Wall clock time and date at job start Tue Mar 31 2020 18:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47428 * 2 1 4 4 N 1.46497 * 109.47273 * 120.00150 * 2 1 3 5 5 C 1.34779 * 120.00195 * 155.00047 * 4 2 1 6 6 S 1.71205 * 119.99787 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00351 * 180.02562 * 5 4 2 8 8 N 1.40105 * 120.00116 * 359.97438 * 7 5 4 9 9 C 1.34769 * 120.00116 * 180.02562 * 8 7 5 10 10 O 1.21284 * 120.00091 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.00156 * 180.02562 * 9 8 7 12 12 C 1.52995 * 109.47348 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47385 * 53.81101 * 12 11 9 14 14 C 1.50707 * 109.46800 * 293.80633 * 12 11 9 15 15 H 1.07996 * 119.99939 * 324.79144 * 14 12 11 16 16 C 1.37876 * 119.99516 * 144.79724 * 14 12 11 17 17 N 1.31517 * 119.99498 * 181.40280 * 16 14 12 18 18 Si 1.86799 * 120.00347 * 1.40222 * 16 14 12 19 19 H 1.48496 * 109.47059 * 267.09616 * 18 16 14 20 20 H 1.48498 * 109.46945 * 27.10055 * 18 16 14 21 21 H 1.48502 * 109.46861 * 147.09689 * 18 16 14 22 22 C 1.50699 * 109.46966 * 173.80920 * 12 11 9 23 23 C 1.38237 * 120.00135 * 66.64777 * 22 12 11 24 24 C 1.38237 * 120.00124 * 179.80917 * 23 22 12 25 25 C 1.38241 * 119.99834 * 0.39586 * 24 23 22 26 26 C 1.38239 * 119.99727 * 359.85702 * 25 24 23 27 27 C 1.38229 * 120.00171 * 359.95425 * 26 25 24 28 28 H 1.09005 * 109.46990 * 299.99858 * 1 2 3 29 29 H 1.08999 * 109.47618 * 59.99770 * 1 2 3 30 30 H 1.09005 * 109.47384 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46990 * 240.00142 * 2 1 3 32 32 H 1.09000 * 109.46490 * 59.99912 * 3 2 1 33 33 H 1.08992 * 109.47333 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46909 * 300.00665 * 3 2 1 35 35 H 0.96996 * 120.00286 * 334.99751 * 4 2 1 36 36 H 0.97003 * 120.00064 * 180.02562 * 7 5 4 37 37 H 0.97005 * 119.99236 * 0.02562 * 8 7 5 38 38 H 1.09004 * 109.46561 * 60.00018 * 11 9 8 39 39 H 1.09003 * 109.46933 * 300.01124 * 11 9 8 40 40 H 0.96996 * 119.99967 * 179.97438 * 17 16 14 41 41 H 1.07999 * 120.00352 * 359.97438 * 23 22 12 42 42 H 1.07995 * 120.00255 * 180.23001 * 24 23 22 43 43 H 1.07995 * 119.99860 * 179.82910 * 25 24 23 44 44 H 1.08003 * 119.99758 * 179.97438 * 26 25 24 45 45 H 1.08004 * 119.99873 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 16 4.2216 -1.1748 -0.2061 7 7 3.6894 -1.8950 2.2945 8 7 2.8862 -1.9645 3.4404 9 6 3.3355 -2.5998 4.5407 10 8 4.4353 -3.1110 4.5392 11 6 2.4713 -2.6751 5.7730 12 6 3.2119 -3.4436 6.8692 13 1 4.1906 -2.9922 7.0316 14 6 3.3851 -4.8798 6.4464 15 1 2.6146 -5.3693 5.8692 16 6 4.5270 -5.5685 6.7965 17 7 4.6905 -6.8131 6.4041 18 14 5.8418 -4.7341 7.8282 19 1 6.8578 -4.1223 6.9346 20 1 5.2180 -3.6777 8.6649 21 1 6.4947 -5.7390 8.7051 22 6 2.4151 -3.3888 8.1471 23 6 1.1903 -4.0249 8.2258 24 6 0.4612 -3.9779 9.3993 25 6 0.9531 -3.2879 10.4916 26 6 2.1756 -2.6474 10.4111 27 6 2.9064 -2.6977 9.2389 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.4623 -0.7387 1.9894 36 1 4.5690 -2.3038 2.2933 37 1 2.0067 -1.5553 3.4416 38 1 1.5408 -3.1897 5.5333 39 1 2.2491 -1.6670 6.1231 40 1 5.4939 -7.2976 6.6501 41 1 0.8042 -4.5608 7.3714 42 1 -0.4940 -4.4779 9.4620 43 1 0.3823 -3.2488 11.4074 44 1 2.5597 -2.1080 11.2643 45 1 3.8617 -2.1976 9.1762 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321496256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:02 Heat of formation + Delta-G solvation = 36.597691 kcal Electronic energy + Delta-G solvation = -26226.175995 eV Core-core repulsion = 22564.062126 eV Total energy + Delta-G solvation = -3662.113868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.38815 -39.04867 -38.43607 -36.41236 -34.32102 -32.95692 -31.85536 -30.98318 -30.33643 -29.03579 -27.62859 -26.23056 -23.76954 -22.86560 -22.42700 -21.98575 -20.99273 -19.78572 -19.05453 -18.09689 -17.12763 -16.65855 -16.18781 -15.86468 -15.66057 -15.37892 -14.85592 -14.71710 -14.39341 -14.10440 -14.06754 -13.57692 -13.26488 -12.88692 -12.74449 -12.71215 -12.59713 -12.52247 -12.21116 -12.06275 -11.79634 -11.45656 -11.32186 -11.26029 -10.88097 -10.67941 -10.64782 -10.53617 -10.11699 -9.77580 -9.69421 -9.27957 -8.83558 -8.58603 -8.33294 -7.98049 -7.75814 -7.63192 -6.12355 -4.12809 1.21861 1.30839 1.96320 1.99785 2.14756 2.53058 2.88996 3.33199 3.36940 3.41123 4.20173 4.37969 4.43714 4.45368 4.64614 4.83774 4.87142 5.20518 5.24784 5.27916 5.38737 5.42463 5.42796 5.51538 5.54768 5.61975 5.63088 5.68756 5.88413 5.92997 6.01890 6.07551 6.14672 6.17221 6.31860 6.51723 6.61530 6.70097 6.80350 7.01872 7.10665 7.11983 7.27009 7.39382 7.56290 7.66593 8.34563 8.37668 8.84603 9.50889 11.00034 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.003094 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.364479 B = 9047.230574 C =10450.947065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 C -0.165 4.165 4 N -0.685 5.685 5 C 0.566 3.434 6 S -0.626 6.626 7 N -0.461 5.461 8 N -0.566 5.566 9 C 0.519 3.481 10 O -0.477 6.477 11 C -0.105 4.105 12 C 0.058 3.942 13 H 0.053 0.947 14 C -0.500 4.500 15 H 0.072 0.928 16 C 0.089 3.911 17 N -0.893 5.893 18 Si 0.868 3.132 19 H -0.275 1.275 20 H -0.255 1.255 21 H -0.292 1.292 22 C -0.043 4.043 23 C -0.100 4.100 24 C -0.128 4.128 25 C -0.147 4.147 26 C -0.127 4.127 27 C -0.134 4.134 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.392 0.608 36 H 0.459 0.541 37 H 0.413 0.587 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.264 0.736 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.565 15.434 -3.540 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.033 3.967 3 C -0.223 4.223 4 N -0.318 5.318 5 C 0.203 3.797 6 S -0.502 6.502 7 N -0.187 5.187 8 N -0.320 5.320 9 C 0.306 3.694 10 O -0.344 6.344 11 C -0.147 4.147 12 C 0.038 3.962 13 H 0.071 0.929 14 C -0.537 4.537 15 H 0.090 0.910 16 C -0.115 4.115 17 N -0.529 5.529 18 Si 0.696 3.304 19 H -0.201 1.201 20 H -0.179 1.179 21 H -0.219 1.219 22 C -0.043 4.043 23 C -0.118 4.118 24 C -0.146 4.146 25 C -0.165 4.165 26 C -0.145 4.145 27 C -0.152 4.152 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.229 0.771 36 H 0.309 0.691 37 H 0.253 0.747 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.115 14.942 -4.332 19.120 hybrid contribution -0.078 0.067 1.776 1.779 sum -11.194 15.008 -2.555 18.897 Atomic orbital electron populations 1.22132 0.93639 1.03007 1.03351 1.21448 0.93812 0.93696 0.87736 1.22188 1.03612 0.94498 1.02020 1.45101 1.14259 1.54579 1.17895 1.22392 0.87139 0.81115 0.89036 1.93600 1.56533 1.80627 1.19414 1.44813 1.17993 1.52991 1.02950 1.46126 1.17736 1.62044 1.06087 1.21501 0.88910 0.76535 0.82471 1.90833 1.20583 1.41449 1.81541 1.21731 0.99281 1.01623 0.92050 1.18132 0.93656 0.97615 0.86754 0.92935 1.20580 1.05012 0.93295 1.34801 0.90969 1.24892 0.97510 0.94413 0.94685 1.69872 1.27747 1.10155 1.45170 0.86981 0.82721 0.79949 0.80750 1.20109 1.17912 1.21883 1.20663 0.93679 0.92750 0.97250 1.20977 0.94710 0.98475 0.97652 1.21071 0.99810 0.99891 0.93815 1.20894 0.96798 1.00477 0.98314 1.20981 0.95380 1.00617 0.97520 1.21151 0.99663 1.00643 0.93719 0.92093 0.90072 0.91705 0.86538 0.92891 0.90614 0.91046 0.77133 0.69088 0.74697 0.88800 0.90353 0.92607 0.86147 0.87108 0.87346 0.87302 0.86982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 9.38 37.15 0.35 -0.45 16 2 C 0.14 1.04 2.95 -67.93 -0.20 0.84 16 3 C -0.16 -1.22 9.43 37.16 0.35 -0.87 16 4 N -0.68 -5.81 5.04 -55.52 -0.28 -6.09 16 5 C 0.57 7.01 7.94 -86.92 -0.69 6.32 16 6 S -0.63 -10.09 28.14 -107.50 -3.02 -13.12 16 7 N -0.46 -6.09 6.26 29.96 0.19 -5.90 16 8 N -0.57 -6.69 6.26 31.22 0.20 -6.49 16 9 C 0.52 8.47 7.70 -10.99 -0.08 8.38 16 10 O -0.48 -10.35 14.86 5.55 0.08 -10.27 16 11 C -0.10 -1.59 4.96 -27.88 -0.14 -1.73 16 12 C 0.06 1.18 1.17 -92.92 -0.11 1.07 16 13 H 0.05 1.15 4.94 -51.93 -0.26 0.89 16 14 C -0.50 -12.66 6.88 -34.44 -0.24 -12.89 16 15 H 0.07 1.98 8.06 -52.49 -0.42 1.56 16 16 C 0.09 2.46 5.47 -17.82 -0.10 2.37 16 17 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 18 Si 0.87 21.44 27.00 -169.99 -4.59 16.85 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.25 -5.72 4.72 56.52 0.27 -5.46 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 22 C -0.04 -0.80 4.65 -104.62 -0.49 -1.29 16 23 C -0.10 -1.75 8.93 -39.58 -0.35 -2.10 16 24 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 25 C -0.15 -2.17 10.05 -39.58 -0.40 -2.57 16 26 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 27 C -0.13 -2.37 8.70 -39.59 -0.34 -2.71 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.12 1.13 6.82 -51.93 -0.35 0.78 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.76 7.48 -51.93 -0.39 0.37 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.39 2.33 6.52 -40.82 -0.27 2.07 16 36 H 0.46 6.99 7.98 -182.59 -1.46 5.53 16 37 H 0.41 3.14 6.70 -182.59 -1.22 1.92 16 38 H 0.09 1.27 8.05 -51.93 -0.42 0.86 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.12 2.07 7.87 -52.49 -0.41 1.65 16 42 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 45 H 0.11 1.95 7.12 -52.48 -0.37 1.57 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -34.51 381.63 -12.79 -47.30 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -8.65 Total: 8.40 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -3.23 Total: -10.37 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.88 Total: -44.54 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.59 Total: 16.85 kcal Atomic # 16 Polarization: -10.09 SS G_CDS: -3.02 Total: -13.12 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.51 -12.79 -47.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321496256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.895 kcal (2) G-P(sol) polarization free energy of solvation -34.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds