Wall clock time and date at job start Tue Mar 31 2020 19:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39906 * 109.47211 * 2 1 4 4 F 1.39902 * 109.47122 * 240.00607 * 2 1 3 5 5 C 1.50702 * 109.47637 * 120.00347 * 2 1 3 6 6 O 1.21277 * 119.99551 * 335.00020 * 5 2 1 7 7 N 1.34770 * 120.00183 * 155.00358 * 5 2 1 8 8 C 1.46496 * 119.99932 * 180.02562 * 7 5 2 9 9 C 1.53008 * 109.47237 * 179.97438 * 8 7 5 10 10 H 1.09003 * 109.50347 * 60.08774 * 9 8 7 11 11 C 1.53096 * 109.50434 * 180.21397 * 9 8 7 12 12 N 1.47023 * 109.25410 * 176.78556 * 11 9 8 13 13 C 1.46897 * 111.00004 * 177.60916 * 12 11 9 14 14 C 1.50694 * 109.47388 * 189.99702 * 13 12 11 15 15 O 1.21298 * 119.99819 * 6.28113 * 14 13 12 16 16 N 1.34773 * 120.00317 * 186.27689 * 14 13 12 17 17 C 1.37102 * 120.00176 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99706 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00037 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99886 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00116 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47258 * 90.00147 * 21 19 17 23 23 H 1.48501 * 109.47283 * 210.00199 * 21 19 17 24 24 H 1.48501 * 109.46970 * 330.00075 * 21 19 17 25 25 C 1.47010 * 110.75137 * 301.38630 * 12 11 9 26 26 C 1.53094 * 109.25913 * 58.61627 * 25 12 11 27 27 O 1.43010 * 109.50476 * 300.00128 * 9 8 7 28 28 H 1.08992 * 109.47523 * 59.99901 * 1 2 3 29 29 H 1.09006 * 109.46558 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46878 * 299.99402 * 1 2 3 31 31 H 0.97005 * 120.00220 * 359.97438 * 7 5 2 32 32 H 1.08998 * 109.47189 * 299.99770 * 8 7 5 33 33 H 1.08997 * 109.47419 * 59.99798 * 8 7 5 34 34 H 1.08995 * 109.51127 * 296.71743 * 11 9 8 35 35 H 1.09002 * 109.50645 * 56.85449 * 11 9 8 36 36 H 1.09000 * 109.47190 * 309.99876 * 13 12 11 37 37 H 1.09000 * 109.47302 * 69.99569 * 13 12 11 38 38 H 0.96998 * 120.00357 * 0.02562 * 16 14 13 39 39 H 0.97001 * 119.99998 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.50871 * 298.67975 * 25 12 11 41 41 H 1.09003 * 109.50687 * 178.55371 * 25 12 11 42 42 H 1.09005 * 109.50423 * 183.21605 * 26 25 12 43 43 H 1.09000 * 109.51081 * 63.08402 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0324 -0.7105 1.2304 6 8 1.3371 -0.7706 2.2222 7 7 3.2544 -1.2789 1.2285 8 6 3.7426 -1.9700 2.4244 9 6 5.1451 -2.5208 2.1584 10 1 5.8187 -1.6991 1.9152 11 6 5.6538 -3.2479 3.4060 12 7 6.9683 -3.8407 3.1194 13 6 7.5189 -4.5012 4.3105 14 6 8.9554 -4.8791 4.0565 15 8 9.5044 -4.5239 3.0348 16 7 9.6302 -5.6116 4.9644 17 6 10.9370 -5.9559 4.7331 18 1 11.4257 -5.6396 3.8234 19 6 11.6325 -6.7115 5.6689 20 7 12.8849 -7.0419 5.4469 21 14 10.7873 -7.2579 7.2427 22 1 10.1411 -8.5770 7.0252 23 1 11.7921 -7.3721 8.3302 24 1 9.7569 -6.2587 7.6237 25 6 6.8821 -4.7777 1.9899 26 6 6.3610 -4.0352 0.7566 27 8 5.0975 -3.4395 1.0635 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.8104 -1.2311 0.4351 32 1 3.7791 -1.2700 3.2591 33 1 3.0701 -2.7922 2.6689 34 1 5.7460 -2.5386 4.2285 35 1 4.9515 -4.0351 3.6803 36 1 7.4671 -3.8203 5.1601 37 1 6.9402 -5.3988 4.5284 38 1 9.1912 -5.8960 5.7813 39 1 13.3706 -7.5691 6.1004 40 1 6.1994 -5.5893 2.2415 41 1 7.8708 -5.1852 1.7787 42 1 6.2413 -4.7383 -0.0678 43 1 7.0705 -3.2580 0.4728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319287823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:33 Heat of formation + Delta-G solvation = -197.474982 kcal Electronic energy + Delta-G solvation = -29013.587005 eV Core-core repulsion = 24344.340583 eV Total energy + Delta-G solvation = -4669.246422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.65548 -47.65108 -40.38133 -39.67870 -38.30910 -35.80461 -35.19551 -33.93716 -32.23435 -31.74849 -31.71192 -29.29596 -27.59699 -25.58550 -24.50946 -23.80558 -22.49412 -21.28745 -20.47728 -19.44701 -19.04829 -18.32983 -18.24783 -17.32017 -16.76078 -16.37286 -16.25720 -15.85322 -15.64673 -15.24031 -15.13819 -15.01517 -14.57785 -14.44248 -14.03614 -13.96226 -13.90207 -13.79714 -13.63450 -13.23274 -13.13899 -13.00484 -12.89979 -12.58311 -12.46600 -12.32535 -12.04137 -11.87464 -11.40780 -11.38042 -11.08447 -10.71866 -10.63493 -10.46137 -10.03327 -9.82857 -9.67991 -9.59239 -8.66321 -8.24767 -8.14063 -6.36151 -3.87905 1.68113 2.12829 2.98422 3.02623 3.11426 3.22417 3.41756 3.49658 3.65516 3.68840 4.00138 4.05011 4.05539 4.52113 4.62410 4.66392 4.85468 4.91083 5.01300 5.04321 5.14284 5.15578 5.21620 5.31515 5.36010 5.39535 5.48890 5.57662 5.63248 5.68209 5.76321 5.84578 5.97210 6.11038 6.74655 6.91492 6.93149 7.09862 7.37134 7.52516 8.08443 8.54300 8.89555 9.36672 9.76548 10.76757 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.033887 B = 0.001964 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.076176 B =14250.388936 C =14664.602954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.282 3.718 3 F -0.182 7.182 4 F -0.187 7.187 5 C 0.485 3.515 6 O -0.506 6.506 7 N -0.700 5.700 8 C 0.127 3.873 9 C 0.082 3.918 10 H 0.078 0.922 11 C 0.027 3.973 12 N -0.512 5.512 13 C 0.044 3.956 14 C 0.451 3.549 15 O -0.560 6.560 16 N -0.589 5.589 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.880 5.880 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 C 0.015 3.985 26 C 0.069 3.931 27 O -0.385 6.385 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.414 0.586 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.370 0.630 39 H 0.274 0.726 40 H 0.035 0.965 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.480 10.916 -7.584 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.242 3.758 3 F -0.163 7.163 4 F -0.168 7.168 5 C 0.266 3.734 6 O -0.381 6.381 7 N -0.352 5.352 8 C 0.003 3.997 9 C 0.024 3.976 10 H 0.096 0.904 11 C -0.103 4.103 12 N -0.237 5.237 13 C -0.088 4.088 14 C 0.236 3.764 15 O -0.441 6.441 16 N -0.229 5.229 17 C -0.434 4.434 18 H 0.138 0.862 19 C -0.161 4.161 20 N -0.519 5.519 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.195 1.195 25 C -0.113 4.113 26 C -0.008 4.008 27 O -0.304 6.304 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.250 0.750 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.129 0.871 42 H 0.117 0.883 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.195 11.335 -7.736 27.816 hybrid contribution -0.281 -1.114 1.301 1.736 sum -24.476 10.220 -6.435 27.294 Atomic orbital electron populations 1.22641 0.88728 1.06424 1.06225 1.21351 0.95945 0.76196 0.82278 1.93101 1.90515 1.36095 1.96566 1.93085 1.90439 1.80609 1.52677 1.20716 0.82697 0.80727 0.89258 1.90790 1.55854 1.58380 1.33051 1.45851 1.16865 1.54464 1.17976 1.21530 0.94005 0.96870 0.87255 1.22316 0.95186 0.92517 0.87607 0.90368 1.22664 0.90667 0.99287 0.97632 1.61755 1.21690 1.34574 1.05642 1.21913 0.95479 0.98264 0.93100 1.19582 0.87506 0.83499 0.85778 1.90544 1.69492 1.56629 1.27475 1.42222 1.12949 1.48654 1.19064 1.19418 0.85411 1.30930 1.07654 0.86238 1.25045 0.95615 0.97273 0.98209 1.69619 1.08748 1.37456 1.36118 0.86674 0.79692 0.79460 0.83575 1.19641 1.20119 1.19498 1.22927 1.03450 0.93633 0.91242 1.22703 0.84424 0.97140 0.96529 1.87941 1.32228 1.59857 1.50360 0.89031 0.88730 0.88014 0.75024 0.89074 0.89935 0.89302 0.93710 0.88881 0.93231 0.79712 0.91560 0.94657 0.87112 0.88255 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 8.92 37.16 0.33 -0.72 16 2 C 0.28 2.28 2.47 -27.88 -0.07 2.21 16 3 F -0.18 -1.65 17.05 2.25 0.04 -1.61 16 4 F -0.19 -1.58 16.51 2.25 0.04 -1.54 16 5 C 0.49 4.71 7.23 -10.99 -0.08 4.63 16 6 O -0.51 -6.10 16.09 5.56 0.09 -6.01 16 7 N -0.70 -6.20 5.38 -60.30 -0.32 -6.52 16 8 C 0.13 1.12 5.37 -4.04 -0.02 1.09 16 9 C 0.08 0.83 2.89 -26.68 -0.08 0.75 16 10 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 11 C 0.03 0.29 4.93 -3.71 -0.02 0.28 16 12 N -0.51 -7.61 4.42 -235.76 -1.04 -8.65 16 13 C 0.04 0.69 5.45 -4.98 -0.03 0.67 16 14 C 0.45 9.80 7.35 -10.99 -0.08 9.72 16 15 O -0.56 -14.30 14.25 5.54 0.08 -14.22 16 16 N -0.59 -13.60 5.09 -10.97 -0.06 -13.65 16 17 C -0.31 -8.43 10.16 -14.93 -0.15 -8.58 16 18 H 0.12 3.77 7.39 -52.49 -0.39 3.39 16 19 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 20 N -0.88 -25.28 13.96 55.50 0.77 -24.51 16 21 Si 0.88 18.98 27.74 -169.99 -4.71 14.26 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 25 C 0.02 0.22 5.30 -3.72 -0.02 0.20 16 26 C 0.07 0.83 7.01 37.21 0.26 1.09 16 27 O -0.38 -4.42 10.22 -35.23 -0.36 -4.78 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.59 7.87 -51.93 -0.41 0.18 16 31 H 0.41 3.30 7.90 -40.82 -0.32 2.98 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 1.28 8.04 -51.93 -0.42 0.86 16 37 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 38 H 0.37 7.50 5.76 -40.82 -0.24 7.26 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.11 1.97 6.10 -51.93 -0.32 1.66 16 42 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 364.87 15.07 5.50 5.50 Total: -1.00 -33.14 364.87 -5.93 -39.07 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -5.90 Total: 10.28 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -0.05 Total: 12.37 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.65 Total: -53.33 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.19 Total: -25.00 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.08 Total: -3.15 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.14 -5.93 -39.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319287823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.401 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds