Wall clock time and date at job start Tue Mar 31 2020 19:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.87723 * 2 1 4 4 C 1.54321 * 110.00893 * 121.10091 * 2 1 3 5 5 C 1.55152 * 102.94431 * 97.29299 * 4 2 1 6 6 H 1.08998 * 111.00768 * 277.42597 * 5 4 2 7 7 N 1.46908 * 111.00494 * 153.57603 * 5 4 2 8 8 C 1.46901 * 110.99895 * 155.00130 * 7 5 4 9 9 C 1.50703 * 109.46658 * 179.97438 * 8 7 5 10 10 C 1.38226 * 119.61298 * 94.73176 * 9 8 7 11 11 C 1.38630 * 119.15838 * 179.75190 * 10 9 8 12 12 C 1.38671 * 118.41986 * 0.50714 * 11 10 9 13 13 C 1.38182 * 119.16642 * 359.73281 * 12 11 10 14 14 N 1.31853 * 119.62168 * 274.99803 * 9 8 7 15 15 C 1.54692 * 101.67593 * 35.33775 * 5 4 2 16 16 N 1.47025 * 109.88145 * 238.98105 * 2 1 3 17 17 C 1.34774 * 125.64574 * 59.33647 * 16 2 1 18 18 O 1.21279 * 120.00472 * 359.97438 * 17 16 2 19 19 C 1.50706 * 120.00020 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.47200 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99878 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00031 * 359.97438 * 21 20 19 23 23 C 1.38801 * 120.00096 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99737 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99933 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47409 * 89.99815 * 25 23 21 27 27 H 1.48504 * 109.46732 * 209.99538 * 25 23 21 28 28 H 1.48503 * 109.47095 * 329.99265 * 25 23 21 29 29 H 1.09001 * 109.47577 * 179.55855 * 1 2 3 30 30 H 1.09000 * 109.47564 * 299.56589 * 1 2 3 31 31 H 1.09004 * 109.47114 * 59.56007 * 1 2 3 32 32 H 1.09005 * 110.71785 * 215.66092 * 4 2 1 33 33 H 1.09000 * 110.71861 * 338.75068 * 4 2 1 34 34 H 1.00892 * 110.99674 * 31.04501 * 7 5 4 35 35 H 1.08996 * 109.47258 * 299.99882 * 8 7 5 36 36 H 1.08994 * 109.47199 * 60.00199 * 8 7 5 37 37 H 1.07997 * 120.42493 * 359.97438 * 10 9 8 38 38 H 1.08007 * 120.78888 * 180.21359 * 11 10 9 39 39 H 1.08002 * 120.42044 * 179.74835 * 12 11 10 40 40 H 1.07992 * 119.62328 * 179.97438 * 13 12 11 41 41 H 1.09008 * 110.39161 * 204.36258 * 15 5 4 42 42 H 1.08998 * 110.24197 * 82.11287 * 15 5 4 43 43 H 1.09001 * 109.46953 * 299.99667 * 19 17 16 44 44 H 1.09000 * 109.47318 * 59.99264 * 19 17 16 45 45 H 0.97001 * 119.99701 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0580 -0.7490 1.2416 5 6 2.3573 -2.1681 0.6903 6 1 1.4519 -2.7742 0.6592 7 7 3.4045 -2.8298 1.4800 8 6 3.2917 -4.2914 1.3841 9 6 4.3803 -4.9340 2.2046 10 6 4.1168 -5.3217 3.5050 11 6 5.1235 -5.9167 4.2495 12 6 6.3662 -6.0905 3.6592 13 6 6.5569 -5.6730 2.3558 14 7 5.5744 -5.1150 1.6756 15 6 2.8553 -1.8499 -0.7393 16 7 2.0300 -0.7125 -1.1849 17 6 1.7718 -0.3836 -2.4662 18 8 1.0715 0.5742 -2.7172 19 6 2.3525 -1.2068 -3.5871 20 16 1.8273 -0.5179 -5.1763 21 6 2.6263 -1.6398 -6.2752 22 1 3.2219 -2.4499 -5.8809 23 6 2.4911 -1.4818 -7.6475 24 7 1.7657 -0.4942 -8.1280 25 14 3.3376 -2.6717 -8.8124 26 1 2.4292 -3.8095 -9.1042 27 1 3.6747 -1.9705 -10.0773 28 1 4.5820 -3.1808 -8.1819 29 1 -0.3634 -1.0276 -0.0079 30 1 -0.3634 0.5071 0.8938 31 1 -0.3633 0.5207 -0.8860 32 1 2.9683 -0.2808 1.6162 33 1 1.2971 -0.7877 2.0211 34 1 3.3771 -2.5274 2.4422 35 1 2.3185 -4.6062 1.7606 36 1 3.3943 -4.5961 0.3427 37 1 3.1381 -5.1665 3.9343 38 1 4.9456 -6.2330 5.2668 39 1 7.1748 -6.5467 4.2110 40 1 7.5218 -5.8044 1.8890 41 1 2.7037 -2.7081 -1.3941 42 1 3.9083 -1.5692 -0.7181 43 1 3.4406 -1.1892 -3.5248 44 1 2.0004 -2.2349 -3.5030 45 1 1.6709 -0.3840 -9.0871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331961044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:05 Heat of formation + Delta-G solvation = 6.715058 kcal Electronic energy + Delta-G solvation = -25506.084656 eV Core-core repulsion = 21842.674980 eV Total energy + Delta-G solvation = -3663.409676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.59451 -40.02379 -37.70211 -35.55864 -32.85302 -32.38727 -32.24144 -31.99968 -29.43356 -28.62871 -25.93489 -25.88712 -25.42809 -23.89095 -22.48022 -21.94946 -20.82639 -19.00946 -17.68464 -17.30583 -16.80957 -16.57123 -16.35770 -15.92418 -15.26032 -15.12197 -14.81443 -14.76129 -14.34691 -14.14025 -13.82145 -13.63189 -13.60219 -13.32600 -12.99072 -12.90893 -12.67237 -12.54339 -12.40432 -12.03254 -11.86259 -11.68056 -11.28263 -11.16046 -11.02614 -10.96819 -10.74291 -10.71538 -10.26473 -9.76808 -9.74156 -9.46269 -9.30048 -9.02313 -8.84869 -8.42104 -8.18232 -6.45220 -6.17370 -3.87429 0.67512 0.89875 2.92727 3.13522 3.25771 3.26658 3.32192 3.36148 3.64247 3.83329 3.98296 4.21536 4.25016 4.37912 4.44991 4.47327 4.62617 4.72083 4.79224 4.98226 5.05268 5.10337 5.15169 5.17760 5.21562 5.27780 5.36781 5.45986 5.50412 5.58235 5.64311 5.67167 5.70932 5.75814 5.76802 5.86271 5.96730 6.07378 6.21697 6.28641 6.31850 6.56261 6.65542 6.93508 7.64286 7.68262 7.76390 8.40007 8.64258 9.28027 10.90082 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.002549 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.417750 B =10981.741310 C =13299.188269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.129 4.129 5 C 0.075 3.925 6 H 0.066 0.934 7 N -0.667 5.667 8 C 0.107 3.893 9 C 0.133 3.867 10 C -0.169 4.169 11 C -0.076 4.076 12 C -0.176 4.176 13 C 0.102 3.898 14 N -0.462 5.462 15 C 0.113 3.887 16 N -0.622 5.622 17 C 0.551 3.449 18 O -0.515 6.515 19 C -0.147 4.147 20 S -0.061 6.061 21 C -0.533 4.533 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.345 0.655 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.157 0.843 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 -10.306 29.350 31.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.093 0.907 4 C -0.168 4.168 5 C -0.036 4.036 6 H 0.084 0.916 7 N -0.300 5.300 8 C -0.023 4.023 9 C -0.005 4.005 10 C -0.190 4.190 11 C -0.102 4.102 12 C -0.196 4.196 13 C -0.055 4.055 14 N -0.171 5.171 15 C -0.011 4.011 16 N -0.360 5.360 17 C 0.339 3.661 18 O -0.389 6.389 19 C -0.297 4.297 20 S 0.165 5.835 21 C -0.681 4.681 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.196 1.196 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.163 0.837 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.174 0.826 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.393 -8.441 27.348 28.956 hybrid contribution 0.581 -2.466 1.096 2.760 sum 4.973 -10.907 28.444 30.867 Atomic orbital electron populations 1.22169 0.94802 1.02169 1.03078 1.21388 0.94644 0.96420 0.84012 0.90700 1.22907 1.02038 0.94708 0.97117 1.22626 0.92465 0.94471 0.94012 0.91622 1.60230 1.49115 1.04544 1.16065 1.20892 0.93161 0.87357 1.00851 1.21112 0.92725 0.95000 0.91684 1.22000 1.00666 1.01008 0.95287 1.21573 0.92879 0.95775 0.99994 1.22191 0.98253 1.02073 0.97086 1.22851 0.97992 0.93285 0.91419 1.67536 0.99962 1.11568 1.38020 1.22187 0.95782 0.89259 0.93879 1.48544 1.52027 1.30612 1.04834 1.19981 0.80012 0.84708 0.81373 1.90683 1.37332 1.28310 1.82586 1.23517 1.03871 1.02449 0.99873 1.85358 1.66824 1.40597 0.90691 1.22866 1.36207 1.15992 0.93080 0.90934 1.24990 0.95300 0.95972 0.97354 1.70024 1.37390 1.29322 1.13621 0.86172 0.79563 0.80210 0.79591 1.20308 1.20779 1.19643 0.92773 0.92147 0.90507 0.89669 0.90065 0.83657 0.93232 0.88668 0.85014 0.84887 0.84815 0.82617 0.90686 0.90219 0.89260 0.89433 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.07 37.16 0.34 -1.66 16 2 C 0.14 1.71 3.49 -66.95 -0.23 1.47 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.13 -1.08 5.90 -24.90 -0.15 -1.23 16 5 C 0.07 0.66 3.37 -65.68 -0.22 0.44 16 6 H 0.07 0.57 7.83 -51.93 -0.41 0.16 16 7 N -0.67 -5.39 6.40 -105.85 -0.68 -6.07 16 8 C 0.11 0.85 5.86 -4.97 -0.03 0.82 16 9 C 0.13 1.15 6.29 -82.59 -0.52 0.63 16 10 C -0.17 -1.10 9.72 -39.44 -0.38 -1.48 16 11 C -0.08 -0.43 10.18 -39.28 -0.40 -0.83 16 12 C -0.18 -1.06 10.11 -39.44 -0.40 -1.46 16 13 C 0.10 0.81 11.18 -17.55 -0.20 0.62 16 14 N -0.46 -4.80 10.27 -9.47 -0.10 -4.90 16 15 C 0.11 1.37 6.38 -2.65 -0.02 1.36 16 16 N -0.62 -9.36 3.08 -163.16 -0.50 -9.87 16 17 C 0.55 10.96 7.65 -10.98 -0.08 10.88 16 18 O -0.51 -12.04 14.74 5.56 0.08 -11.96 16 19 C -0.15 -3.13 5.17 36.01 0.19 -2.95 16 20 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 21 C -0.53 -15.51 9.50 30.94 0.29 -15.21 16 22 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.56 13.22 55.49 0.73 -25.83 16 25 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.20 6.73 -51.93 -0.35 0.85 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.52 7.83 -51.93 -0.41 0.12 16 34 H 0.34 2.26 8.43 -39.30 -0.33 1.93 16 35 H 0.05 0.30 7.99 -51.93 -0.41 -0.11 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 39 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.07 0.93 7.48 -51.92 -0.39 0.54 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 44 H 0.09 1.75 7.84 -51.92 -0.41 1.34 16 45 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 388.00 15.07 5.85 5.85 Total: -1.00 -35.94 388.00 -10.66 -46.60 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.90 Total: -0.10 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.91 Total: -6.58 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.54 Total: -46.66 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.94 -10.66 -46.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331961044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.313 kcal (2) G-P(sol) polarization free energy of solvation -35.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds