Wall clock time and date at job start Tue Mar 31 2020 19:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.52738 * 2 1 4 4 O 1.43085 * 109.52309 * 239.87379 * 2 1 3 5 5 C 1.43075 * 113.58945 * 182.08064 * 4 2 1 6 6 C 1.53140 * 109.15475 * 57.95226 * 5 4 2 7 7 O 1.43077 * 109.14808 * 304.68666 * 6 5 4 8 8 C 1.43074 * 113.59488 * 57.95270 * 7 6 5 9 9 H 1.08999 * 109.52613 * 182.13996 * 8 7 6 10 10 C 1.50705 * 109.52668 * 61.94613 * 8 7 6 11 11 O 1.21291 * 119.99901 * 351.88558 * 10 8 7 12 12 N 1.34775 * 120.00193 * 171.88477 * 10 8 7 13 13 C 1.39916 * 119.99972 * 184.49560 * 12 10 8 14 14 C 1.38934 * 120.04089 * 144.36158 * 13 12 10 15 15 C 1.38122 * 120.03858 * 179.76584 * 14 13 12 16 16 C 1.38214 * 120.12412 * 0.51610 * 15 14 13 17 17 C 1.38764 * 120.08497 * 359.73765 * 16 15 14 18 18 O 1.35909 * 120.01905 * 180.02562 * 17 16 15 19 19 C 1.42895 * 116.99814 * 359.97438 * 18 17 16 20 20 C 1.53005 * 109.46816 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47099 * 179.97438 * 20 19 18 22 22 H 1.08001 * 120.00121 * 0.02562 * 21 20 19 23 23 C 1.37878 * 119.99744 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00251 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99711 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47385 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47189 * 120.00215 * 25 23 21 28 28 H 1.48501 * 109.47162 * 240.00377 * 25 23 21 29 29 C 1.38622 * 119.96122 * 0.02562 * 17 16 15 30 30 H 1.09002 * 109.47350 * 172.85315 * 1 2 3 31 31 H 1.08999 * 109.47402 * 292.85691 * 1 2 3 32 32 H 1.09003 * 109.47268 * 52.85953 * 1 2 3 33 33 H 1.08999 * 109.52273 * 177.85786 * 5 4 2 34 34 H 1.09004 * 109.52659 * 298.04673 * 5 4 2 35 35 H 1.09004 * 109.52019 * 64.58468 * 6 5 4 36 36 H 1.08995 * 109.52881 * 184.78607 * 6 5 4 37 37 H 0.96995 * 119.99885 * 4.49565 * 12 10 8 38 38 H 1.07995 * 119.98372 * 0.03088 * 14 13 12 39 39 H 1.08002 * 119.93884 * 180.25564 * 15 14 13 40 40 H 1.08005 * 119.95610 * 179.72237 * 16 15 14 41 41 H 1.08997 * 109.47507 * 299.99655 * 19 18 17 42 42 H 1.09006 * 109.47252 * 60.00490 * 19 18 17 43 43 H 1.08997 * 109.47079 * 300.00258 * 20 19 18 44 44 H 1.09002 * 109.46881 * 60.00043 * 20 19 18 45 45 H 0.96997 * 120.00052 * 179.97438 * 24 23 21 46 46 H 1.07996 * 120.06347 * 180.02562 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 8 2.0081 -0.6769 -1.1664 5 6 3.4344 -0.7691 -1.2305 6 6 3.9477 -1.4942 0.0169 7 8 3.4695 -0.8173 1.1832 8 6 2.0432 -0.7251 1.2474 9 1 1.7539 -0.1672 2.1380 10 6 1.4509 -2.1097 1.3045 11 8 2.1607 -3.0800 1.1439 12 7 0.1325 -2.2698 1.5341 13 6 -0.4010 -3.5549 1.6808 14 6 -1.4386 -3.7791 2.5771 15 6 -1.9685 -5.0468 2.7183 16 6 -1.4614 -6.0971 1.9768 17 6 -0.4217 -5.8801 1.0839 18 8 0.0756 -6.9138 0.3550 19 6 -0.5194 -8.1969 0.5592 20 6 0.1662 -9.2261 -0.3418 21 6 -0.4608 -10.5794 -0.1260 22 1 -1.2679 -10.6938 0.5825 23 6 -0.0041 -11.6714 -0.8331 24 7 0.9790 -11.5321 -1.6955 25 14 -0.7818 -13.3487 -0.5662 26 1 -1.8603 -13.2385 0.4487 27 1 -1.3550 -13.8378 -1.8458 28 1 0.2513 -14.3031 -0.0896 29 6 0.1096 -4.6083 0.9357 30 1 -0.3634 -1.0197 -0.1279 31 1 -0.3634 0.3992 0.9469 32 1 -0.3634 0.6205 -0.8192 33 1 3.7237 -1.3270 -2.1211 34 1 3.8628 0.2324 -1.2719 35 1 3.5833 -2.5215 0.0168 36 1 5.0376 -1.4932 0.0164 37 1 -0.4464 -1.4942 1.5977 38 1 -1.8339 -2.9609 3.1607 39 1 -2.7778 -5.2184 3.4126 40 1 -1.8749 -7.0882 2.0926 41 1 -0.4011 -8.4904 1.6022 42 1 -1.5803 -8.1488 0.3132 43 1 0.0475 -8.9323 -1.3847 44 1 1.2271 -9.2743 -0.0963 45 1 1.3005 -12.3004 -2.1926 46 1 0.9185 -4.4374 0.2410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335922693.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:06 Heat of formation + Delta-G solvation = -148.841451 kcal Electronic energy + Delta-G solvation = -29037.565984 eV Core-core repulsion = 24892.365249 eV Total energy + Delta-G solvation = -4145.200735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.43242 -41.10361 -39.93415 -38.41514 -37.24121 -36.03705 -35.45609 -34.03103 -32.62209 -31.05638 -30.33595 -30.01103 -28.21123 -27.02275 -24.64696 -24.37474 -23.62801 -23.30347 -22.01070 -21.34691 -19.67259 -18.53971 -18.45005 -18.10640 -17.82980 -17.43530 -16.99738 -16.88546 -16.80842 -16.57960 -16.46609 -16.32438 -15.91012 -15.39169 -14.71726 -14.51962 -14.48228 -14.36649 -14.31414 -13.94292 -13.48633 -13.39285 -13.25727 -13.22136 -13.02725 -12.80041 -12.74930 -12.65173 -12.55864 -12.28825 -12.11092 -11.73342 -11.62112 -11.54464 -11.41402 -11.14396 -10.88714 -10.65521 -10.02082 -9.46653 -9.04042 -8.28580 -6.43127 0.19044 0.46671 1.36280 1.39512 1.41311 1.54845 1.77345 2.26985 2.49556 2.51666 2.63326 2.79684 3.05681 3.31443 3.46929 3.83048 3.88118 3.89829 4.09048 4.13761 4.18435 4.20183 4.23693 4.24338 4.29408 4.35524 4.42374 4.55662 4.62439 4.66325 4.71406 4.78666 4.81916 4.93954 5.19602 5.23590 5.26134 5.30596 5.38915 5.41950 5.49679 5.66044 5.69913 5.88906 5.98777 6.04300 6.28488 6.53932 6.71991 6.99363 7.27312 8.85200 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016297 B = 0.002401 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.731450 B =11657.581633 C =12811.523319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.059 3.941 3 H 0.110 0.890 4 O -0.399 6.399 5 C 0.028 3.972 6 C -0.002 4.002 7 O -0.363 6.363 8 C 0.045 3.955 9 H 0.181 0.819 10 C 0.487 3.513 11 O -0.549 6.549 12 N -0.650 5.650 13 C 0.173 3.827 14 C -0.170 4.170 15 C -0.053 4.053 16 C -0.233 4.233 17 C 0.121 3.879 18 O -0.347 6.347 19 C 0.085 3.915 20 C 0.027 3.973 21 C -0.544 4.544 22 H 0.074 0.926 23 C -0.001 4.001 24 N -0.933 5.933 25 Si 0.980 3.020 26 H -0.255 1.255 27 H -0.276 1.276 28 H -0.277 1.277 29 C -0.185 4.185 30 H 0.057 0.943 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.122 0.878 37 H 0.433 0.567 38 H 0.173 0.827 39 H 0.168 0.832 40 H 0.133 0.867 41 H 0.061 0.939 42 H 0.065 0.935 43 H -0.004 1.004 44 H -0.007 1.007 45 H 0.267 0.733 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 31.217 9.340 32.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.001 3.999 3 H 0.128 0.872 4 O -0.319 6.319 5 C -0.048 4.048 6 C -0.078 4.078 7 O -0.280 6.280 8 C -0.017 4.017 9 H 0.198 0.802 10 C 0.276 3.724 11 O -0.426 6.426 12 N -0.302 5.302 13 C 0.078 3.922 14 C -0.190 4.190 15 C -0.071 4.071 16 C -0.252 4.252 17 C 0.075 3.925 18 O -0.262 6.262 19 C 0.011 3.989 20 C -0.010 4.010 21 C -0.582 4.582 22 H 0.092 0.908 23 C -0.200 4.200 24 N -0.573 5.573 25 Si 0.803 3.197 26 H -0.178 1.178 27 H -0.201 1.201 28 H -0.203 1.203 29 C -0.207 4.207 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.139 0.861 37 H 0.277 0.723 38 H 0.190 0.810 39 H 0.186 0.814 40 H 0.150 0.850 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.014 0.986 44 H 0.012 0.988 45 H 0.076 0.924 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.704 30.520 8.962 32.024 hybrid contribution 0.198 -1.256 -0.507 1.369 sum -3.506 29.264 8.455 30.662 Atomic orbital electron populations 1.22246 0.90519 1.03698 1.06166 1.22977 0.97593 0.96438 0.82858 0.87211 1.88142 1.21931 1.78985 1.42840 1.23344 0.80827 1.01860 0.98815 1.23698 1.01514 0.97485 0.85112 1.88136 1.18472 1.77272 1.44168 1.23286 0.82914 0.91310 1.04154 0.80193 1.22246 0.82141 0.93115 0.74891 1.90705 1.60709 1.43104 1.48069 1.43836 1.08722 1.07096 1.70561 1.17487 0.95248 0.84587 0.94876 1.21173 0.98962 0.99163 0.99744 1.21168 0.98425 0.90799 0.96729 1.21548 0.99969 1.02230 1.01475 1.19302 0.93482 0.87867 0.91892 1.86100 1.60244 1.17861 1.61987 1.22895 0.97051 0.78869 1.00089 1.18981 0.95299 0.92705 0.94010 1.21421 1.19412 0.92943 1.24420 0.90796 1.26117 0.95346 1.04206 0.94296 1.70146 1.28146 1.32388 1.26582 0.85175 0.78514 0.77463 0.78517 1.17845 1.20134 1.20251 1.20348 1.04478 0.91060 1.04765 0.92447 0.86009 0.89560 0.87339 0.89829 0.91819 0.86062 0.72335 0.80969 0.81440 0.84959 0.92067 0.91662 0.98562 0.98845 0.92425 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 7.98 71.98 0.57 -0.68 16 2 C 0.06 0.75 3.15 30.64 0.10 0.84 16 3 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 4 O -0.40 -8.31 10.23 -136.01 -1.39 -9.70 16 5 C 0.03 0.50 7.05 72.03 0.51 1.01 16 6 C 0.00 -0.04 6.60 72.03 0.48 0.43 16 7 O -0.36 -7.80 10.53 -122.94 -1.29 -9.10 16 8 C 0.04 0.70 3.40 29.90 0.10 0.80 16 9 H 0.18 1.14 8.14 -2.39 -0.02 1.12 16 10 C 0.49 11.70 6.28 87.66 0.55 12.25 16 11 O -0.55 -19.56 11.21 15.80 0.18 -19.38 16 12 N -0.65 -12.10 4.05 -303.54 -1.23 -13.33 16 13 C 0.17 4.48 6.29 38.14 0.24 4.72 16 14 C -0.17 -3.28 9.96 22.41 0.22 -3.06 16 15 C -0.05 -1.15 10.03 22.24 0.22 -0.93 16 16 C -0.23 -7.28 9.04 22.39 0.20 -7.08 16 17 C 0.12 4.77 6.68 22.49 0.15 4.92 16 18 O -0.35 -16.64 10.13 -92.52 -0.94 -17.58 16 19 C 0.09 3.99 4.68 71.98 0.34 4.33 16 20 C 0.03 1.58 5.34 29.85 0.16 1.74 16 21 C -0.54 -31.74 9.11 25.60 0.23 -31.51 16 22 H 0.07 3.99 7.74 -2.91 -0.02 3.97 16 23 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 24 N -0.93 -58.69 13.29 21.45 0.28 -58.41 16 25 Si 0.98 44.48 29.54 68.60 2.03 46.50 16 26 H -0.25 -10.78 7.11 99.48 0.71 -10.08 16 27 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 28 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 29 C -0.19 -6.85 8.63 22.49 0.19 -6.66 16 30 H 0.06 0.72 5.90 -2.39 -0.01 0.70 16 31 H 0.12 -0.16 7.64 -2.39 -0.02 -0.18 16 32 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.94 5.34 -2.38 -0.01 1.93 16 36 H 0.12 2.15 8.14 -2.39 -0.02 2.14 16 37 H 0.43 3.70 6.06 -92.71 -0.56 3.14 16 38 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 39 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 40 H 0.13 4.02 6.29 -2.91 -0.02 4.00 16 41 H 0.06 2.69 7.66 -2.39 -0.02 2.67 16 42 H 0.07 2.82 7.66 -2.38 -0.02 2.80 16 43 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 44 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 46 H 0.11 4.69 6.25 -2.91 -0.02 4.68 16 Total: -1.00 -86.17 370.07 2.81 -83.36 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.45 Total: 16.12 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 4.73 Total: -18.50 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -0.95 Total: -71.74 kcal Atomic # 8 Polarization: -52.30 SS G_CDS: -3.45 Total: -55.75 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -86.17 2.81 -83.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335922693.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.478 kcal (2) G-P(sol) polarization free energy of solvation -86.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds