Wall clock time and date at job start Tue Mar 31 2020 19:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.64611 * 2 1 4 4 C 1.54937 * 110.72841 * 236.84583 * 2 1 3 5 5 N 1.48529 * 103.22994 * 204.22737 * 4 2 1 6 6 C 1.46902 * 110.99964 * 159.71596 * 5 4 2 7 7 C 1.50702 * 109.47183 * 190.00024 * 6 5 4 8 8 C 1.38676 * 120.41567 * 90.00183 * 7 6 5 9 9 C 1.38631 * 118.41877 * 180.02562 * 8 7 6 10 10 C 1.38229 * 119.15985 * 359.97438 * 9 8 7 11 11 N 1.31848 * 120.76542 * 0.02562 * 10 9 8 12 12 C 1.31891 * 121.72778 * 359.69747 * 11 10 9 13 13 C 1.47906 * 105.81771 * 39.20728 * 5 4 2 14 14 C 1.53994 * 107.06107 * 334.66596 * 13 5 4 15 15 H 1.09000 * 110.30870 * 120.14358 * 14 13 5 16 16 N 1.46495 * 110.30987 * 242.31610 * 14 13 5 17 17 C 1.34779 * 119.99429 * 270.71058 * 16 14 13 18 18 O 1.21280 * 120.00350 * 0.02562 * 17 16 14 19 19 C 1.50705 * 119.99709 * 180.02562 * 17 16 14 20 20 S 1.81004 * 109.47136 * 180.02562 * 19 17 16 21 21 C 1.76195 * 100.00102 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00098 * 0.02562 * 21 20 19 23 23 C 1.38802 * 120.00334 * 179.97438 * 21 20 19 24 24 N 1.31628 * 119.99453 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00023 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47504 * 60.00653 * 25 23 21 27 27 H 1.48508 * 109.46729 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47361 * 299.99837 * 25 23 21 29 29 H 1.09002 * 109.47153 * 181.70023 * 1 2 3 30 30 H 1.09001 * 109.46832 * 61.70214 * 1 2 3 31 31 H 1.09004 * 109.47261 * 301.70195 * 1 2 3 32 32 H 1.09004 * 110.66275 * 322.66410 * 4 2 1 33 33 H 1.08999 * 110.66909 * 85.62100 * 4 2 1 34 34 H 1.09000 * 109.47391 * 310.00144 * 6 5 4 35 35 H 1.08994 * 109.47006 * 70.00334 * 6 5 4 36 36 H 1.07991 * 120.79247 * 359.97438 * 8 7 6 37 37 H 1.08000 * 120.42258 * 180.02562 * 9 8 7 38 38 H 1.08003 * 119.61506 * 179.97438 * 10 9 8 39 39 H 1.07998 * 119.62005 * 180.31283 * 12 11 10 40 40 H 1.08998 * 109.92147 * 94.02483 * 13 5 4 41 41 H 1.09006 * 109.91680 * 215.12041 * 13 5 4 42 42 H 0.96997 * 120.00576 * 90.71732 * 16 14 13 43 43 H 1.09002 * 109.47045 * 300.00185 * 19 17 16 44 44 H 1.08998 * 109.47571 * 59.99937 * 19 17 16 45 45 H 0.96999 * 119.99736 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0784 -0.7925 -1.2132 5 7 3.4318 -1.2079 -0.7641 6 6 3.9212 -2.3472 -1.5518 7 6 5.1738 -2.8951 -0.9179 8 6 5.0963 -3.8935 0.0414 9 6 6.2745 -4.3669 0.5977 10 6 7.4789 -3.8322 0.1803 11 7 7.5146 -2.8834 -0.7346 12 6 6.4144 -2.4129 -1.2892 13 6 3.2893 -1.5720 0.6623 14 6 2.0770 -0.7947 1.2080 15 1 1.3207 -1.4859 1.5799 16 7 2.4971 0.1214 2.2712 17 6 2.5239 -0.2992 3.5514 18 8 2.2007 -1.4362 3.8231 19 6 2.9554 0.6433 4.6453 20 16 2.8860 -0.2106 6.2397 21 6 3.4255 1.0853 7.3046 22 1 3.6775 2.0520 6.8941 23 6 3.5258 0.8642 8.6712 24 7 3.2183 -0.3138 9.1716 25 14 4.0972 2.2383 9.8002 26 1 3.1649 3.3890 9.6906 27 1 4.1187 1.7500 11.2026 28 1 5.4626 2.6681 9.4052 29 1 -0.3633 -1.0272 0.0305 30 1 -0.3633 0.4872 -0.9049 31 1 -0.3634 0.5401 0.8744 32 1 1.4561 -1.6641 -1.4164 33 1 2.1417 -0.1530 -2.0936 34 1 3.1578 -3.1247 -1.5792 35 1 4.1418 -2.0187 -2.5674 36 1 4.1408 -4.2922 0.3484 37 1 6.2518 -5.1442 1.3472 38 1 8.4013 -4.1952 0.6091 39 1 6.4836 -1.6388 -2.0391 40 1 3.1161 -2.6440 0.7565 41 1 4.1900 -1.2922 1.2088 42 1 2.7558 1.0306 2.0539 43 1 3.9759 0.9766 4.4561 44 1 2.2894 1.5059 4.6654 45 1 3.2888 -0.4685 10.1266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206090395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:59 Heat of formation + Delta-G solvation = 3.323336 kcal Electronic energy + Delta-G solvation = -25984.845898 eV Core-core repulsion = 22321.289146 eV Total energy + Delta-G solvation = -3663.556752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.70163 -39.83201 -38.36906 -35.11962 -33.31614 -32.42979 -32.30602 -31.45291 -29.96085 -28.04868 -26.92698 -25.50293 -24.79842 -23.78391 -22.50039 -21.43718 -20.44405 -20.06808 -17.81702 -17.25300 -16.96411 -16.51496 -16.37045 -15.89532 -15.64866 -14.88646 -14.80773 -14.79658 -14.33760 -13.98094 -13.88237 -13.64434 -13.46851 -13.35567 -13.15193 -12.79955 -12.66820 -12.54833 -12.37596 -12.16103 -11.95734 -11.52674 -11.38363 -11.21486 -11.05157 -11.03661 -10.95812 -10.75888 -9.99757 -9.82424 -9.63872 -9.40922 -9.27142 -9.06433 -8.91156 -8.70493 -8.24695 -6.50241 -6.21768 -3.92309 0.87480 1.07795 3.02197 3.06196 3.23732 3.27559 3.31151 3.47240 3.70148 3.85681 4.12846 4.20667 4.28249 4.39111 4.53667 4.55163 4.70761 4.76282 4.77617 5.01627 5.08338 5.12288 5.13447 5.16909 5.17676 5.23340 5.32586 5.39966 5.48070 5.55386 5.58186 5.59119 5.74987 5.84189 5.87417 5.90010 5.91504 5.95795 6.01724 6.14538 6.47267 6.53355 6.64580 6.66977 7.59315 7.70789 7.78005 8.35006 8.59813 9.23573 10.85653 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011343 B = 0.002804 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.972854 B = 9983.414022 C =11718.524098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.090 0.910 4 C 0.040 3.960 5 N -0.510 5.510 6 C 0.090 3.910 7 C -0.137 4.137 8 C -0.067 4.067 9 C -0.169 4.169 10 C 0.098 3.902 11 N -0.487 5.487 12 C 0.117 3.883 13 C 0.025 3.975 14 C 0.142 3.858 15 H 0.096 0.904 16 N -0.728 5.728 17 C 0.533 3.467 18 O -0.519 6.519 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.052 0.948 41 H 0.084 0.916 42 H 0.399 0.601 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 -3.187 -25.283 25.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.108 0.892 4 C -0.088 4.088 5 N -0.234 5.234 6 C -0.038 4.038 7 C -0.139 4.139 8 C -0.094 4.094 9 C -0.189 4.189 10 C -0.059 4.059 11 N -0.195 5.195 12 C -0.040 4.040 13 C -0.104 4.104 14 C 0.036 3.964 15 H 0.114 0.886 16 N -0.382 5.382 17 C 0.319 3.681 18 O -0.393 6.393 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.173 0.827 39 H 0.172 0.828 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.234 0.766 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.313 -4.458 -24.982 25.378 hybrid contribution -0.462 1.550 0.803 1.806 sum -0.150 -2.908 -24.179 24.353 Atomic orbital electron populations 1.21778 0.93749 1.02296 1.02313 1.22360 0.96137 1.00089 0.93407 0.89164 1.23317 0.88658 0.98842 0.98020 1.64947 1.23306 1.32546 1.02567 1.21137 0.93149 0.92014 0.97486 1.20727 0.96488 0.97831 0.98901 1.21581 0.99019 0.94796 0.94010 1.22182 0.93436 1.01943 1.01346 1.22805 0.97927 0.92181 0.92954 1.67717 1.31947 1.10725 1.09102 1.22628 0.87032 0.96987 0.97397 1.23426 0.99509 0.98677 0.88753 1.21800 0.95590 0.91996 0.87060 0.88572 1.46059 1.70337 1.15665 1.06125 1.20345 0.76514 0.88471 0.82734 1.90690 1.46519 1.19629 1.82460 1.23536 1.04068 1.02210 1.00621 1.85358 1.87914 1.18130 0.91913 1.22834 1.52196 0.99307 0.94117 0.90980 1.24986 0.94918 0.96419 0.97208 1.70006 1.45309 1.21526 1.13501 0.86228 0.79259 0.81065 0.78983 1.19926 1.20806 1.19912 0.92421 0.92159 0.91880 0.93198 0.89489 0.93434 0.89258 0.85074 0.84566 0.82730 0.82813 0.92948 0.89716 0.76602 0.89235 0.89225 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.16 37.16 0.34 -0.74 16 2 C -0.10 -0.83 3.36 -88.76 -0.30 -1.13 16 3 H 0.09 0.72 7.76 -51.93 -0.40 0.32 16 4 C 0.04 0.29 6.00 -1.90 -0.01 0.28 16 5 N -0.51 -4.67 5.39 -231.89 -1.25 -5.92 16 6 C 0.09 0.71 5.21 -4.97 -0.03 0.69 16 7 C -0.14 -1.32 4.74 -104.48 -0.49 -1.81 16 8 C -0.07 -0.67 8.46 -39.27 -0.33 -1.00 16 9 C -0.17 -1.66 10.11 -39.44 -0.40 -2.06 16 10 C 0.10 1.02 11.18 -17.55 -0.20 0.83 16 11 N -0.49 -5.77 10.36 -13.25 -0.14 -5.91 16 12 C 0.12 1.21 10.86 -17.55 -0.19 1.02 16 13 C 0.03 0.29 5.16 -2.75 -0.01 0.28 16 14 C 0.14 1.64 2.92 -66.57 -0.19 1.45 16 15 H 0.10 1.29 7.24 -51.93 -0.38 0.91 16 16 N -0.73 -9.66 5.01 -52.49 -0.26 -9.92 16 17 C 0.53 9.81 7.85 -10.98 -0.09 9.73 16 18 O -0.52 -11.52 15.51 5.56 0.09 -11.43 16 19 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 21 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 22 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 25 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.34 7.76 -51.93 -0.40 -0.06 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.35 7.85 -51.93 -0.41 -0.06 16 35 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.13 1.16 7.12 -52.49 -0.37 0.79 16 37 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.16 1.24 8.06 -52.48 -0.42 0.81 16 39 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.05 0.61 5.87 -51.93 -0.30 0.31 16 41 H 0.08 1.20 7.93 -51.93 -0.41 0.78 16 42 H 0.40 4.31 8.38 -40.82 -0.34 3.97 16 43 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 384.22 15.07 5.79 5.79 Total: -1.00 -34.94 384.22 -10.55 -45.49 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.79 Total: 3.15 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -1.48 Total: -8.38 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.92 Total: -47.23 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.94 -10.55 -45.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.816 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds