Wall clock time and date at job start Tue Mar 31 2020 19:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.52738 * 2 1 4 4 O 1.43085 * 109.52309 * 239.87379 * 2 1 3 5 5 C 1.43075 * 113.58945 * 182.08064 * 4 2 1 6 6 C 1.53140 * 109.15475 * 57.95226 * 5 4 2 7 7 O 1.43077 * 109.14808 * 304.68666 * 6 5 4 8 8 C 1.43074 * 113.59488 * 57.95270 * 7 6 5 9 9 H 1.08999 * 109.52613 * 182.13996 * 8 7 6 10 10 C 1.50705 * 109.52668 * 61.94613 * 8 7 6 11 11 O 1.21291 * 119.99901 * 351.88558 * 10 8 7 12 12 N 1.34775 * 120.00193 * 171.88477 * 10 8 7 13 13 C 1.39916 * 119.99972 * 184.49560 * 12 10 8 14 14 C 1.38934 * 120.04089 * 144.36158 * 13 12 10 15 15 C 1.38122 * 120.03858 * 179.76584 * 14 13 12 16 16 C 1.38214 * 120.12412 * 0.51610 * 15 14 13 17 17 C 1.38764 * 120.08497 * 359.73765 * 16 15 14 18 18 O 1.35909 * 120.01905 * 180.02562 * 17 16 15 19 19 C 1.42895 * 116.99814 * 359.97438 * 18 17 16 20 20 C 1.53005 * 109.46816 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47099 * 179.97438 * 20 19 18 22 22 H 1.08001 * 120.00121 * 0.02562 * 21 20 19 23 23 C 1.37878 * 119.99744 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00251 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99711 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47385 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47189 * 120.00215 * 25 23 21 28 28 H 1.48501 * 109.47162 * 240.00377 * 25 23 21 29 29 C 1.38622 * 119.96122 * 0.02562 * 17 16 15 30 30 H 1.09002 * 109.47350 * 172.85315 * 1 2 3 31 31 H 1.08999 * 109.47402 * 292.85691 * 1 2 3 32 32 H 1.09003 * 109.47268 * 52.85953 * 1 2 3 33 33 H 1.08999 * 109.52273 * 177.85786 * 5 4 2 34 34 H 1.09004 * 109.52659 * 298.04673 * 5 4 2 35 35 H 1.09004 * 109.52019 * 64.58468 * 6 5 4 36 36 H 1.08995 * 109.52881 * 184.78607 * 6 5 4 37 37 H 0.96995 * 119.99885 * 4.49565 * 12 10 8 38 38 H 1.07995 * 119.98372 * 0.03088 * 14 13 12 39 39 H 1.08002 * 119.93884 * 180.25564 * 15 14 13 40 40 H 1.08005 * 119.95610 * 179.72237 * 16 15 14 41 41 H 1.08997 * 109.47507 * 299.99655 * 19 18 17 42 42 H 1.09006 * 109.47252 * 60.00490 * 19 18 17 43 43 H 1.08997 * 109.47079 * 300.00258 * 20 19 18 44 44 H 1.09002 * 109.46881 * 60.00043 * 20 19 18 45 45 H 0.96997 * 120.00052 * 179.97438 * 24 23 21 46 46 H 1.07996 * 120.06347 * 180.02562 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 8 2.0081 -0.6769 -1.1664 5 6 3.4344 -0.7691 -1.2305 6 6 3.9477 -1.4942 0.0169 7 8 3.4695 -0.8173 1.1832 8 6 2.0432 -0.7251 1.2474 9 1 1.7539 -0.1672 2.1380 10 6 1.4509 -2.1097 1.3045 11 8 2.1607 -3.0800 1.1439 12 7 0.1325 -2.2698 1.5341 13 6 -0.4010 -3.5549 1.6808 14 6 -1.4386 -3.7791 2.5771 15 6 -1.9685 -5.0468 2.7183 16 6 -1.4614 -6.0971 1.9768 17 6 -0.4217 -5.8801 1.0839 18 8 0.0756 -6.9138 0.3550 19 6 -0.5194 -8.1969 0.5592 20 6 0.1662 -9.2261 -0.3418 21 6 -0.4608 -10.5794 -0.1260 22 1 -1.2679 -10.6938 0.5825 23 6 -0.0041 -11.6714 -0.8331 24 7 0.9790 -11.5321 -1.6955 25 14 -0.7818 -13.3487 -0.5662 26 1 -1.8603 -13.2385 0.4487 27 1 -1.3550 -13.8378 -1.8458 28 1 0.2513 -14.3031 -0.0896 29 6 0.1096 -4.6083 0.9357 30 1 -0.3634 -1.0197 -0.1279 31 1 -0.3634 0.3992 0.9469 32 1 -0.3634 0.6205 -0.8192 33 1 3.7237 -1.3270 -2.1211 34 1 3.8628 0.2324 -1.2719 35 1 3.5833 -2.5215 0.0168 36 1 5.0376 -1.4932 0.0164 37 1 -0.4464 -1.4942 1.5977 38 1 -1.8339 -2.9609 3.1607 39 1 -2.7778 -5.2184 3.4126 40 1 -1.8749 -7.0882 2.0926 41 1 -0.4011 -8.4904 1.6022 42 1 -1.5803 -8.1488 0.3132 43 1 0.0475 -8.9323 -1.3847 44 1 1.2271 -9.2743 -0.0963 45 1 1.3005 -12.3004 -2.1926 46 1 0.9185 -4.4374 0.2410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335922693.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:07 Heat of formation + Delta-G solvation = -124.320976 kcal Electronic energy + Delta-G solvation = -29036.502696 eV Core-core repulsion = 24892.365249 eV Total energy + Delta-G solvation = -4144.137447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57459 -39.94363 -38.81826 -37.21655 -36.40925 -35.02419 -33.42147 -33.22740 -30.86093 -29.70391 -29.36366 -29.04179 -27.46475 -25.05035 -23.71928 -23.53024 -22.51699 -21.81874 -20.74425 -20.24058 -18.36444 -17.72617 -17.37603 -17.03642 -16.60440 -16.25126 -15.82399 -15.79095 -15.45299 -15.38996 -15.27638 -14.99076 -14.59572 -14.26588 -13.91743 -13.48008 -13.31183 -13.03070 -12.97906 -12.73309 -12.61543 -12.45666 -12.31353 -12.03735 -11.86318 -11.66946 -11.48770 -11.27837 -10.93069 -10.92235 -10.75770 -10.54053 -10.21513 -10.05420 -9.81078 -9.62950 -9.26592 -9.15610 -8.43763 -8.27850 -7.81854 -6.08015 -4.12617 1.32339 1.63664 2.28433 2.65069 3.20875 3.25684 3.28040 3.34922 3.38594 3.81990 3.91286 3.98384 4.24149 4.35972 4.43930 4.59284 4.68637 4.73125 4.90738 4.96055 4.99620 5.06758 5.17678 5.25293 5.28354 5.36376 5.43030 5.46741 5.57204 5.68090 5.69585 5.93519 6.04794 6.06689 6.24739 6.35928 6.47874 6.53347 6.60587 6.61132 6.76301 6.97567 7.12955 7.54051 7.67564 7.83727 7.84007 8.09536 8.26407 8.93251 9.51544 11.03649 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016297 B = 0.002401 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.731450 B =11657.581633 C =12811.523319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.063 3.937 3 H 0.083 0.917 4 O -0.369 6.369 5 C 0.026 3.974 6 C -0.001 4.001 7 O -0.350 6.350 8 C 0.044 3.956 9 H 0.138 0.862 10 C 0.496 3.504 11 O -0.496 6.496 12 N -0.669 5.669 13 C 0.171 3.829 14 C -0.195 4.195 15 C -0.062 4.062 16 C -0.224 4.224 17 C 0.163 3.837 18 O -0.312 6.312 19 C 0.065 3.935 20 C 0.025 3.975 21 C -0.525 4.525 22 H 0.059 0.941 23 C 0.060 3.940 24 N -0.889 5.889 25 Si 0.899 3.101 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.282 1.282 29 C -0.160 4.160 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.410 0.590 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.263 0.737 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.629 28.726 6.651 29.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.005 3.995 3 H 0.101 0.899 4 O -0.288 6.288 5 C -0.051 4.051 6 C -0.077 4.077 7 O -0.267 6.267 8 C -0.018 4.018 9 H 0.155 0.845 10 C 0.282 3.718 11 O -0.369 6.369 12 N -0.319 5.319 13 C 0.077 3.923 14 C -0.215 4.215 15 C -0.081 4.081 16 C -0.243 4.243 17 C 0.115 3.885 18 O -0.225 6.225 19 C -0.009 4.009 20 C -0.013 4.013 21 C -0.563 4.563 22 H 0.077 0.923 23 C -0.142 4.142 24 N -0.527 5.527 25 Si 0.726 3.274 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.181 4.181 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.250 0.750 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.765 27.958 6.256 28.660 hybrid contribution -0.723 -0.668 0.301 1.029 sum -1.488 27.290 6.557 28.106 Atomic orbital electron populations 1.22157 0.92235 1.04747 1.03544 1.22646 0.96201 0.95925 0.84768 0.89869 1.88173 1.21273 1.78212 1.41190 1.23313 0.81131 1.00850 0.99774 1.23763 1.00641 0.99262 0.84082 1.88178 1.16928 1.77651 1.43945 1.22883 0.84213 0.93255 1.01479 0.84497 1.21409 0.81975 0.92142 0.76228 1.90689 1.59304 1.41011 1.45875 1.43921 1.08866 1.07547 1.71587 1.17321 0.95155 0.84261 0.95518 1.20626 1.01253 0.98022 1.01602 1.20659 0.98287 0.91596 0.97572 1.21403 1.00613 1.00841 1.01476 1.18990 0.91127 0.88501 0.89913 1.86198 1.58889 1.17330 1.60060 1.23351 0.97288 0.79196 1.01070 1.19134 0.96732 0.90656 0.94739 1.21007 1.18947 0.92401 1.23992 0.92306 1.24997 0.94984 0.99313 0.94945 1.69989 1.26490 1.30769 1.25473 0.86433 0.79209 0.83672 0.78079 1.19645 1.20849 1.20840 1.20397 1.04270 0.89880 1.03536 0.90123 0.90189 0.90168 0.87323 0.92254 0.87907 0.87507 0.75037 0.86110 0.85669 0.85028 0.93060 0.93051 0.95379 0.95358 0.92766 0.83929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 7.98 37.15 0.30 -0.60 16 2 C 0.06 0.47 3.15 -26.66 -0.08 0.39 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 4 O -0.37 -3.88 10.23 -48.80 -0.50 -4.38 16 5 C 0.03 0.23 7.05 37.23 0.26 0.49 16 6 C 0.00 -0.02 6.60 37.23 0.25 0.23 16 7 O -0.35 -3.86 10.53 -62.46 -0.66 -4.52 16 8 C 0.04 0.38 3.40 -27.81 -0.09 0.29 16 9 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 10 C 0.50 5.98 6.28 -10.98 -0.07 5.91 16 11 O -0.50 -8.17 11.21 -14.18 -0.16 -8.33 16 12 N -0.67 -6.83 4.05 -9.87 -0.04 -6.87 16 13 C 0.17 2.32 6.29 -83.72 -0.53 1.79 16 14 C -0.19 -2.28 9.96 -39.37 -0.39 -2.67 16 15 C -0.06 -0.79 10.03 -39.63 -0.40 -1.19 16 16 C -0.22 -3.57 9.04 -39.40 -0.36 -3.92 16 17 C 0.16 3.04 6.68 -39.25 -0.26 2.78 16 18 O -0.31 -6.85 10.13 -19.45 -0.20 -7.05 16 19 C 0.06 1.44 4.68 37.16 0.17 1.62 16 20 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 21 C -0.53 -14.88 9.11 -34.44 -0.31 -15.20 16 22 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 24 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 25 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 C -0.16 -2.78 8.63 -39.25 -0.34 -3.12 16 30 H 0.08 0.58 5.90 -51.93 -0.31 0.27 16 31 H 0.08 0.16 7.64 -51.93 -0.40 -0.23 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 1.39 5.34 -51.93 -0.28 1.11 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.41 2.53 6.06 -40.82 -0.25 2.29 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.13 2.04 6.29 -52.48 -0.33 1.71 16 41 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 42 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.14 2.72 6.25 -52.49 -0.33 2.39 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -35.42 370.07 -8.81 -44.24 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.45 Total: 2.05 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -2.10 Total: -11.07 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.70 Total: -33.02 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -1.51 Total: -24.27 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.42 -8.81 -44.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335922693.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.085 kcal (2) G-P(sol) polarization free energy of solvation -35.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds