Wall clock time and date at job start Tue Mar 31 2020 19:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.32938 * 2 1 4 4 C 1.54908 * 110.37266 * 237.76124 * 2 1 3 5 5 C 1.55150 * 101.58490 * 204.15607 * 4 2 1 6 6 H 1.09003 * 110.71819 * 277.13554 * 5 4 2 7 7 N 1.46897 * 110.72077 * 153.86592 * 5 4 2 8 8 C 1.46901 * 110.99906 * 154.99771 * 7 5 4 9 9 C 1.50707 * 109.46802 * 179.97438 * 8 7 5 10 10 C 1.38221 * 119.61822 * 95.00020 * 9 8 7 11 11 C 1.38628 * 119.16148 * 179.97438 * 10 9 8 12 12 C 1.38674 * 118.42192 * 0.02562 * 11 10 9 13 13 C 1.38186 * 119.15795 * 359.97438 * 12 11 10 14 14 N 1.31859 * 119.61603 * 274.72257 * 9 8 7 15 15 C 1.54324 * 102.94580 * 35.49594 * 5 4 2 16 16 N 1.47020 * 107.26966 * 337.81096 * 15 5 4 17 17 C 1.34780 * 125.64565 * 178.97359 * 16 15 5 18 18 O 1.21286 * 119.99828 * 179.97438 * 17 16 15 19 19 C 1.50698 * 120.00101 * 359.95701 * 17 16 15 20 20 S 1.80999 * 109.47078 * 179.97438 * 19 17 16 21 21 C 1.76195 * 100.00158 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99977 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00348 * 180.02562 * 21 20 19 24 24 N 1.31630 * 119.99980 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00139 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47106 * 89.99970 * 25 23 21 27 27 H 1.48500 * 109.47435 * 209.99563 * 25 23 21 28 28 H 1.48494 * 109.47448 * 330.00142 * 25 23 21 29 29 H 1.09002 * 109.47153 * 182.23844 * 1 2 3 30 30 H 1.09001 * 109.46832 * 62.24034 * 1 2 3 31 31 H 1.09004 * 109.47261 * 302.24016 * 1 2 3 32 32 H 1.09006 * 110.99972 * 322.22487 * 4 2 1 33 33 H 1.08999 * 111.00546 * 86.07017 * 4 2 1 34 34 H 1.00905 * 110.99675 * 278.94775 * 7 5 4 35 35 H 1.09001 * 109.47026 * 299.99209 * 8 7 5 36 36 H 1.08992 * 109.47575 * 60.00081 * 8 7 5 37 37 H 1.08009 * 120.42348 * 359.97438 * 10 9 8 38 38 H 1.08004 * 120.79120 * 179.97438 * 11 10 9 39 39 H 1.07998 * 120.41985 * 180.02562 * 12 11 10 40 40 H 1.08001 * 119.60997 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.87905 * 97.22990 * 15 5 4 42 42 H 1.08996 * 109.88065 * 218.23781 * 15 5 4 43 43 H 1.08997 * 109.46971 * 299.99985 * 19 17 16 44 44 H 1.09001 * 109.46694 * 60.00333 * 19 17 16 45 45 H 0.96998 * 120.00239 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0692 -0.7747 -1.2283 5 6 3.4778 -1.1990 -0.7352 6 1 4.1945 -0.3893 -0.8724 7 7 3.9262 -2.4148 -1.4272 8 6 5.3927 -2.4996 -1.4452 9 6 5.8143 -3.7571 -2.1610 10 6 6.1277 -3.7049 -3.5062 11 6 6.5149 -4.8671 -4.1551 12 6 6.5720 -6.0438 -3.4236 13 6 6.2440 -6.0188 -2.0815 14 7 5.8851 -4.8932 -1.4955 15 6 3.2494 -1.4775 0.7654 16 7 2.0431 -0.7395 1.1676 17 6 1.4972 -0.7386 2.3999 18 8 0.4964 -0.0895 2.6193 19 6 2.1300 -1.5445 3.5050 20 16 1.1720 -1.3383 5.0267 21 6 2.1080 -2.3569 6.1180 22 1 2.9855 -2.8722 5.7562 23 6 1.7178 -2.4970 7.4425 24 7 0.6486 -1.8685 7.8837 25 14 2.7098 -3.5774 8.5993 26 1 3.7640 -2.7628 9.2554 27 1 1.8117 -4.1505 9.6337 28 1 3.3425 -4.6776 7.8284 29 1 -0.3633 -1.0269 0.0401 30 1 -0.3633 0.4787 -0.9094 31 1 -0.3634 0.5482 0.8692 32 1 1.4512 -1.6467 -1.4424 33 1 2.1399 -0.1243 -2.1002 34 1 3.5214 -3.2390 -1.0089 35 1 5.8005 -1.6319 -1.9637 36 1 5.7680 -2.5212 -0.4222 37 1 6.0717 -2.7705 -4.0450 38 1 6.7653 -4.8566 -5.2057 39 1 6.8699 -6.9679 -3.8966 40 1 6.2856 -6.9311 -1.5049 41 1 3.1014 -2.5455 0.9259 42 1 4.1076 -1.1317 1.3414 43 1 2.1446 -2.5975 3.2242 44 1 3.1504 -1.1979 3.6687 45 1 0.3761 -1.9661 8.8094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331961046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:07 Heat of formation + Delta-G solvation = -17.429994 kcal Electronic energy + Delta-G solvation = -25555.423737 eV Core-core repulsion = 21890.967053 eV Total energy + Delta-G solvation = -3664.456684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37670 -40.99458 -38.93059 -36.32907 -34.61982 -33.43954 -33.33169 -32.78513 -30.42393 -30.01868 -27.69911 -26.81039 -26.38102 -24.38136 -23.39629 -22.62384 -21.89011 -20.43146 -19.46668 -18.23868 -17.76827 -17.48790 -17.14819 -16.91404 -16.68922 -16.45294 -16.20830 -15.88236 -15.65186 -15.09968 -14.76763 -14.66815 -14.35864 -14.34010 -14.02525 -13.77356 -13.72841 -13.47824 -13.42326 -13.19192 -13.00953 -12.98096 -12.90642 -12.62685 -12.52675 -12.30560 -11.99063 -11.75690 -11.70110 -11.17273 -10.77193 -10.69678 -10.35681 -10.33006 -9.97162 -9.75314 -9.42400 -8.71115 -8.37725 -6.16498 0.19934 0.41939 1.21129 1.39971 1.41941 1.53750 1.55575 2.04968 2.24340 2.75666 2.96084 3.15698 3.25887 3.38307 3.53511 3.63009 3.83973 3.93363 4.03919 4.08040 4.11393 4.20424 4.26209 4.27409 4.30247 4.37041 4.43738 4.54507 4.59063 4.63861 4.71603 4.77752 4.84500 4.92136 4.94785 5.05849 5.23387 5.27799 5.30299 5.33134 5.37904 5.57236 5.82841 5.94950 6.16353 6.19060 6.39401 7.03139 7.10169 7.13382 8.71607 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010318 B = 0.002644 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.087411 B =10587.118991 C =13012.514064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.127 3.873 3 H 0.085 0.915 4 C -0.100 4.100 5 C 0.092 3.908 6 H 0.119 0.881 7 N -0.664 5.664 8 C 0.108 3.892 9 C 0.109 3.891 10 C -0.155 4.155 11 C -0.081 4.081 12 C -0.173 4.173 13 C 0.078 3.922 14 N -0.515 5.515 15 C 0.068 3.932 16 N -0.612 5.612 17 C 0.546 3.454 18 O -0.554 6.554 19 C -0.122 4.122 20 S -0.144 6.144 21 C -0.548 4.548 22 H 0.079 0.921 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.999 3.001 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.260 1.260 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.343 0.657 35 H 0.112 0.888 36 H 0.043 0.957 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.843 -4.077 -29.941 33.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 H 0.103 0.897 4 C -0.139 4.139 5 C -0.019 4.019 6 H 0.136 0.864 7 N -0.294 5.294 8 C -0.021 4.021 9 C -0.029 4.029 10 C -0.175 4.175 11 C -0.107 4.107 12 C -0.193 4.193 13 C -0.078 4.078 14 N -0.226 5.226 15 C -0.057 4.057 16 N -0.347 5.347 17 C 0.334 3.666 18 O -0.432 6.432 19 C -0.273 4.273 20 S 0.083 5.917 21 C -0.696 4.696 22 H 0.097 0.903 23 C -0.191 4.191 24 N -0.546 5.546 25 Si 0.820 3.180 26 H -0.191 1.191 27 H -0.200 1.200 28 H -0.184 1.184 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.162 0.838 35 H 0.130 0.870 36 H 0.061 0.939 37 H 0.173 0.827 38 H 0.179 0.821 39 H 0.176 0.824 40 H 0.182 0.818 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.992 -2.809 -29.166 32.053 hybrid contribution 1.643 -1.703 1.152 2.632 sum 14.635 -4.512 -28.014 31.927 Atomic orbital electron populations 1.22046 0.94777 1.01715 1.02982 1.22183 0.94861 0.96270 0.84211 0.89720 1.22816 0.94508 1.00469 0.96083 1.22629 0.98084 0.93833 0.87393 0.86357 1.60694 1.07030 1.04651 1.57014 1.20942 0.88189 0.94046 0.98948 1.21326 0.95951 0.93382 0.92236 1.22224 0.99662 1.00903 0.94744 1.22023 0.94965 0.92021 1.01689 1.22474 1.00902 1.00625 0.95321 1.23088 0.94911 0.96083 0.93755 1.67452 1.14132 0.99726 1.41265 1.23069 0.87096 0.96510 0.98989 1.48450 1.28773 1.49029 1.08474 1.19661 0.83412 0.81053 0.82437 1.90650 1.26288 1.44333 1.81925 1.23318 1.03753 1.02887 0.97318 1.85494 1.39470 1.64885 1.01809 1.23168 1.15077 1.33598 0.97731 0.90300 1.26133 0.96445 0.97358 0.99129 1.70176 1.25092 1.42268 1.17071 0.84950 0.77786 0.78040 0.77183 1.19146 1.20024 1.18375 0.94100 0.89235 0.93148 0.90672 0.86718 0.83768 0.86992 0.93912 0.82698 0.82081 0.82379 0.81763 0.91807 0.90772 0.88487 0.88135 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 8.59 71.98 0.62 -3.52 16 2 C 0.13 2.88 3.77 45.47 0.17 3.05 16 3 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 4 C -0.10 -1.50 6.19 31.98 0.20 -1.30 16 5 C 0.09 1.30 3.28 46.10 0.15 1.45 16 6 H 0.12 1.24 7.83 -2.39 -0.02 1.23 16 7 N -0.66 -9.48 6.37 -489.46 -3.12 -12.60 16 8 C 0.11 1.44 5.86 85.56 0.50 1.94 16 9 C 0.11 1.74 6.29 42.55 0.27 2.01 16 10 C -0.16 -1.80 9.72 22.36 0.22 -1.58 16 11 C -0.08 -0.77 10.18 22.47 0.23 -0.54 16 12 C -0.17 -1.83 10.11 22.36 0.23 -1.61 16 13 C 0.08 1.20 11.18 84.67 0.95 2.15 16 14 N -0.52 -10.18 10.27 -183.88 -1.89 -12.07 16 15 C 0.07 1.44 6.21 86.73 0.54 1.98 16 16 N -0.61 -17.63 3.24 -788.15 -2.56 -20.19 16 17 C 0.55 21.93 7.65 87.66 0.67 22.60 16 18 O -0.55 -26.57 13.58 -3.05 -0.04 -26.61 16 19 C -0.12 -5.25 5.35 71.24 0.38 -4.87 16 20 S -0.14 -8.29 20.57 -56.49 -1.16 -9.45 16 21 C -0.55 -32.32 9.50 67.95 0.65 -31.67 16 22 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 23 C 0.01 0.83 5.49 84.86 0.47 1.30 16 24 N -0.91 -56.84 13.22 21.65 0.29 -56.55 16 25 Si 1.00 44.60 29.55 68.60 2.03 46.63 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 28 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 29 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 1.72 6.09 -2.38 -0.01 1.71 16 32 H 0.07 1.27 8.06 -2.38 -0.02 1.25 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.34 6.02 8.04 -89.69 -0.72 5.30 16 35 H 0.11 0.97 7.98 -2.39 -0.02 0.95 16 36 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 39 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 40 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 41 H 0.06 1.44 7.49 -2.39 -0.02 1.42 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 44 H 0.10 4.02 8.14 -2.40 -0.02 4.00 16 45 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -80.45 386.48 0.04 -80.41 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.27 Total: 19.05 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 6.23 Total: -8.62 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -7.28 Total: -101.41 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.04 Total: -26.61 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -80.45 0.04 -80.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331961046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.978 kcal (2) G-P(sol) polarization free energy of solvation -80.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds