Wall clock time and date at job start Tue Mar 31 2020 19:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.87723 * 2 1 4 4 C 1.54321 * 110.00893 * 121.10091 * 2 1 3 5 5 C 1.55152 * 102.94431 * 97.29299 * 4 2 1 6 6 H 1.08998 * 111.00768 * 277.42597 * 5 4 2 7 7 N 1.46908 * 111.00494 * 153.57603 * 5 4 2 8 8 C 1.46901 * 110.99895 * 155.00130 * 7 5 4 9 9 C 1.50703 * 109.46658 * 179.97438 * 8 7 5 10 10 C 1.38226 * 119.61298 * 94.73176 * 9 8 7 11 11 C 1.38630 * 119.15838 * 179.75190 * 10 9 8 12 12 C 1.38671 * 118.41986 * 0.50714 * 11 10 9 13 13 C 1.38182 * 119.16642 * 359.73281 * 12 11 10 14 14 N 1.31853 * 119.62168 * 274.99803 * 9 8 7 15 15 C 1.54692 * 101.67593 * 35.33775 * 5 4 2 16 16 N 1.47025 * 109.88145 * 238.98105 * 2 1 3 17 17 C 1.34774 * 125.64574 * 59.33647 * 16 2 1 18 18 O 1.21279 * 120.00472 * 359.97438 * 17 16 2 19 19 C 1.50706 * 120.00020 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.47200 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99878 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00031 * 359.97438 * 21 20 19 23 23 C 1.38801 * 120.00096 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99737 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99933 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47409 * 89.99815 * 25 23 21 27 27 H 1.48504 * 109.46732 * 209.99538 * 25 23 21 28 28 H 1.48503 * 109.47095 * 329.99265 * 25 23 21 29 29 H 1.09001 * 109.47577 * 179.55855 * 1 2 3 30 30 H 1.09000 * 109.47564 * 299.56589 * 1 2 3 31 31 H 1.09004 * 109.47114 * 59.56007 * 1 2 3 32 32 H 1.09005 * 110.71785 * 215.66092 * 4 2 1 33 33 H 1.09000 * 110.71861 * 338.75068 * 4 2 1 34 34 H 1.00892 * 110.99674 * 31.04501 * 7 5 4 35 35 H 1.08996 * 109.47258 * 299.99882 * 8 7 5 36 36 H 1.08994 * 109.47199 * 60.00199 * 8 7 5 37 37 H 1.07997 * 120.42493 * 359.97438 * 10 9 8 38 38 H 1.08007 * 120.78888 * 180.21359 * 11 10 9 39 39 H 1.08002 * 120.42044 * 179.74835 * 12 11 10 40 40 H 1.07992 * 119.62328 * 179.97438 * 13 12 11 41 41 H 1.09008 * 110.39161 * 204.36258 * 15 5 4 42 42 H 1.08998 * 110.24197 * 82.11287 * 15 5 4 43 43 H 1.09001 * 109.46953 * 299.99667 * 19 17 16 44 44 H 1.09000 * 109.47318 * 59.99264 * 19 17 16 45 45 H 0.97001 * 119.99701 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0580 -0.7490 1.2416 5 6 2.3573 -2.1681 0.6903 6 1 1.4519 -2.7742 0.6592 7 7 3.4045 -2.8298 1.4800 8 6 3.2917 -4.2914 1.3841 9 6 4.3803 -4.9340 2.2046 10 6 4.1168 -5.3217 3.5050 11 6 5.1235 -5.9167 4.2495 12 6 6.3662 -6.0905 3.6592 13 6 6.5569 -5.6730 2.3558 14 7 5.5744 -5.1150 1.6756 15 6 2.8553 -1.8499 -0.7393 16 7 2.0300 -0.7125 -1.1849 17 6 1.7718 -0.3836 -2.4662 18 8 1.0715 0.5742 -2.7172 19 6 2.3525 -1.2068 -3.5871 20 16 1.8273 -0.5179 -5.1763 21 6 2.6263 -1.6398 -6.2752 22 1 3.2219 -2.4499 -5.8809 23 6 2.4911 -1.4818 -7.6475 24 7 1.7657 -0.4942 -8.1280 25 14 3.3376 -2.6717 -8.8124 26 1 2.4292 -3.8095 -9.1042 27 1 3.6747 -1.9705 -10.0773 28 1 4.5820 -3.1808 -8.1819 29 1 -0.3634 -1.0276 -0.0079 30 1 -0.3634 0.5071 0.8938 31 1 -0.3633 0.5207 -0.8860 32 1 2.9683 -0.2808 1.6162 33 1 1.2971 -0.7877 2.0211 34 1 3.3771 -2.5274 2.4422 35 1 2.3185 -4.6062 1.7606 36 1 3.3943 -4.5961 0.3427 37 1 3.1381 -5.1665 3.9343 38 1 4.9456 -6.2330 5.2668 39 1 7.1748 -6.5467 4.2110 40 1 7.5218 -5.8044 1.8890 41 1 2.7037 -2.7081 -1.3941 42 1 3.9083 -1.5692 -0.7181 43 1 3.4406 -1.1892 -3.5248 44 1 2.0004 -2.2349 -3.5030 45 1 1.6709 -0.3840 -9.0871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331961044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:04 Heat of formation + Delta-G solvation = -18.440750 kcal Electronic energy + Delta-G solvation = -25507.175494 eV Core-core repulsion = 21842.674980 eV Total energy + Delta-G solvation = -3664.500514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34867 -40.98938 -38.94234 -36.39876 -34.60396 -33.46315 -33.29559 -32.71072 -30.42437 -30.00449 -27.68505 -26.88209 -26.52512 -24.37151 -23.48767 -22.59584 -21.69976 -20.41516 -19.57058 -18.14017 -17.74275 -17.30292 -17.29009 -16.90056 -16.71294 -16.40784 -16.16903 -15.80979 -15.70418 -15.08859 -14.89901 -14.59091 -14.42419 -14.28639 -14.03783 -13.96504 -13.91516 -13.66061 -13.28376 -13.18327 -13.01328 -12.97861 -12.89506 -12.60459 -12.44409 -12.09787 -12.00376 -11.74274 -11.60964 -11.15750 -10.88866 -10.75637 -10.31397 -10.27268 -9.95940 -9.74141 -9.43831 -8.69625 -8.36230 -6.14903 0.18965 0.43522 1.22341 1.41312 1.43021 1.55189 1.55833 2.04573 2.25803 2.76897 2.97571 3.14382 3.29421 3.37233 3.52662 3.58942 3.84832 3.91706 4.03220 4.07672 4.18558 4.21793 4.24380 4.29749 4.37565 4.40101 4.42787 4.51490 4.57168 4.64811 4.71980 4.83191 4.87856 4.90662 4.94464 5.00137 5.08486 5.25788 5.29980 5.32735 5.39827 5.50462 5.83232 5.95455 6.18195 6.36676 6.43907 7.04657 7.12437 7.16821 8.73134 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.002549 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.417750 B =10981.741310 C =13299.188269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 H 0.065 0.935 4 C -0.111 4.111 5 C 0.089 3.911 6 H 0.076 0.924 7 N -0.672 5.672 8 C 0.110 3.890 9 C 0.112 3.888 10 C -0.167 4.167 11 C -0.079 4.079 12 C -0.173 4.173 13 C 0.079 3.921 14 N -0.505 5.505 15 C 0.104 3.896 16 N -0.612 5.612 17 C 0.548 3.452 18 O -0.559 6.559 19 C -0.121 4.121 20 S -0.145 6.145 21 C -0.547 4.547 22 H 0.080 0.920 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.999 3.001 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.260 1.260 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.034 0.966 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.358 0.642 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.669 -12.519 32.513 35.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.026 3.974 3 H 0.083 0.917 4 C -0.149 4.149 5 C -0.021 4.021 6 H 0.094 0.906 7 N -0.306 5.306 8 C -0.019 4.019 9 C -0.026 4.026 10 C -0.187 4.187 11 C -0.105 4.105 12 C -0.193 4.193 13 C -0.078 4.078 14 N -0.215 5.215 15 C -0.019 4.019 16 N -0.347 5.347 17 C 0.336 3.664 18 O -0.438 6.438 19 C -0.272 4.272 20 S 0.082 5.918 21 C -0.695 4.695 22 H 0.098 0.902 23 C -0.191 4.191 24 N -0.546 5.546 25 Si 0.821 3.179 26 H -0.191 1.191 27 H -0.200 1.200 28 H -0.184 1.184 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.053 0.947 32 H 0.112 0.888 33 H 0.132 0.868 34 H 0.178 0.822 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.174 0.826 38 H 0.180 0.820 39 H 0.176 0.824 40 H 0.182 0.818 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.176 -10.678 30.583 32.804 hybrid contribution 0.391 -1.798 0.275 1.860 sum 5.567 -12.476 30.857 33.746 Atomic orbital electron populations 1.22111 0.94534 1.02357 1.02611 1.21711 0.94968 0.96408 0.84326 0.91723 1.22861 1.03255 0.93250 0.95565 1.22436 0.92739 0.95156 0.91798 0.90591 1.60078 1.48793 1.04829 1.16855 1.20851 0.94227 0.87081 0.99741 1.21274 0.92429 0.96085 0.92849 1.22266 1.01982 1.00092 0.94381 1.21997 0.92387 0.94889 1.01203 1.22489 0.99349 1.01117 0.96355 1.23140 0.98120 0.93963 0.92598 1.67461 1.01209 1.13150 1.39639 1.22424 0.95177 0.87933 0.96377 1.48471 1.51058 1.31185 1.04021 1.19664 0.79893 0.84108 0.82736 1.90666 1.39460 1.30078 1.83561 1.23317 1.04300 1.02869 0.96734 1.85491 1.68087 1.42681 0.95518 1.23175 1.36443 1.16127 0.93740 0.90231 1.26138 0.95812 0.97896 0.99249 1.70182 1.38861 1.31369 1.14236 0.84943 0.78629 0.77539 0.76806 1.19141 1.20050 1.18367 0.92130 0.88918 0.94700 0.88758 0.86760 0.82154 0.90984 0.90900 0.82577 0.81993 0.82353 0.81822 0.91075 0.90690 0.88279 0.87971 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 9.07 71.98 0.65 -3.01 16 2 C 0.13 2.99 3.49 45.34 0.16 3.15 16 3 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.11 -1.48 5.90 31.78 0.19 -1.29 16 5 C 0.09 1.35 3.37 46.23 0.16 1.51 16 6 H 0.08 1.06 7.83 -2.39 -0.02 1.04 16 7 N -0.67 -9.19 6.40 -488.79 -3.13 -12.32 16 8 C 0.11 1.55 5.86 85.56 0.50 2.05 16 9 C 0.11 1.76 6.29 42.55 0.27 2.03 16 10 C -0.17 -1.69 9.72 22.36 0.22 -1.47 16 11 C -0.08 -0.65 10.18 22.47 0.23 -0.43 16 12 C -0.17 -1.71 10.11 22.36 0.23 -1.48 16 13 C 0.08 1.19 11.18 84.67 0.95 2.14 16 14 N -0.50 -10.27 10.27 -183.89 -1.89 -12.16 16 15 C 0.10 2.43 6.38 86.78 0.55 2.98 16 16 N -0.61 -18.28 3.08 -788.50 -2.43 -20.71 16 17 C 0.55 22.48 7.65 87.66 0.67 23.15 16 18 O -0.56 -27.50 14.74 -3.02 -0.04 -27.54 16 19 C -0.12 -5.31 5.17 71.24 0.37 -4.95 16 20 S -0.14 -8.43 20.57 -56.49 -1.16 -9.59 16 21 C -0.55 -32.46 9.50 67.95 0.65 -31.82 16 22 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 23 C 0.01 0.81 5.49 84.86 0.47 1.28 16 24 N -0.91 -57.10 13.22 21.65 0.29 -56.81 16 25 Si 1.00 44.87 29.55 68.60 2.03 46.90 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.03 1.11 6.73 -2.38 -0.02 1.09 16 32 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.11 0.88 7.83 -2.39 -0.02 0.86 16 34 H 0.36 3.46 8.43 -89.70 -0.76 2.71 16 35 H 0.07 0.67 7.99 -2.39 -0.02 0.65 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 37 H 0.16 0.71 8.06 -2.91 -0.02 0.68 16 38 H 0.16 0.35 8.06 -2.91 -0.02 0.32 16 39 H 0.16 0.66 8.06 -2.91 -0.02 0.63 16 40 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.07 1.72 7.48 -2.38 -0.02 1.70 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.10 4.11 8.14 -2.39 -0.02 4.09 16 44 H 0.10 4.13 7.84 -2.40 -0.02 4.11 16 45 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -82.96 388.00 0.13 -82.82 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.23 Total: 15.58 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 6.25 Total: -6.15 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -7.16 Total: -102.01 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.04 Total: -27.54 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.59 kcal Total: -82.96 0.13 -82.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331961044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.380 kcal (2) G-P(sol) polarization free energy of solvation -82.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds