Wall clock time and date at job start Tue Mar 31 2020 19:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.78764 * 2 1 4 4 C 1.54939 * 110.72330 * 236.75520 * 2 1 3 5 5 N 1.48537 * 103.22847 * 204.23141 * 4 2 1 6 6 C 1.46899 * 110.99989 * 159.72293 * 5 4 2 7 7 C 1.50698 * 109.46775 * 190.00060 * 6 5 4 8 8 C 1.38223 * 119.62372 * 94.99705 * 7 6 5 9 9 C 1.38627 * 119.16336 * 179.97438 * 8 7 6 10 10 C 1.38665 * 118.42105 * 0.02562 * 9 8 7 11 11 C 1.38184 * 119.16494 * 359.97438 * 10 9 8 12 12 N 1.31854 * 119.61312 * 274.71654 * 7 6 5 13 13 C 1.47894 * 105.82167 * 39.20440 * 5 4 2 14 14 C 1.53998 * 107.05997 * 334.66894 * 13 5 4 15 15 H 1.09007 * 110.39258 * 120.18043 * 14 13 5 16 16 N 1.46497 * 110.31181 * 242.31361 * 14 13 5 17 17 C 1.34777 * 119.99525 * 270.71198 * 16 14 13 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 14 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99727 * 25 23 21 27 27 H 1.48501 * 109.47302 * 209.99797 * 25 23 21 28 28 H 1.48501 * 109.46788 * 330.00118 * 25 23 21 29 29 H 1.09008 * 109.46868 * 296.74915 * 1 2 3 30 30 H 1.09001 * 109.47160 * 56.74176 * 1 2 3 31 31 H 1.09001 * 109.47447 * 176.74913 * 1 2 3 32 32 H 1.09011 * 110.66595 * 322.66230 * 4 2 1 33 33 H 1.08998 * 110.66888 * 85.62396 * 4 2 1 34 34 H 1.09003 * 109.46500 * 309.99515 * 6 5 4 35 35 H 1.09000 * 109.47351 * 69.99126 * 6 5 4 36 36 H 1.08010 * 120.41754 * 359.97438 * 8 7 6 37 37 H 1.08000 * 120.79134 * 179.97438 * 9 8 7 38 38 H 1.08001 * 120.42147 * 179.97438 * 10 9 8 39 39 H 1.08004 * 119.62126 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.92007 * 215.32399 * 13 5 4 41 41 H 1.09000 * 109.92085 * 94.02245 * 13 5 4 42 42 H 0.97000 * 120.00580 * 90.71944 * 16 14 13 43 43 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 44 44 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 45 45 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0782 -0.7944 -1.2120 5 7 3.4318 -1.2093 -0.7623 6 6 3.9211 -2.3497 -1.5483 7 6 5.1736 -2.8968 -0.9135 8 6 5.0859 -3.9603 -0.0350 9 6 6.2442 -4.4562 0.5430 10 6 7.4528 -3.8609 0.2148 11 6 7.4626 -2.8010 -0.6717 12 7 6.3411 -2.3588 -1.2069 13 6 3.2893 -1.5710 0.6646 14 6 2.0771 -0.7929 1.2092 15 1 1.3201 -1.4822 1.5833 16 7 2.4972 0.1249 2.2709 17 6 2.5241 -0.2936 3.5518 18 8 2.2009 -1.4302 3.8254 19 6 2.9621 0.6486 4.6433 20 16 2.8982 -0.2045 6.2383 21 6 3.4448 1.0909 7.3003 22 1 3.6966 2.0569 6.8883 23 6 3.5508 0.8702 8.6666 24 7 3.2424 -0.3067 9.1690 25 14 4.1295 2.2437 9.7925 26 1 2.9578 3.0264 10.2612 27 1 4.8354 1.6609 10.9619 28 1 5.0555 3.1358 9.0495 29 1 -0.3633 0.4626 0.9178 30 1 -0.3633 0.5636 -0.8593 31 1 -0.3634 -1.0260 -0.0583 32 1 1.4559 -1.6664 -1.4138 33 1 2.1416 -0.1564 -2.0934 34 1 3.1576 -3.1272 -1.5744 35 1 4.1415 -2.0229 -2.5645 36 1 4.1271 -4.3993 0.1982 37 1 6.2062 -5.2860 1.2333 38 1 8.3749 -4.2211 0.6465 39 1 8.3998 -2.3321 -0.9329 40 1 4.1886 -1.2872 1.2113 41 1 3.1160 -2.6429 0.7605 42 1 2.7560 1.0338 2.0522 43 1 3.9823 0.9803 4.4493 44 1 2.2975 1.5122 4.6663 45 1 3.3168 -0.4612 10.1237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206090376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:55 Heat of formation + Delta-G solvation = -20.704321 kcal Electronic energy + Delta-G solvation = -25990.599409 eV Core-core repulsion = 22326.000739 eV Total energy + Delta-G solvation = -3664.598670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.53792 -40.87456 -39.48912 -35.90806 -34.59556 -34.18883 -33.39335 -32.09768 -31.32888 -29.24347 -27.79075 -27.62348 -25.63049 -24.51071 -23.38902 -22.31388 -21.32351 -21.27780 -19.78122 -17.97359 -17.80477 -17.68552 -17.25710 -16.90119 -16.88556 -16.57564 -16.23013 -16.16813 -15.53095 -15.10944 -14.73936 -14.62102 -14.50623 -14.43549 -14.15981 -13.98052 -13.73286 -13.44873 -13.25862 -13.17569 -13.04395 -12.89823 -12.74952 -12.61218 -12.42856 -12.27138 -11.88238 -11.76427 -11.65567 -11.15064 -10.95159 -10.84066 -10.39795 -10.29556 -10.13690 -10.01153 -9.43933 -8.67541 -8.35637 -6.13641 0.10643 0.32986 1.25796 1.41779 1.45869 1.56550 1.58177 2.24043 2.27964 2.67092 2.98490 3.11694 3.23826 3.31314 3.51358 3.60533 3.76075 3.92572 3.98109 4.01897 4.09192 4.18867 4.22042 4.27800 4.33015 4.41632 4.48568 4.49955 4.54358 4.65662 4.71388 4.79318 4.83711 4.84678 4.87840 5.04595 5.16744 5.18789 5.24892 5.33319 5.40913 5.52400 5.72407 5.78946 5.94740 6.18885 6.48082 7.03989 7.05709 7.21683 8.73585 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011368 B = 0.002810 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.431879 B = 9963.111401 C =11676.968250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.099 0.901 4 C 0.044 3.956 5 N -0.512 5.512 6 C 0.098 3.902 7 C 0.115 3.885 8 C -0.177 4.177 9 C -0.085 4.085 10 C -0.174 4.174 11 C 0.084 3.916 12 N -0.494 5.494 13 C 0.036 3.964 14 C 0.138 3.862 15 H 0.079 0.921 16 N -0.704 5.704 17 C 0.536 3.464 18 O -0.563 6.563 19 C -0.130 4.130 20 S -0.147 6.147 21 C -0.548 4.548 22 H 0.081 0.919 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.259 1.259 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.177 0.823 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.415 0.585 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.528 -2.219 -26.125 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.117 0.883 4 C -0.084 4.084 5 N -0.237 5.237 6 C -0.030 4.030 7 C -0.023 4.023 8 C -0.198 4.198 9 C -0.111 4.111 10 C -0.194 4.194 11 C -0.072 4.072 12 N -0.203 5.203 13 C -0.094 4.094 14 C 0.032 3.968 15 H 0.098 0.902 16 N -0.357 5.357 17 C 0.322 3.678 18 O -0.441 6.441 19 C -0.282 4.282 20 S 0.080 5.920 21 C -0.696 4.696 22 H 0.100 0.900 23 C -0.190 4.190 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.192 1.192 27 H -0.202 1.202 28 H -0.183 1.183 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.157 0.843 37 H 0.170 0.830 38 H 0.177 0.823 39 H 0.194 0.806 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.252 0.748 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.381 -3.098 -26.224 26.443 hybrid contribution 0.394 0.582 1.499 1.656 sum 1.775 -2.516 -24.725 24.916 Atomic orbital electron populations 1.21758 0.92714 1.02570 1.02729 1.22347 0.96783 1.00050 0.91708 0.88285 1.23421 0.87335 0.99484 0.98131 1.64875 1.24746 1.32864 1.01217 1.21182 0.91521 0.92300 0.97967 1.21284 0.93843 0.92505 0.94712 1.22225 1.00413 0.98535 0.98593 1.21958 0.92446 0.99306 0.97372 1.22494 0.99992 0.97669 0.99264 1.23232 0.96919 0.93898 0.93185 1.67483 0.98872 1.28890 1.25092 1.23160 0.97807 0.98330 0.90075 1.21964 0.95286 0.92061 0.87467 0.90243 1.45837 1.68486 1.16636 1.04747 1.20060 0.76407 0.87460 0.83892 1.90678 1.48941 1.21241 1.83232 1.23376 1.05598 1.02181 0.97013 1.85514 1.88146 1.21172 0.97132 1.23208 1.51981 0.99567 0.94828 0.90050 1.26117 0.94758 0.99198 0.98973 1.70180 1.46628 1.24016 1.13886 0.84960 0.78627 0.77360 0.77080 1.19227 1.20219 1.18291 0.93112 0.89972 0.92350 0.91911 0.87488 0.91365 0.88067 0.84312 0.83049 0.82258 0.80647 0.92962 0.93391 0.74803 0.87708 0.87180 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.16 71.98 0.66 -1.22 16 2 C -0.09 -1.38 3.37 -9.59 -0.03 -1.41 16 3 H 0.10 1.40 7.76 -2.39 -0.02 1.39 16 4 C 0.04 0.60 6.00 86.65 0.52 1.12 16 5 N -0.51 -10.02 5.39 -887.56 -4.78 -14.81 16 6 C 0.10 1.77 5.35 85.56 0.46 2.22 16 7 C 0.11 2.54 5.50 42.55 0.23 2.77 16 8 C -0.18 -3.69 8.42 22.36 0.19 -3.50 16 9 C -0.08 -1.62 10.18 22.46 0.23 -1.39 16 10 C -0.17 -3.08 10.11 22.36 0.23 -2.85 16 11 C 0.08 1.67 11.18 84.67 0.95 2.62 16 12 N -0.49 -11.85 10.27 -183.88 -1.89 -13.74 16 13 C 0.04 0.87 5.27 86.45 0.46 1.32 16 14 C 0.14 3.23 2.92 45.87 0.13 3.37 16 15 H 0.08 2.19 7.26 -2.38 -0.02 2.17 16 16 N -0.70 -18.68 5.01 -438.36 -2.20 -20.87 16 17 C 0.54 20.10 7.85 87.66 0.69 20.79 16 18 O -0.56 -26.07 15.51 -3.04 -0.05 -26.12 16 19 C -0.13 -5.28 6.16 71.24 0.44 -4.84 16 20 S -0.15 -8.21 20.57 -56.49 -1.16 -9.38 16 21 C -0.55 -31.57 9.50 67.95 0.65 -30.93 16 22 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 23 C 0.01 0.82 5.49 84.86 0.47 1.29 16 24 N -0.91 -56.08 13.22 21.65 0.29 -55.80 16 25 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 28 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 29 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 32 H 0.06 0.74 7.73 -2.38 -0.02 0.72 16 33 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 0.99 7.79 -2.39 -0.02 0.97 16 35 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.14 2.53 7.46 -2.91 -0.02 2.51 16 37 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 38 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 39 H 0.18 2.48 8.06 -2.91 -0.02 2.45 16 40 H 0.05 1.60 7.92 -2.39 -0.02 1.58 16 41 H 0.05 1.20 6.15 -2.39 -0.01 1.18 16 42 H 0.41 8.55 8.38 -92.71 -0.78 7.77 16 43 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 44 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 45 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -79.00 384.99 -1.29 -80.29 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.22 Total: 25.25 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 6.26 Total: -10.65 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -8.58 Total: -105.22 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.05 Total: -26.12 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.38 kcal Total: -79.00 -1.29 -80.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.584 kcal (2) G-P(sol) polarization free energy of solvation -78.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds