Wall clock time and date at job start Tue Mar 31 2020 19:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99601 * 2 1 4 4 C 1.54327 * 109.98984 * 238.95900 * 2 1 3 5 5 C 1.55156 * 103.02221 * 218.66587 * 4 2 1 6 6 H 1.08998 * 111.00676 * 277.23890 * 5 4 2 7 7 N 1.46899 * 111.00839 * 153.38068 * 5 4 2 8 8 C 1.46904 * 111.00241 * 161.35341 * 7 5 4 9 9 C 1.50702 * 109.47014 * 180.02562 * 8 7 5 10 10 C 1.38673 * 120.41977 * 89.99843 * 9 8 7 11 11 C 1.38621 * 118.41848 * 179.97438 * 10 9 8 12 12 C 1.38227 * 119.16734 * 0.02562 * 11 10 9 13 13 N 1.31860 * 120.75918 * 0.02562 * 12 11 10 14 14 C 1.31888 * 121.72379 * 359.70310 * 13 12 11 15 15 C 1.54918 * 101.58012 * 35.30827 * 5 4 2 16 16 N 1.47022 * 109.88107 * 121.09522 * 2 1 3 17 17 C 1.34780 * 125.64445 * 298.39549 * 16 2 1 18 18 O 1.21280 * 120.00423 * 359.71250 * 17 16 2 19 19 C 1.50701 * 119.99795 * 179.71926 * 17 16 2 20 20 S 1.81002 * 109.47156 * 179.97438 * 19 17 16 21 21 C 1.76193 * 100.00049 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00026 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00056 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99640 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00053 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47315 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47332 * 119.99854 * 25 23 21 28 28 H 1.48499 * 109.47328 * 240.00154 * 25 23 21 29 29 H 1.09000 * 109.47448 * 300.36559 * 1 2 3 30 30 H 1.09006 * 109.47364 * 60.36346 * 1 2 3 31 31 H 1.09001 * 109.47307 * 180.35888 * 1 2 3 32 32 H 1.09000 * 110.85610 * 100.20042 * 4 2 1 33 33 H 1.09003 * 110.67447 * 337.04882 * 4 2 1 34 34 H 1.00903 * 110.99869 * 37.39556 * 7 5 4 35 35 H 1.08998 * 109.46686 * 299.99957 * 8 7 5 36 36 H 1.08999 * 109.46824 * 59.99828 * 8 7 5 37 37 H 1.08000 * 120.78713 * 0.02562 * 10 9 8 38 38 H 1.08001 * 120.41905 * 179.97438 * 11 10 9 39 39 H 1.07990 * 119.62260 * 179.97438 * 12 11 10 40 40 H 1.07996 * 119.61581 * 180.31622 * 14 13 12 41 41 H 1.09003 * 110.36670 * 204.15269 * 15 5 4 42 42 H 1.09001 * 110.46005 * 81.87572 * 15 5 4 43 43 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 44 44 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 45 45 H 0.97010 * 119.99946 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 6 3.2863 -1.5184 -0.6914 6 1 4.1669 -0.8769 -0.6578 7 7 3.5482 -2.7276 -1.4833 8 6 4.9186 -3.2113 -1.2682 9 6 5.1499 -4.4496 -2.0954 10 6 5.6394 -4.3485 -3.3889 11 6 5.8371 -5.5143 -4.1124 12 6 5.5413 -6.7301 -3.5250 13 7 5.0762 -6.7881 -2.2925 14 6 4.8808 -5.7002 -1.5730 15 6 2.8098 -1.8825 0.7370 16 7 2.0300 -0.7141 1.1839 17 6 1.8073 -0.3619 2.4657 18 8 1.1474 0.6239 2.7180 19 6 2.3783 -1.1932 3.5856 20 16 1.9086 -0.4674 5.1758 21 6 2.6864 -1.6055 6.2732 22 1 3.2437 -2.4419 5.8778 23 6 2.5820 -1.4277 7.6458 24 7 1.9024 -0.4086 8.1276 25 14 3.4060 -2.6346 8.8093 26 1 4.1020 -3.6842 8.0223 27 1 4.3916 -1.9135 9.6541 28 1 2.3790 -3.2661 9.6763 29 1 -0.3634 0.5195 0.8867 30 1 -0.3634 0.5082 -0.8933 31 1 -0.3634 -1.0276 0.0064 32 1 2.3597 -0.0452 -2.0192 33 1 1.3066 -1.4406 -1.6225 34 1 3.3723 -2.5633 -2.4632 35 1 5.6274 -2.4385 -1.5655 36 1 5.0592 -3.4470 -0.2133 37 1 5.8622 -3.3845 -3.8219 38 1 6.2167 -5.4732 -5.1227 39 1 5.6921 -7.6428 -4.0821 40 1 4.5032 -5.7876 -0.5650 41 1 3.6655 -2.0412 1.3934 42 1 2.1805 -2.7722 0.7135 43 1 1.9877 -2.2087 3.5198 44 1 3.4650 -1.2158 3.5037 45 1 1.8298 -0.2841 9.0869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283943025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:18 Heat of formation + Delta-G solvation = 3.790233 kcal Electronic energy + Delta-G solvation = -25505.060143 eV Core-core repulsion = 21841.523636 eV Total energy + Delta-G solvation = -3663.536506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.59045 -40.04410 -37.76765 -35.77805 -32.93150 -32.41899 -32.18604 -31.97931 -29.46572 -28.65747 -25.94553 -25.79111 -25.45980 -23.93693 -22.41480 -21.81781 -21.06297 -18.94038 -17.67609 -17.49598 -17.05287 -16.80301 -16.38977 -15.92555 -15.17861 -14.95298 -14.87273 -14.79218 -14.32608 -14.11210 -13.97247 -13.75494 -13.48703 -13.33545 -13.11014 -12.99317 -12.80136 -12.58469 -12.47430 -12.03431 -11.78684 -11.69973 -11.40067 -11.09002 -11.05152 -11.00181 -10.88355 -10.74224 -10.23788 -9.81860 -9.79174 -9.43070 -9.34544 -9.06325 -8.93540 -8.47723 -8.21481 -6.48927 -6.20725 -3.91025 0.69563 0.88139 2.88546 3.08594 3.22548 3.25526 3.31397 3.36795 3.59799 3.85625 4.06122 4.18396 4.21481 4.37177 4.38888 4.43129 4.55789 4.61218 4.75893 4.94092 4.98905 5.06671 5.10071 5.14576 5.17459 5.35246 5.36623 5.40554 5.44058 5.53897 5.62869 5.63665 5.68163 5.69813 5.76308 5.82895 5.91972 6.07346 6.15734 6.29249 6.30732 6.50663 6.59070 6.85652 7.61006 7.62237 7.71020 8.36604 8.59330 9.24781 10.86752 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010593 B = 0.002573 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.739624 B =10877.983875 C =13204.027554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.074 0.926 4 C -0.127 4.127 5 C 0.072 3.928 6 H 0.064 0.936 7 N -0.672 5.672 8 C 0.100 3.900 9 C -0.134 4.134 10 C -0.071 4.071 11 C -0.175 4.175 12 C 0.097 3.903 13 N -0.485 5.485 14 C 0.123 3.877 15 C 0.113 3.887 16 N -0.623 5.623 17 C 0.550 3.450 18 O -0.514 6.514 19 C -0.147 4.147 20 S -0.061 6.061 21 C -0.533 4.533 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.346 0.654 35 H 0.044 0.956 36 H 0.090 0.910 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.218 -6.969 -28.002 29.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.165 4.165 5 C -0.039 4.039 6 H 0.082 0.918 7 N -0.303 5.303 8 C -0.029 4.029 9 C -0.137 4.137 10 C -0.098 4.098 11 C -0.195 4.195 12 C -0.060 4.060 13 N -0.194 5.194 14 C -0.035 4.035 15 C -0.011 4.011 16 N -0.361 5.361 17 C 0.339 3.661 18 O -0.388 6.388 19 C -0.297 4.297 20 S 0.165 5.835 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.165 0.835 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.171 0.829 40 H 0.176 0.824 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.691 -6.613 -26.531 27.929 hybrid contribution 2.071 -0.493 -0.517 2.190 sum 7.762 -7.106 -27.048 29.023 Atomic orbital electron populations 1.22137 0.94615 1.02381 1.02938 1.21403 0.94895 0.96185 0.83963 0.90837 1.22884 0.97428 0.99226 0.97003 1.22685 0.97384 0.89852 0.93958 0.91840 1.60371 1.24475 1.32326 1.13172 1.20890 0.89224 0.92744 1.00056 1.20786 1.00788 0.96624 0.95457 1.21509 0.95746 0.99021 0.93482 1.22125 1.02332 0.93584 1.01441 1.22817 0.94171 0.97673 0.91370 1.67761 1.11878 1.32649 1.07067 1.22770 0.93944 0.87034 0.99739 1.22212 0.95796 0.89318 0.93820 1.48544 1.54025 1.28596 1.04889 1.19991 0.79728 0.85055 0.81355 1.90692 1.38720 1.26847 1.82521 1.23515 1.03570 1.02663 0.99961 1.85388 1.70044 1.37388 0.90645 1.22896 1.38392 1.13801 0.93069 0.90899 1.24995 0.95252 0.96010 0.97370 1.70030 1.38666 1.28056 1.13539 0.86117 0.79002 0.80281 0.80106 1.19585 1.20591 1.20562 0.90747 0.92101 0.92463 0.90305 0.89398 0.83525 0.93758 0.89213 0.85130 0.84850 0.82859 0.82446 0.90724 0.90323 0.89297 0.89461 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.11 37.16 0.34 -1.63 16 2 C 0.14 1.64 3.46 -66.95 -0.23 1.41 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.13 -1.00 5.95 -24.90 -0.15 -1.14 16 5 C 0.07 0.57 3.32 -65.56 -0.22 0.35 16 6 H 0.06 0.51 7.92 -51.93 -0.41 0.09 16 7 N -0.67 -4.52 6.36 -105.72 -0.67 -5.19 16 8 C 0.10 0.64 5.71 -4.97 -0.03 0.61 16 9 C -0.13 -0.95 5.41 -104.48 -0.57 -1.52 16 10 C -0.07 -0.42 9.86 -39.28 -0.39 -0.81 16 11 C -0.17 -1.02 10.11 -39.44 -0.40 -1.42 16 12 C 0.10 0.71 11.18 -17.54 -0.20 0.52 16 13 N -0.49 -4.76 10.36 -13.26 -0.14 -4.90 16 14 C 0.12 1.07 10.86 -17.55 -0.19 0.88 16 15 C 0.11 1.24 6.34 -2.53 -0.02 1.23 16 16 N -0.62 -8.95 3.06 -163.01 -0.50 -9.45 16 17 C 0.55 10.64 7.66 -10.98 -0.08 10.55 16 18 O -0.51 -11.81 14.91 5.56 0.08 -11.73 16 19 C -0.15 -3.03 5.16 36.01 0.19 -2.85 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 21 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 22 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 25 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.07 1.15 6.89 -51.93 -0.36 0.79 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.67 7.85 -51.93 -0.41 0.26 16 34 H 0.35 1.93 8.52 -39.29 -0.33 1.60 16 35 H 0.04 0.25 8.05 -51.93 -0.42 -0.17 16 36 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 37 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 39 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 44 H 0.09 1.68 7.85 -51.91 -0.41 1.27 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -35.26 388.33 -10.54 -45.80 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.92 Total: -0.65 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.74 Total: -6.79 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.58 Total: -45.08 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.26 -10.54 -45.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283943025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.586 kcal (2) G-P(sol) polarization free energy of solvation -35.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds