 1 2 3 30 30 H 1.08999 * 109.47430 * 299.64015 * 1 2 3 31 31 H 1.09002 * 109.47373 * 59.64129 * 1 2 3 32 32 H 1.00897 * 111.00139 * 81.04906 * 6 4 2 33 33 H 1.09004 * 109.46857 * 300.00398 * 7 6 4 34 34 H 1.09004 * 109.47136 * 59.99389 * 7 6 4 35 35 H 1.08001 * 120.79227 * 359.97247 * 9 8 7 36 36 H 1.07996 * 120.41888 * 179.97438 * 10 9 8 37 37 H 1.08000 * 119.62142 * 180.02562 * 11 10 9 38 38 H 1.07999 * 119.61997 * 180.30424 * 13 12 11 39 39 H 1.09001 * 111.00292 * 153.57485 * 14 4 2 40 40 H 1.09002 * 111.00365 * 277.42439 * 14 4 2 41 41 H 1.09002 * 110.38906 * 204.36355 * 15 14 4 42 42 H 1.08994 * 110.24141 * 82.11486 * 15 14 4 43 43 H 1.09005 * 109.46512 * 60.00633 * 19 17 16 44 44 H 1.08991 * 109.47135 * 300.00153 * 19 17 16 45 45 H 0.97001 * 119.99662 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.9639 -0.2813 1.6201 6 7 1.0265 -0.8028 2.2903 7 6 1.6355 -0.9507 3.6189 8 6 0.5523 -1.0022 4.6652 9 6 -0.0018 -2.2160 5.0430 10 6 -0.9961 -2.2151 6.0090 11 6 -1.3989 -1.0131 6.5600 12 7 -0.8487 0.1223 6.1771 13 6 0.1036 0.1588 5.2654 14 6 2.3519 -2.1694 0.6923 15 6 2.8523 -1.8529 -0.7368 16 7 2.0300 -0.7139 -1.1839 17 6 1.7741 -0.3851 -2.4657 18 8 1.0767 0.5745 -2.7180 19 6 2.3556 -1.2093 -3.5855 20 16 1.8348 -0.5193 -5.1757 21 6 2.6327 -1.6434 -6.2730 22 1 3.2248 -2.4554 -5.8777 23 6 2.5002 -1.4853 -7.6456 24 7 1.7789 -0.4953 -8.1275 25 14 3.3455 -2.6775 -8.8090 26 1 4.7046 -2.1738 -9.1325 27 1 3.4525 -4.0094 -8.1611 28 1 2.5517 -2.7970 -10.0583 29 1 -0.3634 -1.0276 -0.0064 30 1 -0.3634 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 0.3657 -1.5440 2.1110 33 1 2.2162 -1.8726 3.6518 34 1 2.2905 -0.1017 3.8148 35 1 0.3327 -3.1399 4.5947 36 1 -1.4502 -3.1419 6.3271 37 1 -2.1726 -1.0039 7.3135 38 1 0.5340 1.1076 4.9807 39 1 3.1271 -2.6618 1.2794 40 1 1.4452 -2.7736 0.6603 41 1 2.6998 -2.7110 -1.3914 42 1 3.9059 -1.5744 -0.7143 43 1 2.0019 -2.2369 -3.5016 44 1 3.4435 -1.1929 -3.5216 45 1 1.3396 0.1236 -7.5234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178147508.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:14 Heat of formation + Delta-G solvation = -21.613097 kcal Electronic energy + Delta-G solvation = -25540.553706 eV Core-core repulsion = 21875.915628 eV Total energy + Delta-G solvation = -3664.638077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45097 -40.99316 -39.10868 -36.44768 -34.76040 -33.77475 -32.83588 -32.23119 -31.44766 -29.76898 -27.10575 -26.92267 -25.70244 -24.45409 -24.01015 -22.66267 -21.65150 -20.55144 -19.88506 -18.33297 -17.97437 -17.45343 -17.33176 -17.01718 -16.62632 -16.26697 -15.99508 -15.70411 -15.40710 -15.17590 -14.74894 -14.58320 -14.45263 -14.33494 -14.11879 -13.95539 -13.84879 -13.77610 -13.60010 -13.48917 -13.14635 -12.99208 -12.75569 -12.55475 -12.22560 -11.94774 -11.82066 -11.74516 -11.55169 -11.11585 -10.94281 -10.74936 -10.36904 -10.33743 -9.94731 -9.75424 -9.32460 -8.93981 -8.89458 -6.29504 0.18575 0.39176 1.14030 1.49354 1.50656 1.60830 1.78884 1.98338 2.32914 2.81707 3.01248 3.07765 3.23680 3.44859 3.52354 3.63772 3.81205 3.90891 3.97214 4.05863 4.10847 4.13610 4.16430 4.16715 4.29448 4.33698 4.41021 4.55177 4.61732 4.64282 4.72470 4.77423 4.88838 4.93560 4.97881 5.05450 5.07628 5.23310 5.32373 5.36064 5.46287 5.62715 5.82140 5.99795 6.13098 6.35665 6.36580 7.04765 7.07016 7.08374 8.49378 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.032714 B = 0.001891 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.703534 B =14802.031492 C =15118.733779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.138 3.862 3 H 0.059 0.941 4 C 0.100 3.900 5 H 0.113 0.887 6 N -0.678 5.678 7 C 0.108 3.892 8 C -0.135 4.135 9 C -0.073 4.073 10 C -0.173 4.173 11 C 0.079 3.921 12 N -0.522 5.522 13 C 0.099 3.901 14 C -0.147 4.147 15 C 0.089 3.911 16 N -0.613 5.613 17 C 0.544 3.456 18 O -0.563 6.563 19 C -0.099 4.099 20 S -0.197 6.197 21 C -0.613 4.613 22 H 0.075 0.925 23 C -0.020 4.020 24 N -0.913 5.913 25 Si 1.140 2.860 26 H -0.267 1.267 27 H -0.261 1.261 28 H -0.279 1.279 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.023 0.977 32 H 0.349 0.651 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.169 0.831 38 H 0.157 0.843 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 -9.668 32.693 34.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.034 3.966 3 H 0.077 0.923 4 C -0.011 4.011 5 H 0.131 0.869 6 N -0.309 5.309 7 C -0.020 4.020 8 C -0.137 4.137 9 C -0.099 4.099 10 C -0.192 4.192 11 C -0.078 4.078 12 N -0.231 5.231 13 C -0.058 4.058 14 C -0.186 4.186 15 C -0.033 4.033 16 N -0.348 5.348 17 C 0.332 3.668 18 O -0.442 6.442 19 C -0.250 4.250 20 S 0.030 5.970 21 C -0.760 4.760 22 H 0.093 0.907 23 C -0.223 4.223 24 N -0.548 5.548 25 Si 0.957 3.043 26 H -0.192 1.192 27 H -0.186 1.186 28 H -0.204 1.204 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.042 0.958 32 H 0.169 0.831 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.174 0.826 36 H 0.176 0.824 37 H 0.186 0.814 38 H 0.174 0.826 39 H 0.136 0.864 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.099 -7.092 31.146 31.962 hybrid contribution 0.675 -1.840 1.041 2.219 sum 1.774 -8.932 32.186 33.450 Atomic orbital electron populations 1.21799 0.94920 1.01558 1.01521 1.21614 0.94989 0.95692 0.84305 0.92253 1.22450 0.94667 0.94671 0.89341 0.86900 1.60350 1.16534 1.53383 1.00593 1.20840 0.93120 1.02775 0.85276 1.20881 0.99780 0.94062 0.98999 1.21874 0.94321 0.98530 0.95203 1.22447 0.98468 1.00392 0.97918 1.23186 0.98174 0.87993 0.98411 1.67696 1.09942 1.31429 1.14058 1.22885 0.92377 0.98911 0.91585 1.23452 1.03499 0.97361 0.94306 1.22569 0.95595 0.88250 0.96905 1.48516 1.51196 1.31379 1.03673 1.19684 0.80014 0.84172 0.82922 1.90684 1.39669 1.30204 1.83638 1.23156 1.04575 1.02654 0.94651 1.85096 1.69336 1.43752 0.98799 1.24042 1.39075 1.17246 0.95637 0.90653 1.27874 0.95883 1.00099 0.98424 1.70891 1.29985 1.15269 1.38676 0.82683 0.75399 0.73075 0.73121 1.19225 1.18560 1.20443 0.92849 0.89358 0.95822 0.83083 0.91694 0.89123 0.82636 0.82355 0.81390 0.82576 0.86445 0.90086 0.90163 0.89454 0.87560 0.87466 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.26 71.98 0.59 -2.94 16 2 C 0.14 3.11 3.48 45.34 0.16 3.27 16 3 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 4 C 0.10 1.17 3.15 46.10 0.15 1.32 16 5 H 0.11 1.03 7.82 -2.38 -0.02 1.02 16 6 N -0.68 -6.96 4.78 -489.45 -2.34 -9.30 16 7 C 0.11 0.75 5.70 85.56 0.49 1.24 16 8 C -0.13 -1.41 5.41 -19.78 -0.11 -1.52 16 9 C -0.07 -0.61 9.86 22.47 0.22 -0.39 16 10 C -0.17 -1.55 10.11 22.36 0.23 -1.32 16 11 C 0.08 1.03 11.18 84.69 0.95 1.98 16 12 N -0.52 -9.49 10.36 -195.83 -2.03 -11.52 16 13 C 0.10 1.50 10.86 84.67 0.92 2.42 16 14 C -0.15 -1.35 6.65 31.91 0.21 -1.14 16 15 C 0.09 1.47 6.68 86.78 0.58 2.05 16 16 N -0.61 -16.43 3.08 -788.49 -2.43 -18.86 16 17 C 0.54 21.11 7.65 87.66 0.67 21.78 16 18 O -0.56 -27.18 14.76 -3.04 -0.04 -27.23 16 19 C -0.10 -4.05 5.17 71.24 0.37 -3.69 16 20 S -0.20 -11.05 19.60 -56.49 -1.11 -12.16 16 21 C -0.61 -35.60 9.50 67.95 0.65 -34.95 16 22 H 0.08 4.09 7.80 -2.92 -0.02 4.07 16 23 C -0.02 -1.16 5.49 84.86 0.47 -0.69 16 24 N -0.91 -58.53 13.67 21.65 0.30 -58.24 16 25 Si 1.14 49.37 29.92 68.60 2.05 51.43 16 26 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 27 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 28 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 29 H 0.05 1.24 7.95 -2.39 -0.02 1.22 16 30 H 0.09 1.98 7.44 -2.39 -0.02 1.96 16 31 H 0.02 0.79 6.74 -2.39 -0.02 0.78 16 32 H 0.35 3.51 7.72 -89.70 -0.69 2.81 16 33 H 0.06 0.22 8.10 -2.38 -0.02 0.20 16 34 H 0.09 0.60 8.03 -2.38 -0.02 0.58 16 35 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 36 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 37 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 38 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.08 0.76 7.77 -2.39 -0.02 0.75 16 41 H 0.08 1.35 7.48 -2.39 -0.02 1.33 16 42 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.11 3.97 7.84 -2.39 -0.02 3.95 16 44 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 45 H 0.26 17.40 7.12 -92.71 -0.66 16.74 16 Total: -1.00 -83.59 383.25 1.34 -82.25 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.41 Total: 16.19 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 6.54 Total: -12.57 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -6.50 Total: -97.91 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.04 Total: -27.23 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.05 Total: 51.43 kcal Atomic # 16 Polarization: -11.05 SS G_CDS: -1.11 Total: -12.16 kcal Total: -83.59 1.34 -82.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147508.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.633 kcal (2) G-P(sol) polarization free energy of solvation -83.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds