Wall clock time and date at job start Tue Mar 31 2020 19:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.06736 * 2 1 4 4 C 1.53994 * 109.91834 * 238.79903 * 2 1 3 5 5 H 1.08997 * 110.30897 * 358.33294 * 4 2 1 6 6 N 1.46499 * 110.31269 * 120.50247 * 4 2 1 7 7 C 1.34768 * 120.00350 * 202.16965 * 6 4 2 8 8 O 1.21281 * 120.00086 * 359.97438 * 7 6 4 9 9 C 1.50698 * 120.00038 * 180.02562 * 7 6 4 10 10 S 1.81001 * 109.47206 * 180.02562 * 9 7 6 11 11 C 1.76206 * 100.00056 * 179.97438 * 10 9 7 12 12 H 1.07991 * 120.00057 * 359.97438 * 11 10 9 13 13 C 1.38802 * 119.99531 * 179.97438 * 11 10 9 14 14 N 1.31623 * 120.00430 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99362 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46887 * 90.00539 * 15 13 11 17 17 H 1.48498 * 109.46882 * 209.99723 * 15 13 11 18 18 H 1.48500 * 109.47374 * 330.00138 * 15 13 11 19 19 C 1.54601 * 105.14038 * 239.42259 * 4 2 1 20 20 C 1.54942 * 102.91760 * 338.04164 * 19 4 2 21 21 N 1.47901 * 109.91842 * 121.20670 * 2 1 3 22 22 C 1.46900 * 111.00129 * 265.19782 * 21 2 1 23 23 C 1.50703 * 109.47138 * 312.47832 * 22 21 2 24 24 C 1.38675 * 120.41865 * 89.99691 * 23 22 21 25 25 C 1.38629 * 118.41929 * 179.72534 * 24 23 22 26 26 C 1.38221 * 119.16236 * 0.02562 * 25 24 23 27 27 N 1.31861 * 120.76536 * 359.97438 * 26 25 24 28 28 C 1.31888 * 121.72133 * 0.02562 * 27 26 25 29 29 H 1.08993 * 109.47440 * 300.24977 * 1 2 3 30 30 H 1.09006 * 109.47136 * 60.25131 * 1 2 3 31 31 H 1.09000 * 109.46900 * 180.24609 * 1 2 3 32 32 H 0.97003 * 119.99595 * 22.17236 * 6 4 2 33 33 H 1.09004 * 109.47279 * 299.99553 * 9 7 6 34 34 H 1.09003 * 109.47466 * 59.99836 * 9 7 6 35 35 H 0.97005 * 120.00066 * 179.97438 * 14 13 11 36 36 H 1.09003 * 110.72377 * 219.68584 * 19 4 2 37 37 H 1.08998 * 110.87797 * 96.46731 * 19 4 2 38 38 H 1.08997 * 110.66386 * 278.97923 * 20 19 4 39 39 H 1.09000 * 110.80973 * 155.92045 * 20 19 4 40 40 H 1.08999 * 109.47072 * 192.47644 * 22 21 2 41 41 H 1.09002 * 109.46766 * 72.47397 * 22 21 2 42 42 H 1.08003 * 120.78833 * 359.74916 * 24 23 22 43 43 H 1.07999 * 120.41849 * 180.02562 * 25 24 23 44 44 H 1.07992 * 119.62125 * 179.97438 * 26 25 24 45 45 H 1.08003 * 119.61498 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7500 -1.2384 5 1 1.2228 -1.1401 -1.8250 6 7 2.8835 0.1379 -2.0574 7 6 3.0743 -0.1332 -3.3637 8 8 2.5602 -1.1126 -3.8612 9 6 3.9274 0.7798 -4.2059 10 16 3.9896 0.1525 -5.9026 11 6 5.0204 1.3747 -6.6432 12 1 5.3998 2.1930 -6.0494 13 6 5.3447 1.2856 -7.9899 14 7 4.8827 0.2879 -8.7135 15 14 6.4369 2.5817 -8.7751 16 1 7.8582 2.1668 -8.6606 17 1 6.0782 2.7287 -10.2086 18 1 6.2425 3.8798 -8.0805 19 6 2.9059 -1.9117 -0.6763 20 6 3.2681 -1.4185 0.7472 21 7 2.0338 -0.7205 1.1893 22 6 2.3211 0.2122 2.2873 23 6 3.1230 1.3750 1.7619 24 6 2.4844 2.5076 1.2799 25 6 3.2627 3.5550 0.8118 26 6 4.6395 3.4362 0.8404 27 7 5.2127 2.3438 1.3059 28 6 4.5040 1.3280 1.7591 29 1 -0.3634 0.5177 0.8877 30 1 -0.3634 0.5099 -0.8923 31 1 -0.3633 -1.0277 0.0044 32 1 3.2950 0.9209 -1.6594 33 1 3.4979 1.7817 -4.2050 34 1 4.9362 0.8166 -3.7946 35 1 5.1090 0.2259 -9.6548 36 1 3.8052 -2.0557 -1.2751 37 1 2.3241 -2.8322 -0.6291 38 1 4.1097 -0.7267 0.7120 39 1 3.4905 -2.2598 1.4036 40 1 2.8910 -0.3021 3.0611 41 1 1.3843 0.5775 2.7081 42 1 1.4064 2.5724 1.2698 43 1 2.7990 4.4525 0.4297 44 1 5.2528 4.2474 0.4772 45 1 5.0089 0.4496 2.1332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264688618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:29 Heat of formation + Delta-G solvation = -13.695883 kcal Electronic energy + Delta-G solvation = -26816.397157 eV Core-core repulsion = 23152.102396 eV Total energy + Delta-G solvation = -3664.294761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93241 -40.81130 -39.48211 -35.85694 -34.60795 -33.98304 -33.08594 -32.20041 -31.44872 -30.09820 -27.71328 -26.60633 -26.06311 -24.60948 -23.39595 -22.55210 -21.41400 -20.93358 -19.79698 -18.14721 -17.91583 -17.78970 -17.23963 -16.90293 -16.88131 -16.47649 -16.29506 -15.92128 -15.58576 -15.38553 -14.81488 -14.60849 -14.49079 -14.35051 -14.07983 -13.84466 -13.78788 -13.49739 -13.19496 -13.16454 -12.92891 -12.88985 -12.66471 -12.62832 -12.37465 -12.29990 -11.99909 -11.84126 -11.72651 -11.16372 -11.00834 -10.63714 -10.46828 -10.31858 -10.17279 -9.99095 -9.46904 -8.69519 -8.36733 -6.15232 0.10378 0.29884 1.23340 1.40954 1.44179 1.53638 1.55143 2.16995 2.25292 2.77683 2.97466 3.01536 3.28649 3.42531 3.52232 3.63139 3.80334 3.88608 3.92825 3.99539 4.07995 4.09304 4.16778 4.21691 4.33252 4.42433 4.45771 4.47164 4.63394 4.73714 4.77243 4.82509 4.88161 4.95274 4.98963 5.02719 5.07745 5.16087 5.22259 5.35221 5.39444 5.43232 5.74553 5.83188 5.98019 6.17524 6.35881 7.01713 7.04490 7.14879 8.72504 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013838 B = 0.003067 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.928000 B = 9128.647002 C =10389.748047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.050 3.950 3 H 0.081 0.919 4 C 0.134 3.866 5 H 0.078 0.922 6 N -0.707 5.707 7 C 0.537 3.463 8 O -0.558 6.558 9 C -0.129 4.129 10 S -0.144 6.144 11 C -0.549 4.549 12 H 0.081 0.919 13 C 0.015 3.985 14 N -0.910 5.910 15 Si 0.998 3.002 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.258 1.258 19 C -0.134 4.134 20 C 0.035 3.965 21 N -0.494 5.494 22 C 0.089 3.911 23 C -0.174 4.174 24 C -0.069 4.069 25 C -0.171 4.171 26 C 0.083 3.917 27 N -0.514 5.514 28 C 0.093 3.907 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.405 0.595 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.272 0.728 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.154 0.846 43 H 0.157 0.843 44 H 0.166 0.834 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.297 5.511 27.958 29.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.058 4.058 3 H 0.099 0.901 4 C 0.029 3.971 5 H 0.096 0.904 6 N -0.360 5.360 7 C 0.323 3.677 8 O -0.435 6.435 9 C -0.281 4.281 10 S 0.084 5.916 11 C -0.697 4.697 12 H 0.099 0.901 13 C -0.190 4.190 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.182 1.182 19 C -0.174 4.174 20 C -0.093 4.093 21 N -0.216 5.216 22 C -0.039 4.039 23 C -0.177 4.177 24 C -0.096 4.096 25 C -0.191 4.191 26 C -0.073 4.073 27 N -0.222 5.222 28 C -0.064 4.064 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.240 0.760 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.172 0.828 43 H 0.175 0.825 44 H 0.183 0.817 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.668 3.354 27.211 28.216 hybrid contribution 1.258 2.493 -0.580 2.852 sum -5.410 5.848 26.631 27.797 Atomic orbital electron populations 1.21695 0.92067 1.02814 1.02304 1.22875 0.97565 0.97505 0.87892 0.90149 1.21927 0.93190 0.90437 0.91529 0.90377 1.45908 1.52387 1.29494 1.08194 1.20018 0.80155 0.85011 0.82541 1.90692 1.50106 1.29769 1.72966 1.23357 1.02750 1.02572 0.99380 1.85536 1.66772 1.38326 1.01012 1.23196 1.35688 1.12564 0.98227 0.90107 1.26111 0.97518 0.98707 0.96620 1.70174 1.44295 1.31889 1.08292 0.84968 0.77869 0.77945 0.77297 1.19340 1.20121 1.18179 1.22868 0.99737 0.98480 0.96277 1.23350 0.91798 0.98966 0.95173 1.65199 1.25668 1.24475 1.06258 1.21460 0.99883 0.88620 0.93981 1.21699 0.95682 0.98315 1.02046 1.21839 1.01627 0.91831 0.94256 1.22458 0.94908 1.00936 1.00786 1.23160 0.93794 0.95442 0.94945 1.67709 1.42258 1.01671 1.10605 1.22929 0.91152 0.96616 0.95677 0.90366 0.92600 0.92119 0.75974 0.87486 0.87989 0.91919 0.92581 0.89746 0.93209 0.87995 0.87988 0.87729 0.82812 0.82499 0.81663 0.82414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.32 71.98 0.67 -1.20 16 2 C 0.05 0.81 2.58 45.06 0.12 0.92 16 3 H 0.08 1.20 3.49 -2.39 -0.01 1.19 16 4 C 0.13 3.17 2.93 45.87 0.13 3.31 16 5 H 0.08 2.22 7.19 -2.39 -0.02 2.21 16 6 N -0.71 -18.99 5.08 -438.38 -2.23 -21.22 16 7 C 0.54 20.32 7.84 87.66 0.69 21.00 16 8 O -0.56 -26.05 15.56 -3.03 -0.05 -26.10 16 9 C -0.13 -5.29 6.16 71.24 0.44 -4.85 16 10 S -0.14 -8.06 20.57 -56.49 -1.16 -9.22 16 11 C -0.55 -31.67 9.50 67.95 0.65 -31.03 16 12 H 0.08 4.35 7.80 -2.92 -0.02 4.33 16 13 C 0.02 0.88 5.49 84.86 0.47 1.35 16 14 N -0.91 -56.13 13.22 21.65 0.29 -55.84 16 15 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 17 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 19 C -0.13 -3.01 6.78 31.80 0.22 -2.79 16 20 C 0.03 0.55 6.39 86.65 0.55 1.10 16 21 N -0.49 -6.79 5.17 -862.61 -4.46 -11.25 16 22 C 0.09 0.86 5.74 85.56 0.49 1.35 16 23 C -0.17 -2.15 4.04 -19.77 -0.08 -2.23 16 24 C -0.07 -0.77 7.53 22.47 0.17 -0.60 16 25 C -0.17 -2.08 10.11 22.36 0.23 -1.86 16 26 C 0.08 1.34 11.18 84.68 0.95 2.29 16 27 N -0.51 -10.23 10.36 -195.85 -2.03 -12.26 16 28 C 0.09 1.50 9.23 84.67 0.78 2.28 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.40 9.12 8.28 -92.71 -0.77 8.35 16 33 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 34 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 35 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 36 H 0.06 1.52 8.05 -2.39 -0.02 1.50 16 37 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 0.82 5.33 -2.39 -0.01 0.81 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.10 0.78 8.03 -2.39 -0.02 0.76 16 41 H 0.10 0.75 8.10 -2.39 -0.02 0.73 16 42 H 0.15 1.10 7.96 -2.91 -0.02 1.08 16 43 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 44 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 45 H 0.16 2.14 7.54 -2.91 -0.02 2.12 16 Total: -1.00 -77.11 378.85 -0.91 -78.02 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.24 Total: 23.01 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 6.46 Total: -10.95 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -8.43 Total: -100.57 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.22 kcal Total: -77.11 -0.91 -78.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264688618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.325 kcal (2) G-P(sol) polarization free energy of solvation -77.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds