Wall clock time and date at job start Tue Mar 31 2020 19:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.78764 * 2 1 4 4 C 1.54939 * 110.72330 * 236.75520 * 2 1 3 5 5 N 1.48537 * 103.22847 * 204.23141 * 4 2 1 6 6 C 1.46899 * 110.99989 * 159.72293 * 5 4 2 7 7 C 1.50698 * 109.46775 * 190.00060 * 6 5 4 8 8 C 1.38223 * 119.62372 * 94.99705 * 7 6 5 9 9 C 1.38627 * 119.16336 * 179.97438 * 8 7 6 10 10 C 1.38665 * 118.42105 * 0.02562 * 9 8 7 11 11 C 1.38184 * 119.16494 * 359.97438 * 10 9 8 12 12 N 1.31854 * 119.61312 * 274.71654 * 7 6 5 13 13 C 1.47894 * 105.82167 * 39.20440 * 5 4 2 14 14 C 1.53998 * 107.05997 * 334.66894 * 13 5 4 15 15 H 1.09007 * 110.39258 * 120.18043 * 14 13 5 16 16 N 1.46497 * 110.31181 * 242.31361 * 14 13 5 17 17 C 1.34777 * 119.99525 * 270.71198 * 16 14 13 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 14 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99727 * 25 23 21 27 27 H 1.48501 * 109.47302 * 209.99797 * 25 23 21 28 28 H 1.48501 * 109.46788 * 330.00118 * 25 23 21 29 29 H 1.09008 * 109.46868 * 296.74915 * 1 2 3 30 30 H 1.09001 * 109.47160 * 56.74176 * 1 2 3 31 31 H 1.09001 * 109.47447 * 176.74913 * 1 2 3 32 32 H 1.09011 * 110.66595 * 322.66230 * 4 2 1 33 33 H 1.08998 * 110.66888 * 85.62396 * 4 2 1 34 34 H 1.09003 * 109.46500 * 309.99515 * 6 5 4 35 35 H 1.09000 * 109.47351 * 69.99126 * 6 5 4 36 36 H 1.08010 * 120.41754 * 359.97438 * 8 7 6 37 37 H 1.08000 * 120.79134 * 179.97438 * 9 8 7 38 38 H 1.08001 * 120.42147 * 179.97438 * 10 9 8 39 39 H 1.08004 * 119.62126 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.92007 * 215.32399 * 13 5 4 41 41 H 1.09000 * 109.92085 * 94.02245 * 13 5 4 42 42 H 0.97000 * 120.00580 * 90.71944 * 16 14 13 43 43 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 44 44 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 45 45 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0782 -0.7944 -1.2120 5 7 3.4318 -1.2093 -0.7623 6 6 3.9211 -2.3497 -1.5483 7 6 5.1736 -2.8968 -0.9135 8 6 5.0859 -3.9603 -0.0350 9 6 6.2442 -4.4562 0.5430 10 6 7.4528 -3.8609 0.2148 11 6 7.4626 -2.8010 -0.6717 12 7 6.3411 -2.3588 -1.2069 13 6 3.2893 -1.5710 0.6646 14 6 2.0771 -0.7929 1.2092 15 1 1.3201 -1.4822 1.5833 16 7 2.4972 0.1249 2.2709 17 6 2.5241 -0.2936 3.5518 18 8 2.2009 -1.4302 3.8254 19 6 2.9621 0.6486 4.6433 20 16 2.8982 -0.2045 6.2383 21 6 3.4448 1.0909 7.3003 22 1 3.6966 2.0569 6.8883 23 6 3.5508 0.8702 8.6666 24 7 3.2424 -0.3067 9.1690 25 14 4.1295 2.2437 9.7925 26 1 2.9578 3.0264 10.2612 27 1 4.8354 1.6609 10.9619 28 1 5.0555 3.1358 9.0495 29 1 -0.3633 0.4626 0.9178 30 1 -0.3633 0.5636 -0.8593 31 1 -0.3634 -1.0260 -0.0583 32 1 1.4559 -1.6664 -1.4138 33 1 2.1416 -0.1564 -2.0934 34 1 3.1576 -3.1272 -1.5744 35 1 4.1415 -2.0229 -2.5645 36 1 4.1271 -4.3993 0.1982 37 1 6.2062 -5.2860 1.2333 38 1 8.3749 -4.2211 0.6465 39 1 8.3998 -2.3321 -0.9329 40 1 4.1886 -1.2872 1.2113 41 1 3.1160 -2.6429 0.7605 42 1 2.7560 1.0338 2.0522 43 1 3.9823 0.9803 4.4493 44 1 2.2975 1.5122 4.6663 45 1 3.3168 -0.4612 10.1237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206090376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:56 Heat of formation + Delta-G solvation = 4.725648 kcal Electronic energy + Delta-G solvation = -25989.496683 eV Core-core repulsion = 22326.000739 eV Total energy + Delta-G solvation = -3663.495944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68318 -39.79897 -38.30908 -34.88912 -33.13744 -32.62185 -32.42419 -31.34604 -29.94883 -28.08105 -27.00839 -25.49731 -24.78013 -23.74645 -22.50442 -21.37460 -20.41401 -20.03284 -17.80705 -17.01753 -16.87033 -16.40081 -16.35716 -15.96839 -15.77685 -14.89635 -14.79646 -14.78536 -14.32233 -13.96182 -13.83584 -13.67243 -13.42566 -13.20072 -13.17468 -12.78740 -12.62300 -12.47418 -12.34720 -12.04625 -11.83303 -11.63339 -11.35129 -11.16633 -11.05928 -11.02375 -10.91007 -10.74580 -10.05438 -9.80966 -9.60826 -9.38541 -9.25152 -9.06679 -8.88428 -8.63623 -8.23419 -6.49527 -6.21505 -3.91809 0.86580 1.10186 3.03717 3.08655 3.22607 3.28215 3.32723 3.43845 3.72134 3.92590 3.97498 4.20906 4.29340 4.43861 4.53296 4.67014 4.76057 4.82867 4.92390 5.03841 5.11251 5.13227 5.13809 5.19359 5.23760 5.26455 5.38381 5.44083 5.46284 5.55669 5.60041 5.63164 5.78135 5.87980 5.89085 5.91553 5.94257 5.98615 6.01926 6.15926 6.46022 6.60084 6.69724 6.71642 7.60037 7.73672 7.81878 8.35632 8.62227 9.23972 10.85931 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011368 B = 0.002810 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.431879 B = 9963.111401 C =11676.968250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.090 0.910 4 C 0.040 3.960 5 N -0.505 5.505 6 C 0.097 3.903 7 C 0.130 3.870 8 C -0.165 4.165 9 C -0.072 4.072 10 C -0.173 4.173 11 C 0.098 3.902 12 N -0.467 5.467 13 C 0.024 3.976 14 C 0.142 3.858 15 H 0.097 0.903 16 N -0.728 5.728 17 C 0.533 3.467 18 O -0.519 6.519 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.156 0.844 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.400 0.600 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.258 -3.973 -24.591 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.108 0.892 4 C -0.088 4.088 5 N -0.229 5.229 6 C -0.031 4.031 7 C -0.008 4.008 8 C -0.185 4.185 9 C -0.098 4.098 10 C -0.193 4.193 11 C -0.059 4.059 12 N -0.176 5.176 13 C -0.105 4.105 14 C 0.036 3.964 15 H 0.115 0.885 16 N -0.382 5.382 17 C 0.319 3.681 18 O -0.393 6.393 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.173 0.827 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.234 0.766 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.114 -4.884 -24.629 25.133 hybrid contribution 0.458 1.159 1.155 1.699 sum 1.572 -3.725 -23.474 23.820 Atomic orbital electron populations 1.21775 0.93723 1.02214 1.02389 1.22359 0.96106 1.00120 0.93396 0.89155 1.23327 0.88536 0.98830 0.98071 1.64897 1.23239 1.32408 1.02347 1.21128 0.91710 0.92133 0.98158 1.21002 0.93431 0.92122 0.94239 1.22036 0.99698 0.98366 0.98422 1.21613 0.92290 0.98749 0.97171 1.22185 0.99130 0.98200 0.99809 1.22778 0.96512 0.93486 0.93105 1.67475 0.98105 1.27982 1.24052 1.23424 0.99486 0.98694 0.88857 1.21798 0.95557 0.91967 0.87101 0.88534 1.46063 1.70295 1.15690 1.06114 1.20338 0.76557 0.88461 0.82726 1.90689 1.46604 1.19634 1.82403 1.23535 1.04029 1.02220 1.00634 1.85359 1.87740 1.18244 0.92031 1.22874 1.51890 0.99392 0.94182 0.90936 1.24989 0.94966 0.96408 0.97208 1.70020 1.45434 1.21539 1.13354 0.86170 0.78816 0.80944 0.79595 1.20266 1.20755 1.19671 0.91879 0.92152 0.92409 0.93171 0.89433 0.92944 0.88697 0.85021 0.84644 0.84724 0.82720 0.89851 0.92902 0.76601 0.89243 0.89225 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.16 37.16 0.34 -0.79 16 2 C -0.10 -0.89 3.37 -88.76 -0.30 -1.19 16 3 H 0.09 0.78 7.76 -51.93 -0.40 0.38 16 4 C 0.04 0.33 6.00 -1.89 -0.01 0.32 16 5 N -0.50 -5.30 5.39 -231.89 -1.25 -6.55 16 6 C 0.10 0.93 5.35 -4.98 -0.03 0.90 16 7 C 0.13 1.46 5.50 -82.59 -0.45 1.01 16 8 C -0.16 -1.71 8.42 -39.44 -0.33 -2.04 16 9 C -0.07 -0.70 10.18 -39.28 -0.40 -1.10 16 10 C -0.17 -1.60 10.11 -39.44 -0.40 -1.99 16 11 C 0.10 1.00 11.18 -17.55 -0.20 0.81 16 12 N -0.47 -5.68 10.27 -9.47 -0.10 -5.78 16 13 C 0.02 0.30 5.27 -2.76 -0.01 0.28 16 14 C 0.14 1.72 2.92 -66.57 -0.19 1.52 16 15 H 0.10 1.33 7.26 -51.93 -0.38 0.95 16 16 N -0.73 -9.97 5.01 -52.49 -0.26 -10.23 16 17 C 0.53 9.96 7.85 -10.98 -0.09 9.87 16 18 O -0.52 -11.65 15.51 5.55 0.09 -11.57 16 19 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 20 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 21 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 22 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 25 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 32 H 0.05 0.37 7.73 -51.92 -0.40 -0.03 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.42 7.79 -51.93 -0.40 0.01 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.13 1.19 7.46 -52.48 -0.39 0.80 16 37 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 40 H 0.08 1.26 7.92 -51.93 -0.41 0.84 16 41 H 0.05 0.65 6.15 -51.93 -0.32 0.33 16 42 H 0.40 4.50 8.38 -40.82 -0.34 4.16 16 43 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -35.30 384.99 -10.70 -46.00 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.82 Total: 3.54 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.65 Total: -8.34 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.88 Total: -48.05 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.30 -10.70 -46.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.724 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds