Wall clock time and date at job start Tue Mar 31 2020 18:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47428 * 2 1 4 4 N 1.46497 * 109.47273 * 120.00150 * 2 1 3 5 5 C 1.34779 * 120.00195 * 155.00047 * 4 2 1 6 6 S 1.71205 * 119.99787 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00351 * 180.02562 * 5 4 2 8 8 N 1.40105 * 120.00116 * 359.97438 * 7 5 4 9 9 C 1.34769 * 120.00116 * 180.02562 * 8 7 5 10 10 O 1.21284 * 120.00091 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.00156 * 180.02562 * 9 8 7 12 12 C 1.52995 * 109.47348 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47385 * 53.81101 * 12 11 9 14 14 C 1.50707 * 109.46800 * 293.80633 * 12 11 9 15 15 H 1.07996 * 119.99939 * 324.79144 * 14 12 11 16 16 C 1.37876 * 119.99516 * 144.79724 * 14 12 11 17 17 N 1.31517 * 119.99498 * 181.40280 * 16 14 12 18 18 Si 1.86799 * 120.00347 * 1.40222 * 16 14 12 19 19 H 1.48496 * 109.47059 * 267.09616 * 18 16 14 20 20 H 1.48498 * 109.46945 * 27.10055 * 18 16 14 21 21 H 1.48502 * 109.46861 * 147.09689 * 18 16 14 22 22 C 1.50699 * 109.46966 * 173.80920 * 12 11 9 23 23 C 1.38237 * 120.00135 * 66.64777 * 22 12 11 24 24 C 1.38237 * 120.00124 * 179.80917 * 23 22 12 25 25 C 1.38241 * 119.99834 * 0.39586 * 24 23 22 26 26 C 1.38239 * 119.99727 * 359.85702 * 25 24 23 27 27 C 1.38229 * 120.00171 * 359.95425 * 26 25 24 28 28 H 1.09005 * 109.46990 * 299.99858 * 1 2 3 29 29 H 1.08999 * 109.47618 * 59.99770 * 1 2 3 30 30 H 1.09005 * 109.47384 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46990 * 240.00142 * 2 1 3 32 32 H 1.09000 * 109.46490 * 59.99912 * 3 2 1 33 33 H 1.08992 * 109.47333 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46909 * 300.00665 * 3 2 1 35 35 H 0.96996 * 120.00286 * 334.99751 * 4 2 1 36 36 H 0.97003 * 120.00064 * 180.02562 * 7 5 4 37 37 H 0.97005 * 119.99236 * 0.02562 * 8 7 5 38 38 H 1.09004 * 109.46561 * 60.00018 * 11 9 8 39 39 H 1.09003 * 109.46933 * 300.01124 * 11 9 8 40 40 H 0.96996 * 119.99967 * 179.97438 * 17 16 14 41 41 H 1.07999 * 120.00352 * 359.97438 * 23 22 12 42 42 H 1.07995 * 120.00255 * 180.23001 * 24 23 22 43 43 H 1.07995 * 119.99860 * 179.82910 * 25 24 23 44 44 H 1.08003 * 119.99758 * 179.97438 * 26 25 24 45 45 H 1.08004 * 119.99873 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 16 4.2216 -1.1748 -0.2061 7 7 3.6894 -1.8950 2.2945 8 7 2.8862 -1.9645 3.4404 9 6 3.3355 -2.5998 4.5407 10 8 4.4353 -3.1110 4.5392 11 6 2.4713 -2.6751 5.7730 12 6 3.2119 -3.4436 6.8692 13 1 4.1906 -2.9922 7.0316 14 6 3.3851 -4.8798 6.4464 15 1 2.6146 -5.3693 5.8692 16 6 4.5270 -5.5685 6.7965 17 7 4.6905 -6.8131 6.4041 18 14 5.8418 -4.7341 7.8282 19 1 6.8578 -4.1223 6.9346 20 1 5.2180 -3.6777 8.6649 21 1 6.4947 -5.7390 8.7051 22 6 2.4151 -3.3888 8.1471 23 6 1.1903 -4.0249 8.2258 24 6 0.4612 -3.9779 9.3993 25 6 0.9531 -3.2879 10.4916 26 6 2.1756 -2.6474 10.4111 27 6 2.9064 -2.6977 9.2389 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.4623 -0.7387 1.9894 36 1 4.5690 -2.3038 2.2933 37 1 2.0067 -1.5553 3.4416 38 1 1.5408 -3.1897 5.5333 39 1 2.2491 -1.6670 6.1231 40 1 5.4939 -7.2976 6.6501 41 1 0.8042 -4.5608 7.3714 42 1 -0.4940 -4.4779 9.4620 43 1 0.3823 -3.2488 11.4074 44 1 2.5597 -2.1080 11.2643 45 1 3.8617 -2.1976 9.1762 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321496256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:01 Heat of formation + Delta-G solvation = 14.050266 kcal Electronic energy + Delta-G solvation = -26227.153724 eV Core-core repulsion = 22564.062126 eV Total energy + Delta-G solvation = -3663.091598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.57873 -40.25210 -39.61451 -37.42344 -35.88881 -34.10169 -33.63556 -31.95164 -31.57469 -30.27946 -28.16421 -27.88861 -25.04601 -24.10470 -23.45253 -23.20883 -22.05524 -21.10280 -20.18745 -19.25879 -19.02675 -17.83634 -17.31019 -17.01088 -16.76967 -16.50575 -16.29774 -15.87528 -15.61118 -15.44464 -15.08577 -14.94090 -14.64944 -14.20266 -14.00185 -13.92176 -13.60942 -13.37132 -13.15766 -13.07481 -12.97247 -12.69280 -12.56928 -12.46634 -12.09292 -12.00887 -11.90517 -11.82247 -11.58375 -11.52861 -11.17716 -10.99654 -10.64162 -9.85050 -9.59143 -9.30458 -9.01003 -8.90753 -8.23691 -6.22024 0.14008 0.16361 0.70507 0.74588 1.06596 1.33065 1.37326 1.41488 1.59217 1.61245 2.39984 3.07866 3.10524 3.25985 3.78375 3.86735 4.09271 4.10634 4.25403 4.32290 4.33276 4.42766 4.48930 4.58787 4.62959 4.75526 4.78916 4.86494 4.87324 4.92112 4.94344 5.07626 5.17675 5.21653 5.36999 5.37492 5.41034 5.42515 5.65385 5.71596 5.79786 5.84187 6.02436 6.04792 6.23794 6.32797 6.37477 6.80034 7.14554 7.43926 8.92730 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.003094 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.364479 B = 9047.230574 C =10450.947065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 C -0.160 4.160 4 N -0.658 5.658 5 C 0.586 3.414 6 S -0.699 6.699 7 N -0.469 5.469 8 N -0.538 5.538 9 C 0.521 3.479 10 O -0.540 6.540 11 C -0.100 4.100 12 C 0.056 3.944 13 H 0.036 0.964 14 C -0.470 4.470 15 H 0.041 0.959 16 C 0.025 3.975 17 N -0.952 5.952 18 Si 0.914 3.086 19 H -0.292 1.292 20 H -0.219 1.219 21 H -0.302 1.302 22 C -0.062 4.062 23 C -0.115 4.115 24 C -0.127 4.127 25 C -0.140 4.140 26 C -0.127 4.127 27 C -0.149 4.149 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.410 0.590 36 H 0.450 0.550 37 H 0.436 0.564 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.257 0.743 41 H 0.114 0.886 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.137 0.863 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.166 18.365 -1.304 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.029 3.971 3 C -0.218 4.218 4 N -0.291 5.291 5 C 0.220 3.780 6 S -0.576 6.576 7 N -0.194 5.194 8 N -0.294 5.294 9 C 0.309 3.691 10 O -0.411 6.411 11 C -0.141 4.141 12 C 0.036 3.964 13 H 0.054 0.946 14 C -0.508 4.508 15 H 0.059 0.941 16 C -0.171 4.171 17 N -0.593 5.593 18 Si 0.741 3.259 19 H -0.219 1.219 20 H -0.142 1.142 21 H -0.229 1.229 22 C -0.063 4.063 23 C -0.133 4.133 24 C -0.145 4.145 25 C -0.158 4.158 26 C -0.145 4.145 27 C -0.168 4.168 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.250 0.750 36 H 0.298 0.702 37 H 0.281 0.719 38 H 0.132 0.868 39 H 0.144 0.856 40 H 0.066 0.934 41 H 0.132 0.868 42 H 0.155 0.845 43 H 0.160 0.840 44 H 0.155 0.845 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.844 17.969 -2.093 23.401 hybrid contribution 0.809 -0.733 1.090 1.542 sum -14.035 17.236 -1.003 22.250 Atomic orbital electron populations 1.22104 0.90689 1.03510 1.05006 1.21619 0.95906 0.93366 0.86191 1.22138 1.01606 0.94445 1.03621 1.45185 1.12559 1.52349 1.19014 1.21865 0.87754 0.80968 0.87423 1.93758 1.58991 1.82873 1.21949 1.44733 1.17972 1.53293 1.03409 1.45655 1.18168 1.60820 1.04724 1.21742 0.88128 0.75760 0.83518 1.90832 1.23205 1.44403 1.82706 1.21664 0.98698 1.03801 0.89939 1.18037 0.94281 0.94586 0.89467 0.94565 1.20871 1.02758 0.95454 1.31701 0.94101 1.25606 1.00004 0.94844 0.96669 1.70022 1.28501 1.12109 1.48703 0.86258 0.80376 0.79654 0.79637 1.21878 1.14166 1.22913 1.20394 0.94506 0.94920 0.96482 1.21036 0.94800 0.98775 0.98685 1.21399 1.00558 0.99446 0.93075 1.21333 0.96504 0.98731 0.99209 1.21324 0.95387 1.00287 0.97468 1.21263 1.00063 1.01168 0.94267 0.90156 0.88723 0.91773 0.88865 0.91281 0.93657 0.89485 0.75022 0.70205 0.71861 0.86783 0.85644 0.93400 0.86785 0.84484 0.83955 0.84529 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.38 71.98 0.68 -0.31 16 2 C 0.13 1.76 2.95 44.99 0.13 1.89 16 3 C -0.16 -2.07 9.43 71.98 0.68 -1.39 16 4 N -0.66 -9.78 5.04 -329.57 -1.66 -11.44 16 5 C 0.59 14.21 7.94 179.06 1.42 15.64 16 6 S -0.70 -23.42 28.14 -56.49 -1.59 -25.01 16 7 N -0.47 -12.21 6.26 -59.12 -0.37 -12.58 16 8 N -0.54 -11.70 6.26 -173.54 -1.09 -12.79 16 9 C 0.52 16.45 7.70 87.66 0.68 17.12 16 10 O -0.54 -23.93 14.86 -3.04 -0.05 -23.97 16 11 C -0.10 -2.78 4.96 29.85 0.15 -2.63 16 12 C 0.06 2.21 1.17 -12.29 -0.01 2.19 16 13 H 0.04 1.55 4.94 -2.39 -0.01 1.54 16 14 C -0.47 -24.31 6.88 25.60 0.18 -24.13 16 15 H 0.04 2.32 8.06 -2.91 -0.02 2.29 16 16 C 0.03 1.47 5.47 84.65 0.46 1.93 16 17 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 18 Si 0.91 45.47 27.00 68.60 1.85 47.33 16 19 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 20 H -0.22 -9.47 4.72 99.48 0.47 -9.00 16 21 H -0.30 -15.28 7.11 99.48 0.71 -14.58 16 22 C -0.06 -2.21 4.65 -19.87 -0.09 -2.30 16 23 C -0.11 -3.74 8.93 22.27 0.20 -3.54 16 24 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 25 C -0.14 -3.45 10.05 22.27 0.22 -3.22 16 26 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 27 C -0.15 -4.85 8.70 22.27 0.19 -4.65 16 28 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.09 1.78 6.82 -2.38 -0.02 1.76 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.04 0.89 7.48 -2.39 -0.02 0.88 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.41 3.37 6.52 -92.71 -0.60 2.77 16 36 H 0.45 14.18 7.98 -213.31 -1.70 12.48 16 37 H 0.44 5.06 6.70 -213.31 -1.43 3.63 16 38 H 0.11 2.76 8.05 -2.38 -0.02 2.75 16 39 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 41 H 0.11 3.76 7.87 -2.91 -0.02 3.74 16 42 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 43 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 44 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 45 H 0.11 3.55 7.12 -2.91 -0.02 3.53 16 Total: -1.00 -82.50 381.63 -0.21 -82.71 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -2.94 Total: 25.50 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 5.33 Total: -9.76 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -2.82 Total: -96.79 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.97 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.85 Total: 47.33 kcal Atomic # 16 Polarization: -23.42 SS G_CDS: -1.59 Total: -25.01 kcal Total: -82.50 -0.21 -82.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321496256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.763 kcal (2) G-P(sol) polarization free energy of solvation -82.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds