Wall clock time and date at job start Tue Mar 31 2020 19:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.32938 * 2 1 4 4 C 1.54908 * 110.37266 * 237.76124 * 2 1 3 5 5 C 1.55150 * 101.58490 * 204.15607 * 4 2 1 6 6 H 1.09003 * 110.71819 * 277.13554 * 5 4 2 7 7 N 1.46897 * 110.72077 * 153.86592 * 5 4 2 8 8 C 1.46901 * 110.99906 * 154.99771 * 7 5 4 9 9 C 1.50707 * 109.46802 * 179.97438 * 8 7 5 10 10 C 1.38221 * 119.61822 * 95.00020 * 9 8 7 11 11 C 1.38628 * 119.16148 * 179.97438 * 10 9 8 12 12 C 1.38674 * 118.42192 * 0.02562 * 11 10 9 13 13 C 1.38186 * 119.15795 * 359.97438 * 12 11 10 14 14 N 1.31859 * 119.61603 * 274.72257 * 9 8 7 15 15 C 1.54324 * 102.94580 * 35.49594 * 5 4 2 16 16 N 1.47020 * 107.26966 * 337.81096 * 15 5 4 17 17 C 1.34780 * 125.64565 * 178.97359 * 16 15 5 18 18 O 1.21286 * 119.99828 * 179.97438 * 17 16 15 19 19 C 1.50698 * 120.00101 * 359.95701 * 17 16 15 20 20 S 1.80999 * 109.47078 * 179.97438 * 19 17 16 21 21 C 1.76195 * 100.00158 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99977 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00348 * 180.02562 * 21 20 19 24 24 N 1.31630 * 119.99980 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00139 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47106 * 89.99970 * 25 23 21 27 27 H 1.48500 * 109.47435 * 209.99563 * 25 23 21 28 28 H 1.48494 * 109.47448 * 330.00142 * 25 23 21 29 29 H 1.09002 * 109.47153 * 182.23844 * 1 2 3 30 30 H 1.09001 * 109.46832 * 62.24034 * 1 2 3 31 31 H 1.09004 * 109.47261 * 302.24016 * 1 2 3 32 32 H 1.09006 * 110.99972 * 322.22487 * 4 2 1 33 33 H 1.08999 * 111.00546 * 86.07017 * 4 2 1 34 34 H 1.00905 * 110.99675 * 278.94775 * 7 5 4 35 35 H 1.09001 * 109.47026 * 299.99209 * 8 7 5 36 36 H 1.08992 * 109.47575 * 60.00081 * 8 7 5 37 37 H 1.08009 * 120.42348 * 359.97438 * 10 9 8 38 38 H 1.08004 * 120.79120 * 179.97438 * 11 10 9 39 39 H 1.07998 * 120.41985 * 180.02562 * 12 11 10 40 40 H 1.08001 * 119.60997 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.87905 * 97.22990 * 15 5 4 42 42 H 1.08996 * 109.88065 * 218.23781 * 15 5 4 43 43 H 1.08997 * 109.46971 * 299.99985 * 19 17 16 44 44 H 1.09001 * 109.46694 * 60.00333 * 19 17 16 45 45 H 0.96998 * 120.00239 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0692 -0.7747 -1.2283 5 6 3.4778 -1.1990 -0.7352 6 1 4.1945 -0.3893 -0.8724 7 7 3.9262 -2.4148 -1.4272 8 6 5.3927 -2.4996 -1.4452 9 6 5.8143 -3.7571 -2.1610 10 6 6.1277 -3.7049 -3.5062 11 6 6.5149 -4.8671 -4.1551 12 6 6.5720 -6.0438 -3.4236 13 6 6.2440 -6.0188 -2.0815 14 7 5.8851 -4.8932 -1.4955 15 6 3.2494 -1.4775 0.7654 16 7 2.0431 -0.7395 1.1676 17 6 1.4972 -0.7386 2.3999 18 8 0.4964 -0.0895 2.6193 19 6 2.1300 -1.5445 3.5050 20 16 1.1720 -1.3383 5.0267 21 6 2.1080 -2.3569 6.1180 22 1 2.9855 -2.8722 5.7562 23 6 1.7178 -2.4970 7.4425 24 7 0.6486 -1.8685 7.8837 25 14 2.7098 -3.5774 8.5993 26 1 3.7640 -2.7628 9.2554 27 1 1.8117 -4.1505 9.6337 28 1 3.3425 -4.6776 7.8284 29 1 -0.3633 -1.0269 0.0401 30 1 -0.3633 0.4787 -0.9094 31 1 -0.3634 0.5482 0.8692 32 1 1.4512 -1.6467 -1.4424 33 1 2.1399 -0.1243 -2.1002 34 1 3.5214 -3.2390 -1.0089 35 1 5.8005 -1.6319 -1.9637 36 1 5.7680 -2.5212 -0.4222 37 1 6.0717 -2.7705 -4.0450 38 1 6.7653 -4.8566 -5.2057 39 1 6.8699 -6.9679 -3.8966 40 1 6.2856 -6.9311 -1.5049 41 1 3.1014 -2.5455 0.9259 42 1 4.1076 -1.1317 1.3414 43 1 2.1446 -2.5975 3.2242 44 1 3.1504 -1.1979 3.6687 45 1 0.3761 -1.9661 8.8094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331961046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:07 Heat of formation + Delta-G solvation = 6.820224 kcal Electronic energy + Delta-G solvation = -25554.372169 eV Core-core repulsion = 21890.967053 eV Total energy + Delta-G solvation = -3663.405116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.59371 -40.05663 -37.73022 -35.47607 -32.83317 -32.41508 -32.19293 -32.11052 -29.48023 -28.61499 -26.00569 -25.60682 -25.41402 -23.87312 -22.37699 -21.98858 -21.07711 -18.94106 -17.59026 -17.44811 -16.85736 -16.62820 -16.26350 -16.00816 -15.25562 -15.19824 -14.85870 -14.78541 -14.22354 -14.08144 -13.87855 -13.64104 -13.36002 -13.25840 -12.92494 -12.84331 -12.71573 -12.55805 -12.14130 -12.05521 -11.97664 -11.74663 -11.51490 -11.08906 -11.04957 -10.99076 -10.83448 -10.74244 -10.25840 -9.81145 -9.79454 -9.44671 -9.19924 -9.05058 -8.78947 -8.44018 -8.21753 -6.48322 -6.20098 -3.90458 0.70985 0.91322 2.91154 3.09526 3.23491 3.25945 3.30700 3.34388 3.62230 3.81568 4.05159 4.21855 4.29347 4.38685 4.43705 4.49375 4.68947 4.75328 4.80258 5.01196 5.05468 5.09019 5.13801 5.15026 5.19714 5.32060 5.39993 5.40297 5.50150 5.53720 5.65850 5.71514 5.76061 5.78542 5.79914 5.85948 5.92196 6.15988 6.20112 6.30801 6.37039 6.59739 6.69202 6.93140 7.61183 7.63760 7.72436 8.36925 8.61549 9.25221 10.87341 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010318 B = 0.002644 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.087411 B =10587.118991 C =13012.514064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 H 0.072 0.928 4 C -0.115 4.115 5 C 0.077 3.923 6 H 0.096 0.904 7 N -0.670 5.670 8 C 0.105 3.895 9 C 0.130 3.870 10 C -0.152 4.152 11 C -0.078 4.078 12 C -0.175 4.175 13 C 0.101 3.899 14 N -0.479 5.479 15 C 0.077 3.923 16 N -0.620 5.620 17 C 0.550 3.450 18 O -0.511 6.511 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.351 0.649 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.156 0.844 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.347 -3.361 -27.226 30.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.031 3.969 3 H 0.090 0.910 4 C -0.153 4.153 5 C -0.033 4.033 6 H 0.114 0.886 7 N -0.301 5.301 8 C -0.024 4.024 9 C -0.008 4.008 10 C -0.172 4.172 11 C -0.104 4.104 12 C -0.195 4.195 13 C -0.056 4.056 14 N -0.189 5.189 15 C -0.049 4.049 16 N -0.359 5.359 17 C 0.339 3.661 18 O -0.385 6.385 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.171 0.829 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.173 0.827 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.460 -2.086 -26.390 28.464 hybrid contribution 2.385 -1.912 0.475 3.094 sum 12.844 -3.999 -25.915 29.198 Atomic orbital electron populations 1.22126 0.93707 1.02984 1.03140 1.21876 0.95580 0.95313 0.84139 0.90983 1.22872 0.94873 1.00669 0.96915 1.22654 0.97715 0.93031 0.89939 0.88632 1.60659 1.06496 1.05176 1.57770 1.20882 0.88834 0.93362 0.99326 1.21117 0.94943 0.93473 0.91266 1.21957 1.00330 0.99629 0.95300 1.21617 0.95914 0.92499 1.00354 1.22173 1.02029 0.99325 0.95996 1.22770 0.94255 0.96086 0.92515 1.67502 1.12809 0.98686 1.39901 1.22752 0.88543 0.97152 0.96474 1.48500 1.28318 1.49585 1.09464 1.19975 0.83680 0.81289 0.81184 1.90654 1.24488 1.42498 1.80889 1.23520 1.04434 1.01745 1.00093 1.85359 1.36479 1.64130 0.97333 1.22857 1.14870 1.33424 0.97105 0.90999 1.24988 0.95336 0.95981 0.97277 1.70018 1.23202 1.40654 1.16426 0.86173 0.79474 0.80039 0.79854 1.20278 1.20738 1.19679 0.92619 0.92422 0.89424 0.90050 0.89728 0.82908 0.89182 0.92696 0.84657 0.84840 0.84823 0.82671 0.91364 0.91380 0.89506 0.89523 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.59 37.16 0.32 -1.83 16 2 C 0.13 1.63 3.77 -66.42 -0.25 1.38 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.11 -1.04 6.19 -24.59 -0.15 -1.19 16 5 C 0.08 0.66 3.28 -65.88 -0.22 0.45 16 6 H 0.10 0.71 7.83 -51.93 -0.41 0.30 16 7 N -0.67 -5.57 6.37 -106.06 -0.68 -6.25 16 8 C 0.11 0.81 5.86 -4.97 -0.03 0.78 16 9 C 0.13 1.14 6.29 -82.58 -0.52 0.62 16 10 C -0.15 -1.07 9.72 -39.44 -0.38 -1.46 16 11 C -0.08 -0.48 10.18 -39.28 -0.40 -0.88 16 12 C -0.18 -1.10 10.11 -39.44 -0.40 -1.50 16 13 C 0.10 0.81 11.18 -17.55 -0.20 0.62 16 14 N -0.48 -4.86 10.27 -9.47 -0.10 -4.96 16 15 C 0.08 0.87 6.21 -3.07 -0.02 0.85 16 16 N -0.62 -9.14 3.24 -163.05 -0.53 -9.67 16 17 C 0.55 10.79 7.65 -10.98 -0.08 10.71 16 18 O -0.51 -11.70 13.58 5.55 0.08 -11.62 16 19 C -0.15 -3.12 5.35 36.00 0.19 -2.93 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.53 -15.48 9.50 30.94 0.29 -15.18 16 22 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 25 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.45 6.09 -51.93 -0.32 1.13 16 32 H 0.08 0.79 8.06 -51.93 -0.42 0.38 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.35 3.31 8.04 -39.29 -0.32 2.99 16 35 H 0.09 0.54 7.98 -51.93 -0.41 0.13 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 38 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 39 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 41 H 0.07 0.80 7.49 -51.93 -0.39 0.41 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 44 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -35.14 386.48 -10.72 -45.86 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.88 Total: 1.25 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -1.94 Total: -7.53 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -0.57 Total: -46.59 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.14 -10.72 -45.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331961046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.677 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds