Wall clock time and date at job start Tue Mar 31 2020 19:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.41103 * 2 1 4 4 C 1.55121 * 110.34363 * 122.44836 * 2 1 3 5 5 C 1.55157 * 101.48653 * 156.05958 * 4 2 1 6 6 H 1.09003 * 110.87254 * 82.77159 * 5 4 2 7 7 N 1.46907 * 110.71653 * 205.96924 * 5 4 2 8 8 C 1.46907 * 110.99427 * 199.97435 * 7 5 4 9 9 C 1.50701 * 109.46668 * 180.02562 * 8 7 5 10 10 C 1.38231 * 119.62027 * 95.00178 * 9 8 7 11 11 C 1.38621 * 119.16157 * 179.97438 * 10 9 8 12 12 C 1.38672 * 118.42423 * 0.02562 * 11 10 9 13 13 C 1.38179 * 119.16110 * 359.97438 * 12 11 10 14 14 N 1.31853 * 119.61900 * 274.72424 * 9 8 7 15 15 C 1.54322 * 102.94411 * 324.32970 * 5 4 2 16 16 N 1.47021 * 107.26600 * 22.19368 * 15 5 4 17 17 C 1.34780 * 125.64749 * 181.01771 * 16 15 5 18 18 O 1.21280 * 120.00423 * 180.02562 * 17 16 15 19 19 C 1.50701 * 119.99795 * 0.03050 * 17 16 15 20 20 S 1.81002 * 109.47156 * 179.97438 * 19 17 16 21 21 C 1.76193 * 100.00049 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00026 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00056 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99640 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00053 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47315 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47332 * 119.99854 * 25 23 21 28 28 H 1.48499 * 109.47328 * 240.00154 * 25 23 21 29 29 H 1.09004 * 109.47403 * 180.83410 * 1 2 3 30 30 H 1.09000 * 109.47355 * 300.83633 * 1 2 3 31 31 H 1.09005 * 109.47336 * 60.83838 * 1 2 3 32 32 H 1.09007 * 111.19359 * 37.95628 * 4 2 1 33 33 H 1.09003 * 110.94069 * 274.05341 * 4 2 1 34 34 H 1.00899 * 110.99956 * 323.92626 * 7 5 4 35 35 H 1.08997 * 109.47250 * 299.99786 * 8 7 5 36 36 H 1.08997 * 109.46775 * 60.00581 * 8 7 5 37 37 H 1.07998 * 120.41227 * 359.97438 * 10 9 8 38 38 H 1.08008 * 120.78560 * 179.97438 * 11 10 9 39 39 H 1.07999 * 120.41907 * 180.02562 * 12 11 10 40 40 H 1.08004 * 119.61814 * 179.97438 * 13 12 11 41 41 H 1.08997 * 109.88244 * 262.78321 * 15 5 4 42 42 H 1.08992 * 110.00995 * 141.68010 * 15 5 4 43 43 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 44 44 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 45 45 H 0.97010 * 119.99946 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0692 -0.7804 1.2274 5 6 3.4797 -1.1973 0.7331 6 1 4.1953 -0.3870 0.8728 7 7 3.9332 -2.4132 1.4215 8 6 5.3931 -2.5530 1.3360 9 6 5.8201 -3.8089 2.0512 10 6 5.9947 -4.9777 1.3340 11 6 6.3881 -6.1273 2.0014 12 6 6.5917 -6.0583 3.3713 13 6 6.3975 -4.8543 4.0211 14 7 6.0281 -3.7790 3.3528 15 6 3.2525 -1.4724 -0.7683 16 7 2.0431 -0.7384 -1.1683 17 6 1.4972 -0.7361 -2.4006 18 8 0.4937 -0.0906 -2.6183 19 6 2.1337 -1.5356 -3.5082 20 16 1.1740 -1.3303 -5.0290 21 6 2.1139 -2.3423 -6.1229 22 1 2.9938 -2.8546 -5.7627 23 6 1.7241 -2.4803 -7.4480 24 7 0.6521 -1.8555 -7.8870 25 14 2.7211 -3.5526 -8.6080 26 1 3.8710 -4.1397 -7.8742 27 1 1.8618 -4.6425 -9.1360 28 1 3.2234 -2.7277 -9.7360 29 1 -0.3634 -1.0276 0.0150 30 1 -0.3634 0.5268 0.8824 31 1 -0.3634 0.5008 -0.8974 32 1 1.4549 -1.6556 1.4389 33 1 2.1372 -0.1328 2.1016 34 1 3.6248 -2.4212 2.3822 35 1 5.6918 -2.6119 0.2895 36 1 5.8685 -1.6898 1.8017 37 1 5.8267 -4.9949 0.2673 38 1 6.5319 -7.0548 1.4671 39 1 6.8990 -6.9342 3.9233 40 1 6.5536 -4.7924 5.0880 41 1 3.1089 -2.5404 -0.9318 42 1 4.1075 -1.1207 -1.3455 43 1 3.1526 -1.1841 -3.6708 44 1 2.1530 -2.5896 -3.2306 45 1 0.3794 -1.9522 -8.8130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331961040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:02 Heat of formation + Delta-G solvation = 7.401439 kcal Electronic energy + Delta-G solvation = -25565.980901 eV Core-core repulsion = 21902.600988 eV Total energy + Delta-G solvation = -3663.379913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.57760 -40.01586 -37.69608 -35.48769 -32.82276 -32.41255 -32.24009 -32.03353 -29.50611 -28.60507 -25.90329 -25.80536 -25.44208 -23.85316 -22.40129 -21.80407 -20.98772 -18.89134 -17.59626 -17.29835 -17.03038 -16.57070 -16.37091 -15.89334 -15.34128 -15.08060 -14.93088 -14.78956 -14.34006 -14.11710 -13.85672 -13.60969 -13.57389 -13.17008 -12.92736 -12.83323 -12.62126 -12.54967 -12.14852 -12.02905 -11.80270 -11.75783 -11.41310 -11.09600 -11.05472 -10.99024 -10.86034 -10.73966 -10.23805 -9.83970 -9.78021 -9.42127 -9.13537 -9.05619 -8.82625 -8.42293 -8.19948 -6.47378 -6.19961 -3.89860 0.71693 0.92334 2.92731 3.12225 3.22486 3.25642 3.31018 3.34761 3.63389 3.80807 4.04118 4.21858 4.24095 4.38333 4.43359 4.50042 4.72398 4.76670 4.86496 5.01326 5.06381 5.07508 5.15026 5.15277 5.26283 5.34847 5.40376 5.40876 5.52777 5.59411 5.67208 5.69234 5.78467 5.78985 5.80410 5.84495 5.95593 6.17872 6.19724 6.31713 6.37904 6.61418 6.71802 6.94755 7.61062 7.61670 7.76193 8.37356 8.64191 9.25473 10.87537 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.002677 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.222541 B =10457.993999 C =12938.356495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 H 0.072 0.928 4 C -0.130 4.130 5 C 0.075 3.925 6 H 0.064 0.936 7 N -0.672 5.672 8 C 0.107 3.893 9 C 0.130 3.870 10 C -0.149 4.149 11 C -0.076 4.076 12 C -0.175 4.175 13 C 0.097 3.903 14 N -0.483 5.483 15 C 0.111 3.889 16 N -0.622 5.622 17 C 0.551 3.449 18 O -0.513 6.513 19 C -0.147 4.147 20 S -0.061 6.061 21 C -0.533 4.533 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.351 0.649 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.155 0.845 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.139 -4.510 25.372 28.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 H 0.090 0.910 4 C -0.168 4.168 5 C -0.035 4.035 6 H 0.082 0.918 7 N -0.304 5.304 8 C -0.022 4.022 9 C -0.008 4.008 10 C -0.169 4.169 11 C -0.102 4.102 12 C -0.195 4.195 13 C -0.060 4.060 14 N -0.193 5.193 15 C -0.013 4.013 16 N -0.360 5.360 17 C 0.340 3.660 18 O -0.387 6.387 19 C -0.297 4.297 20 S 0.165 5.835 21 C -0.681 4.681 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.170 0.830 35 H 0.110 0.890 36 H 0.070 0.930 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.172 0.828 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.262 -3.128 24.710 26.939 hybrid contribution 2.399 -1.790 -0.254 3.004 sum 12.660 -4.917 24.456 27.974 Atomic orbital electron populations 1.22174 0.93667 1.02850 1.03614 1.21807 0.95601 0.95084 0.83952 0.90992 1.23088 0.95258 1.00986 0.97461 1.22530 0.96380 0.90589 0.93996 0.91796 1.60420 1.10311 1.38451 1.21255 1.20874 0.88447 0.93049 0.99821 1.21092 0.94987 0.95048 0.89685 1.22031 0.99847 0.93073 1.01944 1.21655 0.95327 0.98727 0.94514 1.22162 1.02106 0.99698 0.95519 1.22708 0.95012 0.88112 1.00150 1.67459 1.11741 1.31252 1.08824 1.21964 0.87616 0.97950 0.93785 1.48518 1.28386 1.49752 1.09341 1.19951 0.83702 0.81170 0.81167 1.90639 1.24436 1.42681 1.80990 1.23516 1.04366 1.01895 0.99929 1.85372 1.36205 1.64523 0.97369 1.22897 1.14580 1.33651 0.96988 0.90935 1.24993 0.95371 0.95968 0.97308 1.70031 1.23158 1.40699 1.16405 0.86122 0.79627 0.79693 0.80080 1.19621 1.20581 1.20597 0.92565 0.92526 0.89009 0.89429 0.90098 0.83015 0.89031 0.92989 0.84383 0.84695 0.84847 0.82820 0.90113 0.91709 0.89484 0.89361 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 8.71 37.16 0.32 -1.87 16 2 C 0.14 1.70 3.77 -66.30 -0.25 1.45 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.15 5.94 -24.47 -0.15 -1.30 16 5 C 0.08 0.66 3.24 -65.87 -0.21 0.45 16 6 H 0.06 0.51 7.89 -51.93 -0.41 0.10 16 7 N -0.67 -5.63 6.28 -106.05 -0.67 -6.30 16 8 C 0.11 0.85 5.85 -4.97 -0.03 0.82 16 9 C 0.13 1.15 6.29 -82.59 -0.52 0.63 16 10 C -0.15 -1.20 9.72 -39.44 -0.38 -1.58 16 11 C -0.08 -0.53 10.18 -39.28 -0.40 -0.93 16 12 C -0.17 -1.11 10.11 -39.44 -0.40 -1.51 16 13 C 0.10 0.72 11.18 -17.55 -0.20 0.52 16 14 N -0.48 -4.52 10.27 -9.47 -0.10 -4.62 16 15 C 0.11 1.28 6.17 -3.07 -0.02 1.26 16 16 N -0.62 -9.19 3.24 -162.93 -0.53 -9.71 16 17 C 0.55 10.75 7.65 -10.98 -0.08 10.67 16 18 O -0.51 -11.68 13.51 5.56 0.08 -11.61 16 19 C -0.15 -3.06 5.35 36.01 0.19 -2.87 16 20 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 21 C -0.53 -15.27 9.50 30.94 0.29 -14.98 16 22 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 25 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.53 5.89 -51.93 -0.31 1.22 16 32 H 0.09 0.83 8.07 -51.93 -0.42 0.42 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.35 2.85 8.49 -39.29 -0.33 2.52 16 35 H 0.09 0.67 8.02 -51.93 -0.42 0.26 16 36 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 37 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.14 0.65 8.06 -52.48 -0.42 0.22 16 39 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.08 0.99 8.03 -51.93 -0.42 0.57 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 44 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 386.96 15.07 5.83 5.83 Total: -1.00 -34.78 386.96 -10.73 -45.51 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.92 Total: 1.13 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -1.92 Total: -7.24 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.56 Total: -46.18 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.78 -10.73 -45.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331961040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.912 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds