Wall clock time and date at job start Tue Mar 31 2020 19:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39906 * 109.47211 * 2 1 4 4 F 1.39902 * 109.47122 * 240.00607 * 2 1 3 5 5 C 1.50702 * 109.47637 * 120.00347 * 2 1 3 6 6 O 1.21277 * 119.99551 * 335.00020 * 5 2 1 7 7 N 1.34770 * 120.00183 * 155.00358 * 5 2 1 8 8 C 1.46496 * 119.99932 * 180.02562 * 7 5 2 9 9 C 1.53008 * 109.47237 * 179.97438 * 8 7 5 10 10 H 1.09003 * 109.50347 * 60.08774 * 9 8 7 11 11 C 1.53096 * 109.50434 * 180.21397 * 9 8 7 12 12 N 1.47023 * 109.25410 * 176.78556 * 11 9 8 13 13 C 1.46897 * 111.00004 * 177.60916 * 12 11 9 14 14 C 1.50694 * 109.47388 * 189.99702 * 13 12 11 15 15 O 1.21298 * 119.99819 * 6.28113 * 14 13 12 16 16 N 1.34773 * 120.00317 * 186.27689 * 14 13 12 17 17 C 1.37102 * 120.00176 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99706 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00037 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99886 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00116 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47258 * 90.00147 * 21 19 17 23 23 H 1.48501 * 109.47283 * 210.00199 * 21 19 17 24 24 H 1.48501 * 109.46970 * 330.00075 * 21 19 17 25 25 C 1.47010 * 110.75137 * 301.38630 * 12 11 9 26 26 C 1.53094 * 109.25913 * 58.61627 * 25 12 11 27 27 O 1.43010 * 109.50476 * 300.00128 * 9 8 7 28 28 H 1.08992 * 109.47523 * 59.99901 * 1 2 3 29 29 H 1.09006 * 109.46558 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46878 * 299.99402 * 1 2 3 31 31 H 0.97005 * 120.00220 * 359.97438 * 7 5 2 32 32 H 1.08998 * 109.47189 * 299.99770 * 8 7 5 33 33 H 1.08997 * 109.47419 * 59.99798 * 8 7 5 34 34 H 1.08995 * 109.51127 * 296.71743 * 11 9 8 35 35 H 1.09002 * 109.50645 * 56.85449 * 11 9 8 36 36 H 1.09000 * 109.47190 * 309.99876 * 13 12 11 37 37 H 1.09000 * 109.47302 * 69.99569 * 13 12 11 38 38 H 0.96998 * 120.00357 * 0.02562 * 16 14 13 39 39 H 0.97001 * 119.99998 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.50871 * 298.67975 * 25 12 11 41 41 H 1.09003 * 109.50687 * 178.55371 * 25 12 11 42 42 H 1.09005 * 109.50423 * 183.21605 * 26 25 12 43 43 H 1.09000 * 109.51081 * 63.08402 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0324 -0.7105 1.2304 6 8 1.3371 -0.7706 2.2222 7 7 3.2544 -1.2789 1.2285 8 6 3.7426 -1.9700 2.4244 9 6 5.1451 -2.5208 2.1584 10 1 5.8187 -1.6991 1.9152 11 6 5.6538 -3.2479 3.4060 12 7 6.9683 -3.8407 3.1194 13 6 7.5189 -4.5012 4.3105 14 6 8.9554 -4.8791 4.0565 15 8 9.5044 -4.5239 3.0348 16 7 9.6302 -5.6116 4.9644 17 6 10.9370 -5.9559 4.7331 18 1 11.4257 -5.6396 3.8234 19 6 11.6325 -6.7115 5.6689 20 7 12.8849 -7.0419 5.4469 21 14 10.7873 -7.2579 7.2427 22 1 10.1411 -8.5770 7.0252 23 1 11.7921 -7.3721 8.3302 24 1 9.7569 -6.2587 7.6237 25 6 6.8821 -4.7777 1.9899 26 6 6.3610 -4.0352 0.7566 27 8 5.0975 -3.4395 1.0635 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.8104 -1.2311 0.4351 32 1 3.7791 -1.2700 3.2591 33 1 3.0701 -2.7922 2.6689 34 1 5.7460 -2.5386 4.2285 35 1 4.9515 -4.0351 3.6803 36 1 7.4671 -3.8203 5.1601 37 1 6.9402 -5.3988 4.5284 38 1 9.1912 -5.8960 5.7813 39 1 13.3706 -7.5691 6.1004 40 1 6.1994 -5.5893 2.2415 41 1 7.8708 -5.1852 1.7787 42 1 6.2413 -4.7383 -0.0678 43 1 7.0705 -3.2580 0.4728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319287823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:33 Heat of formation + Delta-G solvation = -225.256805 kcal Electronic energy + Delta-G solvation = -29014.791715 eV Core-core repulsion = 24344.340583 eV Total energy + Delta-G solvation = -4670.451132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.30873 -48.30956 -41.27102 -40.71326 -39.84956 -36.88861 -36.13617 -35.80567 -33.75506 -32.97057 -32.40936 -30.51815 -28.59683 -26.95920 -25.47236 -25.05323 -23.44178 -22.04358 -21.41535 -21.24982 -20.24239 -19.72192 -18.90870 -18.12401 -17.74889 -17.52037 -17.24931 -16.89498 -16.76848 -16.54532 -16.34686 -15.91261 -15.71710 -15.34499 -15.20365 -15.09102 -14.98925 -14.75520 -14.62331 -14.46926 -14.27196 -13.93227 -13.82168 -13.51981 -13.39674 -13.29078 -13.08291 -13.04067 -12.88807 -12.43088 -12.35762 -12.28468 -11.98867 -11.66403 -11.46494 -11.23229 -10.83254 -10.41378 -10.34050 -10.23286 -9.33815 -8.41494 -6.02224 0.94286 1.29817 1.34881 1.43701 1.44794 1.94810 2.22428 2.43177 2.59079 2.66041 2.90333 3.13779 3.14699 3.38518 3.45979 3.69458 3.83740 3.93634 4.05886 4.13650 4.21225 4.35429 4.40932 4.46177 4.51503 4.54644 4.58393 4.59467 4.62880 4.83131 4.88172 4.95067 4.99415 5.06445 5.51742 5.79016 5.92774 5.98930 6.03320 6.11294 6.59217 6.65724 6.88208 7.39621 7.96412 8.75968 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.033887 B = 0.001964 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.076176 B =14250.388936 C =14664.602954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.283 3.717 3 F -0.188 7.188 4 F -0.189 7.189 5 C 0.484 3.516 6 O -0.531 6.531 7 N -0.697 5.697 8 C 0.133 3.867 9 C 0.085 3.915 10 H 0.077 0.923 11 C 0.028 3.972 12 N -0.534 5.534 13 C 0.055 3.945 14 C 0.451 3.549 15 O -0.605 6.605 16 N -0.592 5.592 17 C -0.326 4.326 18 H 0.056 0.944 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.258 1.258 23 H -0.276 1.276 24 H -0.230 1.230 25 C 0.017 3.983 26 C 0.076 3.924 27 O -0.386 6.386 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.417 0.583 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.057 0.943 36 H 0.125 0.875 37 H 0.078 0.922 38 H 0.389 0.611 39 H 0.279 0.721 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.116 0.884 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.918 11.252 -5.799 30.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.243 3.757 3 F -0.169 7.169 4 F -0.170 7.170 5 C 0.265 3.735 6 O -0.408 6.408 7 N -0.349 5.349 8 C 0.009 3.991 9 C 0.026 3.974 10 H 0.095 0.905 11 C -0.100 4.100 12 N -0.259 5.259 13 C -0.076 4.076 14 C 0.239 3.761 15 O -0.489 6.489 16 N -0.234 5.234 17 C -0.455 4.455 18 H 0.074 0.926 19 C -0.215 4.215 20 N -0.575 5.575 21 Si 0.784 3.216 22 H -0.183 1.183 23 H -0.202 1.202 24 H -0.153 1.153 25 C -0.111 4.111 26 C -0.001 4.001 27 O -0.305 6.305 28 H 0.128 0.872 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.254 0.746 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.075 0.925 36 H 0.143 0.857 37 H 0.096 0.904 38 H 0.224 0.776 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.134 0.866 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.660 11.691 -5.970 30.617 hybrid contribution 0.838 -1.152 0.591 1.542 sum -26.822 10.540 -5.379 29.316 Atomic orbital electron populations 1.22698 0.86812 1.07172 1.07135 1.21457 0.97158 0.75588 0.81476 1.93090 1.90743 1.36540 1.96551 1.93082 1.90621 1.80646 1.52685 1.20972 0.82548 0.80499 0.89437 1.90776 1.56523 1.59469 1.34027 1.45891 1.16744 1.54014 1.18212 1.21498 0.92949 0.97089 0.87546 1.22364 0.95964 0.92101 0.86942 0.90545 1.22770 0.88741 0.99874 0.98630 1.61688 1.24296 1.34634 1.05304 1.21845 0.90871 1.00387 0.94489 1.20840 0.89759 0.81261 0.84280 1.90532 1.71287 1.57701 1.29333 1.42049 1.11430 1.49551 1.20370 1.18981 0.87731 1.32476 1.06303 0.92585 1.26109 0.96166 0.96528 1.02660 1.69804 1.11058 1.38546 1.38093 0.85380 0.79191 0.80104 0.76944 1.18279 1.20151 1.15349 1.22810 1.01400 0.94342 0.92527 1.22611 0.84500 0.97010 0.95930 1.87948 1.31537 1.60034 1.50955 0.87199 0.88081 0.88050 0.74565 0.87802 0.90020 0.87148 0.92456 0.85711 0.90388 0.77559 0.91192 0.93747 0.91193 0.86605 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 8.92 71.98 0.64 -1.12 16 2 C 0.28 4.14 2.47 29.85 0.07 4.22 16 3 F -0.19 -3.16 17.05 44.97 0.77 -2.40 16 4 F -0.19 -2.91 16.51 44.97 0.74 -2.16 16 5 C 0.48 8.61 7.23 87.66 0.63 9.24 16 6 O -0.53 -11.96 16.09 -3.02 -0.05 -12.01 16 7 N -0.70 -11.04 5.38 -463.07 -2.49 -13.53 16 8 C 0.13 1.99 5.37 86.38 0.46 2.45 16 9 C 0.08 1.50 2.89 30.63 0.09 1.59 16 10 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 11 C 0.03 0.52 4.93 86.31 0.43 0.95 16 12 N -0.53 -14.81 4.42 -899.80 -3.98 -18.78 16 13 C 0.05 1.58 5.45 85.56 0.47 2.05 16 14 C 0.45 19.57 7.35 87.66 0.64 20.22 16 15 O -0.60 -32.23 14.25 -3.09 -0.04 -32.27 16 16 N -0.59 -27.12 5.09 -306.99 -1.56 -28.68 16 17 C -0.33 -18.73 10.16 84.04 0.85 -17.87 16 18 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 19 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 20 N -0.93 -55.81 13.96 21.66 0.30 -55.51 16 21 Si 0.96 38.10 27.74 68.60 1.90 40.00 16 22 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 24 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 25 C 0.02 0.50 5.30 86.31 0.46 0.95 16 26 C 0.08 1.78 7.01 72.01 0.50 2.28 16 27 O -0.39 -8.09 10.22 -148.98 -1.52 -9.62 16 28 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.10 1.02 7.87 -2.39 -0.02 1.00 16 31 H 0.42 5.98 7.90 -92.70 -0.73 5.25 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.11 1.62 8.09 -2.39 -0.02 1.60 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.13 2.87 8.04 -2.39 -0.02 2.85 16 37 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16 38 H 0.39 14.68 5.76 -92.71 -0.53 14.15 16 39 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 2.59 6.10 -2.39 -0.01 2.57 16 42 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 43 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -77.37 364.87 -0.47 -77.84 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.26 Total: 32.57 kcal Atomic # 6 Polarization: 18.83 SS G_CDS: 5.72 Total: 24.55 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -7.73 Total: -116.51 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -1.61 Total: -53.90 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 1.51 Total: -4.56 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.00 kcal Total: -77.37 -0.47 -77.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319287823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.412 kcal (2) G-P(sol) polarization free energy of solvation -77.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds